Rh4CG112100

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000789
Physical Location & Seq
Forward (+)
21094114 .. 21102364
8251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG112100.1

Sequence Viewer

Length: 726 bp
ATGCAGTTTTCAAATCTTGGTTCTCTTGATGCACATGGATTTGCTAGAAACAGATTTTGGAGCATTGACCCTGATCCATCTCCTTTTCCAACAAATACTTCCAATAAGGTTTTTGTTGATTTGATTCTTAAGCCTACTGAAGAAGATATTAAGACTTGGCCTTATAGTTATGAGTTCCGGCTGCGAGTAGCTTTGGGACCTGGAGGAGATCTGATGTTGACATCTCGCATCCGGAATACTAACTCTGATGGGAAGCCATTCACATTCACGTTTGCTTATCATACTTATTTCTCTGTTTCAGATATAAGTGAAGTTCGTGTAGAAGGCTTGGAGACCCTCGATTATCTGGACAACATGCAGAACAGGAAACGTTGTACTGAGCAAGGGGATGCTATAACATTTGAATCGGAGGTCGACAAGATATATCTTAGCACTCCTACAAAGATTGCAATTCTGGATCATGAGAAGAAGAGAACATTTGTAATACGTAAAGATGGGCTTCCAGATGCTGTGGTGTGGAATCCCTGGGATAAGAAGGCAAAGGCTATGGCTGATTTTGGAGATGATGAGTACAAACATATGCTCTGTGTGGAGGCTGCTGCTATTGAGAGACCTATCACATTGAAACCCGGAGAGGAGTGGAGAGGAAGGCAGGAGCTTTCAGCTGTTCCTTCCAGTTACTGTAGTGGGCAACTTGATCCTCGAAAGGTTCTCCAGGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

241

Amino Acids

27.47

Weight (kDa)

5.5

Isoelectric Point (pI)

