pycom09g14950

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000789
Physical Location & Seq
Forward (+)
14786532 .. 14793746
7215 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g14950.1

Sequence Viewer

Length: 882 bp
ATGGAGAGAGCGAGTAATGTCTTCCGGCGTCCAGGAAAGAGAGAGGGCGCTTTGGAGCACTTTAAGGGCCCGAATGGCCTTGACAAGGTCGTTCTCAGAGAGGTTCGAGGCTCTTCCGCGGAGGTATATTTGTATGGGGGTCAAGTTACATCATGGAAAAATGAATATGGGGAGGATTTGCTTTTCGTTAGTAGCAAGGCTACTTATAAGTCTCCTAAGGCTATCCGTGGTGGAATCCCAATATGTTTTCCTCAATTTGGAAGTTATGGTTCCCTTGAACAACATGGATTTGCAAGGAATAGGCTTTGGAGTATTGATCATGATCCCCCGCCTTTCCCAACAAACAGCGGTAACAAGGCTTTCATTGATTTAATCCTCAAACCCTCTGACGAGAATGCAAAGATCTGGCCTCACAGATATGAATTTTGCCTTAGGGTAACTTTGGGACCTGGAGGGGATTTGATGTTGACATCTCGCATCCGAAATACAAACACTGATGGAAAGTCATTTACATTCACATTTGCCTATCACACCTATCTGGCTGTAACTGATATCAGTGAAGTGCGGGTAGAAGGACTGGAGACACTGGATTATCTGGATAACCTGAAGAGTAAAGAGCTATTTACTGAGCAAGGGGATGCAATAACATTTGAGTCTGAGGTGGACAAAGTTTATCTCAGCACACCTACAAAAATTGCTATTCTGGACCATGAAAGGAAGAGAACATTTGTGTTAAGGAAGGACGGGCTTCCATATGCTGTTGTCTGGAATCTGTGGGATAAGAAGGCAAAGGCAATAACTGAATTTGGGGATGATGAGTACAAGAATATGCTGTGTGTCCAGGCTGCTTGTGGAAAAGCCTGTTACTTTGAAACCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

294

Amino Acids

33.3

Weight (kDa)

7.01

Isoelectric Point (pI)

