Rmu_sc0040059.1_g000002

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040059.1
OG0000789
Physical Location & Seq
Forward (+)
1830 .. 3514
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040059.1_g000002.1.cds

Sequence Viewer

Length: 228 bp
atgagtagcgaaaaggttcccaatcccatttctactactgctgcgaacaccaagaccactcctcctcacggcgtcgagttcgttaagggcgtcaatggcctcgacaaggtcgtcctccgtgatccgcgcggcagtctcgccgaggtgtatttgtatgggggtcatgtaacatcatggaagaatgaccagggggaggaattgctatttgtcagcaataaggtactgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

75

Amino Acids

8.13

Weight (kDa)

6.71

Isoelectric Point (pI)

20.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccII CGCG 2 cut(s) 127, 129
AciI CCGC 2 cut(s) 125, 129
AclWI GGATC 1 cut(s) 116
AcyI GRCGYC 2 cut(s) 72, 90
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 3 cut(s) 68, 106, 193
AjnI CCWGG 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 1 cut(s) 116
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 41
Asp700I GAANNNNTTC 1 cut(s) 15
AspLEI GCGC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 140
BisI GCNGC 2 cut(s) 42, 130
BlsI GCNGC 2 cut(s) 43, 131
Bme1390I CCNGG 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 188
BsaHI GRCGYC 2 cut(s) 72, 90
BsaJI CCNNGG 2 cut(s) 141, 187
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 106, 193
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 2 cut(s) 141, 187
BseLI CCNNNNNNNGG 3 cut(s) 68, 106, 193
BseRI GAGGAG 2 cut(s) 51, 54
BseXI GCAGC 1 cut(s) 28
Bsh1236I CGCG 2 cut(s) 127, 129
BshFI GGCC 1 cut(s) 99
BslI CCNNNNNNNGG 3 cut(s) 68, 106, 193
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 2 cut(s) 125, 129
BspANI GGCC 1 cut(s) 99
BspFNI CGCG 2 cut(s) 127, 129
BspLI GGNNCC 1 cut(s) 18
BspPI GGATC 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 141, 187
BssMI GATC 1 cut(s) 121
BssNI GRCGYC 2 cut(s) 72, 90
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 225
BstACI GRCGYC 2 cut(s) 72, 90
BstENI CCTNNNNNAGG 1 cut(s) 104
BstFNI CGCG 2 cut(s) 127, 129
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 186
BstUI CGCG 2 cut(s) 127, 129
BstV1I GCAGC 1 cut(s) 28
BsuRI GGCC 1 cut(s) 99
CfoI GCGC 1 cut(s) 129
CseI GACGC 2 cut(s) 61, 79
Csp6I GTAC 1 cut(s) 221
CviAII CATG 2 cut(s) 164, 174
CviJI RGCY 1 cut(s) 99
CviKI_1 RGCY 1 cut(s) 99
CviQI GTAC 1 cut(s) 221
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 167, 177
FaiI YATR 3 cut(s) 156, 165, 175
FatI CATG 2 cut(s) 163, 173
Fnu4HI GCNGC 2 cut(s) 42, 130
Fsp4HI GCNGC 2 cut(s) 42, 130
GlaI GCGC 1 cut(s) 128
GluI GCNGC 2 cut(s) 42, 130
HaeIII GGCC 1 cut(s) 99
HgaI GACGC 2 cut(s) 61, 79
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 2 cut(s) 72, 90
Hin1II CATG 2 cut(s) 167, 177
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
Hsp92I GRCGYC 2 cut(s) 72, 90
Hsp92II CATG 2 cut(s) 167, 177
HspAI GCGC 1 cut(s) 127
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 2 cut(s) 173, 200
Lsp1109I GCAGC 1 cut(s) 28
MaeIII GTNAC 1 cut(s) 166
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 1 cut(s) 190
MluCI AATT 1 cut(s) 197
MnlI CCTC 6 cut(s) 72, 75, 110, 125, 136, 187
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 2 cut(s) 127, 129
MwoI GCNNNNNNNGC 1 cut(s) 96
NdeII GATC 1 cut(s) 121
NlaIII CATG 2 cut(s) 167, 177
NlaIV GGNNCC 1 cut(s) 18
NmeAIII GCCGAG 1 cut(s) 166
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 108
PdmI GAANNNNTTC 1 cut(s) 15
PflFI GACNNNGTC 1 cut(s) 107
PkrI GCNGC 2 cut(s) 43, 131
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 18
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 2 cut(s) 42, 130
Sau3AI GATC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 188
SetI ASST 4 cut(s) 18, 111, 147, 222
Sse9I AATT 1 cut(s) 197
SsiI CCGC 2 cut(s) 125, 129
StyD4I CCNGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 225
TaqI TCGA 2 cut(s) 75, 102
TasI AATT 1 cut(s) 197
TauI GCSGC 1 cut(s) 132
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseI GCWGC 1 cut(s) 41
TspGWI ACGGA 1 cut(s) 107
Tth111I GACNNNGTC 1 cut(s) 107
XagI CCTNNNNNAGG 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.