31.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 5 - 220 2.8e-53 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 414
AccIII TCCGGA 1 cut(s) 231
AclI AACGTT 1 cut(s) 370
AclWI GGATC 3 cut(s) 68, 465, 692
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 2 cut(s) 376, 572
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 3 cut(s) 12, 404, 625
AjnI CCWGG 3 cut(s) 199, 524, 714
AjuI GAANNNNNNNTTGG 4 cut(s) 40, 72, 82, 114
AluBI AGCT 3 cut(s) 191, 658, 665
AluI AGCT 3 cut(s) 191, 658, 665
Alw26I GTCTC 2 cut(s) 326, 604
AlwI GGATC 3 cut(s) 68, 465, 692
AlwNI CAGNNNCTG 2 cut(s) 509, 681
Aor13HI TCCGGA 1 cut(s) 231
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 3 cut(s) 181, 596, 599
Asp700I GAANNNNTTC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 630
AvaII GGWCC 1 cut(s) 197
BbvI GCAGC 3 cut(s) 168, 583, 586
BccI CCATC 3 cut(s) 85, 242, 488
BciT130I CCWGG 3 cut(s) 201, 526, 716
BcnI CCSGG 1 cut(s) 630
BcoDI GTCTC 2 cut(s) 326, 604
BfaI CTAG 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 682
BfrI CTTAAG 1 cut(s) 128
BglII AGATCT 1 cut(s) 208
BisI GCNGC 3 cut(s) 182, 597, 600
BlsI GCNGC 3 cut(s) 183, 598, 601
Bme1390I CCNGG 4 cut(s) 201, 526, 630, 716
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 4 cut(s) 201, 526, 630, 716
BmsI GCATC 4 cut(s) 19, 237, 379, 496
BpmI CTGGAG 2 cut(s) 222, 698
BpuMI CCSGG 1 cut(s) 630
BsaAI YACGTR 1 cut(s) 488
BsaI GGTCTC 2 cut(s) 326, 604
BsaJI CCNNGG 3 cut(s) 524, 525, 715
BsaWI WCCGGW 1 cut(s) 231
Bse1I ACTGG 1 cut(s) 675
BseAI TCCGGA 1 cut(s) 231
BseBI CCWGG 3 cut(s) 201, 526, 716
BseDI CCNNGG 3 cut(s) 524, 525, 715
BseGI GGATG 2 cut(s) 228, 394
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 675
BseRI GAGGAG 2 cut(s) 219, 650
BseXI GCAGC 3 cut(s) 168, 583, 586
BshFI GGCC 1 cut(s) 160
BsiSI CCGG 3 cut(s) 178, 232, 630
BslFI GGGAC 1 cut(s) 210
BsmAI GTCTC 2 cut(s) 326, 604
BsmFI GGGAC 1 cut(s) 210
BsnI GGCC 1 cut(s) 160
Bso31I GGTCTC 2 cut(s) 326, 604
Bsp13I TCCGGA 1 cut(s) 231
Bsp143I GATC 4 cut(s) 73, 208, 457, 697
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 370
BspEI TCCGGA 1 cut(s) 231
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 3 cut(s) 68, 465, 692
BspTI CTTAAG 1 cut(s) 128
BspTNI GGTCTC 2 cut(s) 326, 604
BsrI ACTGG 1 cut(s) 675
BssECI CCNNGG 3 cut(s) 524, 525, 715
BssMI GATC 4 cut(s) 73, 208, 457, 697
Bst2UI CCWGG 3 cut(s) 201, 526, 716
Bst4CI ACNGT 1 cut(s) 683
Bst6I CTCTTC 1 cut(s) 464
BstAFI CTTAAG 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 488
BstDEI CTNAG 2 cut(s) 378, 428
BstF5I GGATG 2 cut(s) 228, 394
BstKTI GATC 4 cut(s) 76, 211, 460, 700
BstMAI GTCTC 2 cut(s) 326, 604
BstMBI GATC 4 cut(s) 73, 208, 457, 697
BstNI CCWGG 3 cut(s) 201, 526, 716
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 4 cut(s) 199, 524, 628, 714
BstSFI CTRYAG 1 cut(s) 682
BstSNI TACGTA 1 cut(s) 488
BstV1I GCAGC 3 cut(s) 168, 583, 586
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BsuRI GGCC 1 cut(s) 160
BtsCI GGATG 2 cut(s) 228, 394
CaiI CAGNNNCTG 2 cut(s) 509, 681
CciI TCATGA 1 cut(s) 460
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 375, 571
CviAII CATG 3 cut(s) 35, 355, 461
CviQI GTAC 2 cut(s) 375, 571
DdeI CTNAG 2 cut(s) 378, 428
DpnI GATC 4 cut(s) 75, 210, 459, 699
DpnII GATC 4 cut(s) 73, 208, 457, 697
Eam1104I CTCTTC 1 cut(s) 464
EarI CTCTTC 1 cut(s) 464
Eco105I TACGTA 1 cut(s) 488
Eco31I GGTCTC 2 cut(s) 326, 604
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 159
EcoO109I RGGNCCY 1 cut(s) 197