29.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 29 - 283 2.2e-57 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 207
AccII CGCG 1 cut(s) 119
AciI CCGC 5 cut(s) 117, 119, 329, 348, 565
AclWI GGATC 1 cut(s) 317
AcsI RAATTY 2 cut(s) 422, 803
AcuI CTGAAG 1 cut(s) 626
AcyI GRCGYC 1 cut(s) 28
AfaI GTAC 1 cut(s) 821
AfiI CCNNNNNNNGG 2 cut(s) 85, 257
AgsI TTSAA 2 cut(s) 278, 872
AjnI CCWGG 4 cut(s) 31, 448, 840, 875
AluBI AGCT 1 cut(s) 619
AluI AGCT 1 cut(s) 619
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 2 cut(s) 216, 575
AlwI GGATC 1 cut(s) 317
AoxI GGCC 3 cut(s) 67, 76, 407
ApaI GGGCCC 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 845
ApoI RAATTY 2 cut(s) 422, 803
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 4 cut(s) 67, 68, 446, 706
AvaII GGWCC 2 cut(s) 446, 706
AxyI CCTNAGG 2 cut(s) 216, 431
BaeGI GKGCMC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 832
BccI CCATC 1 cut(s) 491
BciT130I CCWGG 4 cut(s) 33, 450, 842, 877
BclI TGATCA 1 cut(s) 316
BcoDI GTCTC 2 cut(s) 216, 575
BfoI RGCGCY 1 cut(s) 51
BglI GCCNNNNNGGC 1 cut(s) 75
BglII AGATCT 1 cut(s) 402
BisI GCNGC 1 cut(s) 846
BlsI GCNGC 1 cut(s) 847
Bme1390I CCNGG 4 cut(s) 33, 450, 842, 877
Bme18I GGWCC 2 cut(s) 446, 706
BmgT120I GGNCC 4 cut(s) 67, 68, 446, 706
BmiI GGNNCC 3 cut(s) 69, 271, 447
BmrFI CCNGG 4 cut(s) 33, 450, 842, 877
BmsI GCATC 2 cut(s) 486, 628
BpiI GAAGAC 1 cut(s) 13
BpmI CTGGAG 2 cut(s) 471, 599
BsaBI GATNNNNATC 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 117, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 257
Bse1I ACTGG 2 cut(s) 582, 591
Bse21I CCTNAGG 2 cut(s) 216, 431
Bse8I GATNNNNATC 1 cut(s) 321
BseBI CCWGG 4 cut(s) 33, 450, 842, 877
BseDI CCNNGG 2 cut(s) 117, 226
BseGI GGATG 3 cut(s) 477, 643, 817
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 2 cut(s) 85, 257
BseMII CTCAG 4 cut(s) 109, 618, 648, 691
BseNI ACTGG 2 cut(s) 582, 591
BseSI GKGCMC 1 cut(s) 71
BseXI GCAGC 1 cut(s) 832
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 3 cut(s) 69, 78, 409
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 1 cut(s) 25
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 2 cut(s) 85, 257
BsmAI GTCTC 2 cut(s) 216, 575
BsmFI GGGAC 1 cut(s) 459
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 3 cut(s) 69, 78, 409
Bsp120I GGGCCC 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 60, 71
Bsp143I GATC 3 cut(s) 316, 322, 402
BspACI CCGC 5 cut(s) 117, 119, 329, 348, 565
BspANI GGCC 3 cut(s) 69, 78, 409
BspCNI CTCAG 4 cut(s) 108, 619, 649, 690
BspFNI CGCG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 3 cut(s) 69, 271, 447
BspPI GGATC 1 cut(s) 317
BspQI GCTCTTC 1 cut(s) 118
BsrI ACTGG 2 cut(s) 582, 591
BssECI CCNNGG 2 cut(s) 117, 226
BssMI GATC 3 cut(s) 316, 322, 402
BssNI GRCGYC 1 cut(s) 28
Bst2UI CCWGG 4 cut(s) 33, 450, 842, 877
Bst6I CTCTTC 3 cut(s) 118, 602, 713
BstACI GRCGYC 1 cut(s) 28
BstDEI CTNAG 6 cut(s) 95, 216, 431, 627, 657, 677
BstDSI CCRYGG 2 cut(s) 117, 226
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 3 cut(s) 477, 643, 817
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 3 cut(s) 319, 325, 405
BstMAI GTCTC 2 cut(s) 216, 575
BstMBI GATC 3 cut(s) 316, 322, 402
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstNI CCWGG 4 cut(s) 33, 450, 842, 877
BstSCI CCNGG 4 cut(s) 31, 448, 840, 875
BstSLI GKGCMC 1 cut(s) 71
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 832
BstV2I GAAGAC 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
Bsu36I CCTNAGG 2 cut(s) 216, 431
BsuRI GGCC 3 cut(s) 69, 78, 409
BtgI CCRYGG 2 cut(s) 117, 226
BtsCI GGATG 3 cut(s) 477, 643, 817
BtsIMutI CAGTG 3 cut(s) 492, 562, 584
CciI TCATGA 1 cut(s) 319
CfoI GCGC 1 cut(s) 50
Cfr13I GGNCC 4 cut(s) 67, 68, 446, 706
Cfr42I CCGCGG 1 cut(s) 120
CseI GACGC 1 cut(s) 17
CsiI ACCWGGT 1 cut(s) 875
Csp6I GTAC 1 cut(s) 820
CviAII CATG 4 cut(s) 153, 284, 320, 710
CviQI GTAC 1 cut(s) 820
DdeI CTNAG 6 cut(s) 95, 216, 431, 627, 657, 677
DpnI GATC 3 cut(s) 318, 324, 404
DpnII GATC 3 cut(s) 316, 322, 402
Eam1104I CTCTTC 3 cut(s) 118, 602, 713
EarI CTCTTC 3 cut(s) 118, 602, 713
Eco24I GRGCYC 1 cut(s) 71
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 2 cut(s) 446, 706
