Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000789

Physical Location & Seq

Genomic Coordinates Forward (+)

18679648 .. 18682472

Gene Structure 2825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g21740.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAGCAGCGACAAGGCTCCGAATCCAATCGCTGCTTCTGCTGCAGCATCTCCCACAAATGCATCCAGTAATACTACCACTGGCGGTGGTGGCTCTGCTGCCGTTGCTAATGCTAACGTAAGCCTTCATCCCGGCGTTGAATCCTGTAAGGGCATCAATGGCCTTGACAAGCTCGTCCTCCATGATCCACGAGGCAGTTCTGCTGAGGTGTATTTGTATGGGGCTCATGTAACTTCATGGAAGAATGATCATGGAGAGGAATTGCTGTTTGTTAGCAGTAAGGCTATCTTTAAGCCTCCAAAAGCAATTCGTGGGGGAATCCCGTTATGCTTTCCGCAAGTATTTTTCAAATCTTGGTCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

122

Amino Acids

12.45

Weight (kDa)

8.64

Isoelectric Point (pI)

23.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57330
fragaria_vesca	FvH4_4g07740 FvH4_4g07740 FvH4_4g07740 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010
malus_domestica	MD05G1327600.v1.1 MD09G1230300.v1.1 MD13G1246400.v1.1 MD16G1253800.v1.1 MD17G1229200.v1.1
prunus_persica	Prupe.1G081500_v2.0.a1 Prupe.1G081500_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G292800_v2.0.a1
pyrus_communis	pycom09g14950 pycom13g21740 pycom13g21750 pycom14g13110 pycom16g21500 pycom17g23160
rosa_chinensis	RchiOBHm_Chr3g0475991 RchiOBHm_Chr4g0400811 RchiOBHm_Chr5g0018411
rosa_laevigata	RLG00000009179 RLG00000021107 RLG00000032141 RLG00000032366 RLG00000034317
rosa_multiflora	Rmu_sc0002141.1_g000020 Rmu_sc0004591.1_g000012 Rmu_sc0040059.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033540 Rroxscaffold_1G00059320 Rroxscaffold_2G00112700 Rroxscaffold_4G00322360 Rroxscaffold_5G00345630 Rroxscaffold_5G00348000
rosa_rugosa	Rorug01G0058800 Rorug02G0299000 Rorug02G0299100 Rorug04G0026000 Rorug05G0043600 Rorug06G0305200
rosa_samantha	Rh1AG113800 Rh1AG183300 Rh3BG233300 Rh4AG103900 Rh4BG098800 Rh4CG112100 Rh4DG095700 Rh6AG047200 Rh6AG174700 Rh6BG293500 Rh6BG425100
rosa_wichuraiana	Rw4G008400 Rw4G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
AciI	CCGC	2 cut(s)	84, 335
AclWI	GGATC	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	140, 349
AjuI	GAANNNNNNNTTGG	2 cut(s)	19, 51
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	5 cut(s)	6, 32, 41, 44, 98
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	226
BauI	CACGAG	1 cut(s)	189
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	5 cut(s)	18, 19, 28, 56, 85
BceAI	ACGGC	1 cut(s)	86
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	5 cut(s)	7, 33, 42, 45, 99
BlsI	GCNGC	5 cut(s)	8, 34, 43, 46, 100
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	3 cut(s)	56, 71, 162
Bpu10I	CCTNAGC	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	132
Bse1I	ACTGG	2 cut(s)	66, 85
BseGI	GGATG	2 cut(s)	62, 127
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	66, 85
BseXI	GCAGC	5 cut(s)	18, 19, 28, 56, 85
BshFI	GGCC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	132
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	2 cut(s)	184, 247
BspACI	CCGC	2 cut(s)	84, 335
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	18
BspMAI	CTGCAG	1 cut(s)	46
BspPI	GGATC	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	66, 85
BssMI	GATC	2 cut(s)	184, 247
BssSI	CACGAG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	62, 127
BstKTI	GATC	2 cut(s)	187, 250
BstMBI	GATC	2 cut(s)	184, 247
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 41, 90, 104, 159
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	5 cut(s)	18, 19, 28, 56, 85
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	62, 127
BtsIMutI	CAGTG	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	357
CviAII	CATG	4 cut(s)	182, 227, 237, 251
CviJI	RGCY	8 cut(s)	17, 93, 123, 162, 172, 224, 284, 295
CviKI_1	RGCY	8 cut(s)	17, 93, 123, 162, 172, 224, 284, 295
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	2 cut(s)	186, 249
DpnII	GATC	2 cut(s)	184, 247
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	357
EcoT22I	ATGCAT	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	226
FaeI	CATG	4 cut(s)	185, 230, 240, 254
FaiI	YATR	6 cut(s)	183, 219, 228, 238, 252, 328
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	4 cut(s)	181, 226, 236, 250
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	5 cut(s)	7, 33, 42, 45, 99
FokI	GGATG	2 cut(s)	49, 114
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	5 cut(s)	7, 33, 42, 45, 99
GluI	GCNGC	5 cut(s)	7, 33, 42, 45, 99
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	1 cut(s)	132
Hin1II	CATG	4 cut(s)	185, 230, 240, 254
HinfI	GANTC	3 cut(s)	22, 140, 318
HpaII	CCGG	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	1 cut(s)	363
HpyAV	CCTTC	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	44, 62
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 41, 90, 104, 159
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	4 cut(s)	185, 230, 240, 254
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	184, 247
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	4 cut(s)	66, 79, 145, 157
Lsp1109I	GCAGC	5 cut(s)	18, 19, 28, 56, 85
LweI	GCATC	3 cut(s)	56, 71, 162
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	2 cut(s)	186, 249
MboI	GATC	2 cut(s)	184, 247
MboII	GAAGA	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	2 cut(s)	260, 306
MnlI	CCTC	5 cut(s)	185, 188, 199, 250, 306
Mph1103I	ATGCAT	1 cut(s)	64
MseI	TTAA	1 cut(s)	291
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	5 cut(s)	38, 41, 90, 104, 159
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	184, 247
NlaIII	CATG	4 cut(s)	185, 230, 240, 254
NlaIV	GGNNCC	1 cut(s)	18
NsiI	ATGCAT	1 cut(s)	64
PfeI	GAWTC	3 cut(s)	22, 140, 318
PkrI	GCNGC	5 cut(s)	8, 34, 43, 46, 100
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	5 cut(s)	7, 33, 42, 45, 99
Sau3AI	GATC	2 cut(s)	184, 247
Sau96I	GGNCC	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	3 cut(s)	120, 174, 210
SfaNI	GCATC	3 cut(s)	56, 71, 162
SfcI	CTRYAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	357
Sse9I	AATT	2 cut(s)	260, 306
SsiI	CCGC	2 cut(s)	84, 335
StyD4I	CCNGG	1 cut(s)	130
TaiI	ACGT	1 cut(s)	120
TasI	AATT	2 cut(s)	260, 306
TfiI	GAWTC	3 cut(s)	22, 140, 318
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	85
TseI	GCWGC	5 cut(s)	6, 32, 41, 44, 98
TspDTI	ATGAA	2 cut(s)	116, 225
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	357
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.