EcoRII CCWGG 3 cut(s) 199, 524, 714
FaeI CATG 3 cut(s) 38, 358, 464
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FaqI GGGAC 1 cut(s) 210
FatI CATG 3 cut(s) 34, 354, 460
FauNDI CATATG 1 cut(s) 579
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 3 cut(s) 182, 597, 600
FokI GGATG 2 cut(s) 215, 401
Fsp4HI GCNGC 3 cut(s) 182, 597, 600
FspBI CTAG 1 cut(s) 45
GluI GCNGC 3 cut(s) 182, 597, 600
GsuI CTGGAG 2 cut(s) 222, 698
HaeIII GGCC 1 cut(s) 160
HapII CCGG 3 cut(s) 178, 232, 630
Hin1II CATG 3 cut(s) 38, 358, 464
HincII GTYRAC 2 cut(s) 219, 415
HindII GTYRAC 2 cut(s) 219, 415
HinfI GANTC 3 cut(s) 124, 404, 520
HpaII CCGG 3 cut(s) 178, 232, 630
Hpy166II GTNNAC 2 cut(s) 219, 415
Hpy188I TCNGA 4 cut(s) 213, 247, 301, 409
Hpy188III TCNNGA 6 cut(s) 26, 232, 347, 455, 461, 503
Hpy8I GTNNAC 2 cut(s) 219, 415
HpyAV CCTTC 4 cut(s) 317, 529, 642, 681
HpyCH4III ACNGT 1 cut(s) 683
HpyCH4IV ACGT 3 cut(s) 269, 370, 487
HpyCH4V TGCA 4 cut(s) 4, 32, 358, 449
HpyF3I CTNAG 2 cut(s) 378, 428
HpySE526I ACGT 3 cut(s) 269, 370, 487
Hsp92II CATG 3 cut(s) 38, 358, 464
Kpn2I TCCGGA 1 cut(s) 231
Kzo9I GATC 4 cut(s) 73, 208, 457, 697
LmnI GCTCC 2 cut(s) 60, 655
Lsp1109I GCAGC 3 cut(s) 168, 583, 586
LweI GCATC 4 cut(s) 19, 237, 379, 496
MaeI CTAG 1 cut(s) 45
MaeII ACGT 3 cut(s) 269, 370, 487
MaeIII GTNAC 1 cut(s) 677
MalI GATC 4 cut(s) 75, 210, 459, 699
MboI GATC 4 cut(s) 73, 208, 457, 697
MboII GAAGA 4 cut(s) 152, 155, 478, 481
MflI RGATCY 1 cut(s) 208
MluCI AATT 1 cut(s) 450
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 7 cut(s) 197, 347, 403, 586, 628, 638, 711
MroI TCCGGA 1 cut(s) 231
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 2 cut(s) 129, 150
MspA1I CMGCKG 1 cut(s) 665
MspCI CTTAAG 1 cut(s) 128
MspI CCGG 3 cut(s) 178, 232, 630
MspR9I CCNGG 4 cut(s) 201, 526, 630, 716
MvaI CCWGG 3 cut(s) 201, 526, 716
NciI CCSGG 1 cut(s) 630
NdeI CATATG 1 cut(s) 579
NdeII GATC 4 cut(s) 73, 208, 457, 697
NlaIII CATG 3 cut(s) 38, 358, 464
NlaIV GGNNCC 1 cut(s) 198
NspI RCATGY 1 cut(s) 358
PagI TCATGA 1 cut(s) 460
PasI CCCWGGG 1 cut(s) 525
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 3 cut(s) 124, 404, 520
PkrI GCNGC 3 cut(s) 183, 598, 601
Ppu21I YACGTR 1 cut(s) 488
PpuMI RGGWCCY 1 cut(s) 197
Psp1406I AACGTT 1 cut(s) 370
Psp5II RGGWCCY 1 cut(s) 197
Psp6I CCWGG 3 cut(s) 199, 524, 714
PspGI CCWGG 3 cut(s) 199, 524, 714
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 197
PspPPI RGGWCCY 1 cut(s) 197
PstNI CAGNNNCTG 2 cut(s) 509, 681
PsuI RGATCY 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 665
RsaI GTAC 2 cut(s) 376, 572
RsaNI GTAC 2 cut(s) 375, 571
SalI GTCGAC 1 cut(s) 413
SaqAI TTAA 2 cut(s) 129, 150
SatI GCNGC 3 cut(s) 182, 597, 600
Sau3AI GATC 4 cut(s) 73, 208, 457, 697
Sau96I GGNCC 1 cut(s) 197
ScrFI CCNGG 4 cut(s) 201, 526, 630, 716
SfaNI GCATC 4 cut(s) 19, 237, 379, 496
SfcI CTRYAG 1 cut(s) 682
SinI GGWCC 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SnaBI TACGTA 1 cut(s) 488
Sse9I AATT 1 cut(s) 450
SspMI CTAG 1 cut(s) 45
StyD4I CCNGG 4 cut(s) 199, 524, 628, 714
TaaI ACNGT 1 cut(s) 683
TaiI ACGT 3 cut(s) 272, 373, 490
TaqI TCGA 3 cut(s) 339, 414, 703
TasI AATT 1 cut(s) 450
TatI WGTACW 2 cut(s) 374, 570
TfiI GAWTC 3 cut(s) 124, 404, 520
Tru1I TTAA 2 cut(s) 129, 150
Tru9I TTAA 2 cut(s) 129, 150
TseI GCWGC 3 cut(s) 181, 596, 599
Vha464I CTTAAG 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 197
XceI RCATGY 1 cut(s) 358
XmiI GTMKAC 1 cut(s) 414
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.