Eco57I CTGAAG 1 cut(s) 626
Eco81I CCTNAGG 2 cut(s) 216, 431
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoO109I RGGNCCY 2 cut(s) 67, 446
EcoRII CCWGG 4 cut(s) 31, 448, 840, 875
EcoRV GATATC 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 71
FaeI CATG 4 cut(s) 156, 287, 323, 713
FaqI GGGAC 1 cut(s) 459
FatI CATG 4 cut(s) 152, 283, 319, 709
FauI CCCGC 2 cut(s) 336, 558
FauNDI CATATG 1 cut(s) 754
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 1 cut(s) 846
FokI GGATG 3 cut(s) 464, 650, 824
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 846
GlaI GCGC 1 cut(s) 49
GluI GCNGC 1 cut(s) 846
GsuI CTGGAG 2 cut(s) 471, 599
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 3 cut(s) 69, 78, 409
HapII CCGG 1 cut(s) 25
HgaI GACGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 28
Hin1II CATG 4 cut(s) 156, 287, 323, 713
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HincII GTYRAC 1 cut(s) 468
HindII GTYRAC 1 cut(s) 468
HinfI GANTC 3 cut(s) 234, 653, 769
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 2 cut(s) 468, 664
Hpy188I TCNGA 4 cut(s) 98, 388, 482, 658
Hpy188III TCNNGA 4 cut(s) 320, 596, 704, 766
Hpy8I GTNNAC 2 cut(s) 468, 664
HpyAV CCTTC 3 cut(s) 566, 733, 778
HpyCH4V TGCA 3 cut(s) 293, 398, 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 6 cut(s) 95, 216, 431, 627, 657, 677
Hsp92I GRCGYC 1 cut(s) 28
Hsp92II CATG 4 cut(s) 156, 287, 323, 713
HspAI GCGC 1 cut(s) 48
Ksp22I TGATCA 1 cut(s) 316
KspI CCGCGG 1 cut(s) 120
Kzo9I GATC 3 cut(s) 316, 322, 402
LguI GCTCTTC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 55
Lsp1109I GCAGC 1 cut(s) 832
LweI GCATC 2 cut(s) 486, 628
MabI ACCWGGT 1 cut(s) 875
MaeIII GTNAC 5 cut(s) 145, 350, 436, 544, 863
MalI GATC 3 cut(s) 318, 324, 404
MboI GATC 3 cut(s) 316, 322, 402
MboII GAAGA 4 cut(s) 13, 105, 619, 730
MflI RGATCY 1 cut(s) 402
MhlI GDGCHC 2 cut(s) 60, 71
MluCI AATT 4 cut(s) 254, 422, 693, 803
MlyI GAGTC 1 cut(s) 662
MseI TTAA 3 cut(s) 63, 371, 734
MslI CAYNNNNRTG 1 cut(s) 417
MspA1I CMGCKG 2 cut(s) 119, 348
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 4 cut(s) 33, 450, 842, 877
Mva1269I GAATGC 1 cut(s) 400
MvaI CCWGG 4 cut(s) 33, 450, 842, 877
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeI CATATG 1 cut(s) 754
NdeII GATC 3 cut(s) 316, 322, 402
NlaIII CATG 4 cut(s) 156, 287, 323, 713
NlaIV GGNNCC 3 cut(s) 69, 271, 447
PagI TCATGA 1 cut(s) 319
PciSI GCTCTTC 1 cut(s) 118
PctI GAATGC 1 cut(s) 400
PfeI GAWTC 2 cut(s) 234, 769
PflFI GACNNNGTC 1 cut(s) 86
PfoI TCCNGGA 1 cut(s) 31
PkrI GCNGC 1 cut(s) 847
PleI GAGTC 1 cut(s) 661
PpsI GAGTC 1 cut(s) 661
PpuMI RGGWCCY 1 cut(s) 446
PsiI TTATAA 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 446
Psp6I CCWGG 4 cut(s) 31, 448, 840, 875
PspGI CCWGG 4 cut(s) 31, 448, 840, 875
PspN4I GGNNCC 3 cut(s) 69, 271, 447
PspOMI GGGCCC 1 cut(s) 67
PspPI GGNCC 4 cut(s) 67, 68, 446, 706
PspPPI RGGWCCY 1 cut(s) 446
PsuI RGATCY 1 cut(s) 402
PsyI GACNNNGTC 1 cut(s) 86
RsaI GTAC 1 cut(s) 821
RsaNI GTAC 1 cut(s) 820
RseI CAYNNNNRTG 1 cut(s) 417
SacII CCGCGG 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 118
SaqAI TTAA 3 cut(s) 63, 371, 734
SatI GCNGC 1 cut(s) 846
Sau3AI GATC 3 cut(s) 316, 322, 402
Sau96I GGNCC 4 cut(s) 67, 68, 446, 706
SchI GAGTC 1 cut(s) 662
ScrFI CCNGG 4 cut(s) 33, 450, 842, 877
SduI GDGCHC 2 cut(s) 60, 71
SexAI ACCWGGT 1 cut(s) 875
SfaNI GCATC 2 cut(s) 486, 628
SfiI GGCCNNNNNGGCC 1 cut(s) 75
Sfr303I CCGCGG 1 cut(s) 120
SgrBI CCGCGG 1 cut(s) 120
SinI GGWCC 2 cut(s) 446, 706
SmiMI CAYNNNNRTG 1 cut(s) 417
Sse9I AATT 4 cut(s) 254, 422, 693, 803
SsiI CCGC 5 cut(s) 117, 119, 329, 348, 565
StyD4I CCNGG 4 cut(s) 31, 448, 840, 875
TaqI TCGA 1 cut(s) 106
TasI AATT 4 cut(s) 254, 422, 693, 803
TatI WGTACW 1 cut(s) 819
TfiI GAWTC 2 cut(s) 234, 769
Tru1I TTAA 3 cut(s) 63, 371, 734
Tru9I TTAA 3 cut(s) 63, 371, 734
TscAI CASTG 3 cut(s) 499, 562, 591
TseI GCWGC 1 cut(s) 845
TspDTI ATGAA 4 cut(s) 177, 352, 435, 726
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 3 cut(s) 499, 562, 591
Tth111I GACNNNGTC 1 cut(s) 86
VpaK11BI GGWCC 2 cut(s) 446, 706
XagI CCTNNNNNAGG 1 cut(s) 83
XapI RAATTY 2 cut(s) 422, 803
XcmI CCANNNNNNNNNTGG 1 cut(s) 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.