Rh6BG293500

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000789
Physical Location & Seq
Reverse (-)
52100025 .. 52109701
9677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG293500.1

Sequence Viewer

Length: 729 bp
ATGGCGGTTGAAGGTCCGGGCTCCGGTAGCGGCGAATCCACGAAGAGGAAAACGAAAGGGAAAAGGTCGGGGCTGAGAGCTGAGCTATATTTAAGCCTCGAAAAGCAATTCCCAATATTTGCTTTCCACAAGTGTGCACTCTATGTAGTTTTCAATCTTGGTTCTGTTGATGCACATGGATGTGCTAGAAACAAATTTTGGAGCATTTACCCTGATCCATCTCCCTTTCCAACTAATAATTCCAACAAGGTCTTTGTTGATTTGATCCTTAAGCCTACTGAAGATGATATTAAGACTTGTCCTCACAGTTGCGAGTTCCGGCTGCGAGTAGCTTTGGGACCTGGAGAAGATCTAATGTTGTCATCTCGTATCCGGAATACCAACTCTGATGGGAAGCCATTCACATTCACGTTTGTGTATCAGACTTCAGATATCAGTGAAGTTCGTGTAGAAGGCTTGGAGACCCTCGGTTATCTGGACAACATGCAGAACAGGGAAAGTAGTATTGAGCAAGGAGATGCTATAACATTTGAATCGGAAGTGGACAAGATATATATTAGAACTCCTACAAAGATTGCAATTCTGGATCATGAGAAGAAGAGAACGTTTGTGGTACGCCAAAGATGGTCTTCCAGATGCCCGCAAAGGCTATGGCTGATTCTGGAGATGATGAGTACAAACATGTGCTCGATGTGGAGGCTGCTGCTATTGAGAGACCTATCACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

242

Amino Acids

27.68

Weight (kDa)

8.7

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 52 - 206 1.3e-16 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 372
AciI CCGC 3 cut(s) 5, 30, 641
AclI AACGTT 1 cut(s) 605
AclWI GGATC 3 cut(s) 209, 259, 594
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 2 cut(s) 300, 411
AfaI GTAC 2 cut(s) 615, 676
AfiI CCNNNNNNNGG 2 cut(s) 23, 45
AflII CTTAAG 1 cut(s) 269
AflIII ACRYGT 1 cut(s) 681
AgsI TTSAA 3 cut(s) 11, 154, 533
AjnI CCWGG 1 cut(s) 340
AjuI GAANNNNNNNTTGG 4 cut(s) 181, 213, 223, 255
AleI CACNNNNGTG 2 cut(s) 132, 413
AluBI AGCT 3 cut(s) 80, 85, 332
AluI AGCT 3 cut(s) 80, 85, 332
Alw21I GWGCWC 2 cut(s) 139, 689
Alw26I GTCTC 2 cut(s) 455, 708
Alw44I GTGCAC 1 cut(s) 135
AlwI GGATC 3 cut(s) 209, 259, 594
Aor13HI TCCGGA 1 cut(s) 372
ApaLI GTGCAC 1 cut(s) 135
ApeKI GCWGC 3 cut(s) 322, 700, 703
ApoI RAATTY 1 cut(s) 194
Asp700I GAANNNNTTC 1 cut(s) 398
AspS9I GGNCC 2 cut(s) 14, 338
AsuC2I CCSGG 1 cut(s) 18
AvaII GGWCC 2 cut(s) 14, 338
BaeGI GKGCMC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 621
Bbv12I GWGCWC 2 cut(s) 139, 689
BbvI GCAGC 3 cut(s) 309, 687, 690
BccI CCATC 3 cut(s) 226, 383, 618
BciT130I CCWGG 1 cut(s) 342
BciVI GTATCC 1 cut(s) 380
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 455, 708
BfaI CTAG 1 cut(s) 186
BfrI CTTAAG 1 cut(s) 269
BfuI GTATCC 1 cut(s) 380
BglII AGATCT 1 cut(s) 349
BisI GCNGC 4 cut(s) 31, 323, 701, 704
BlpI GCTNAGC 1 cut(s) 81
BlsI GCNGC 4 cut(s) 32, 324, 702, 705
Bme1390I CCNGG 2 cut(s) 18, 342
Bme18I GGWCC 2 cut(s) 14, 338
BmgT120I GGNCC 2 cut(s) 14, 338
BmiI GGNNCC 2 cut(s) 22, 339
BmrFI CCNGG 2 cut(s) 18, 342
BmsI GCATC 3 cut(s) 160, 508, 626
BpiI GAAGAC 1 cut(s) 621
BpmI CTGGAG 2 cut(s) 363, 683
Bpu1102I GCTNAGC 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 18
BsaI GGTCTC 2 cut(s) 455, 708
BsaJI CCNNGG 1 cut(s) 466
BsaWI WCCGGW 2 cut(s) 23, 372
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 45
BseAI TCCGGA 1 cut(s) 372
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 466
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 2 cut(s) 23, 45
BseMII CTCAG 2 cut(s) 65, 72
BseSI GKGCMC 1 cut(s) 139
BseXI GCAGC 3 cut(s) 309, 687, 690
BsiHKAI GWGCWC 2 cut(s) 139, 689
BsiSI CCGG 4 cut(s) 17, 24, 319, 373
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 23, 45
BsmAI GTCTC 2 cut(s) 455, 708
BsmFI GGGAC 1 cut(s) 351
Bso31I GGTCTC 2 cut(s) 455, 708
Bsp1286I GDGCHC 3 cut(s) 23, 139, 689
Bsp13I TCCGGA 1 cut(s) 372
Bsp143I GATC 4 cut(s) 214, 264, 349, 586
Bsp1720I GCTNAGC 1 cut(s) 81
BspACI CCGC 3 cut(s) 5, 30, 641
BspCNI CTCAG 2 cut(s) 66, 73
BspEI TCCGGA 1 cut(s) 372
BspHI TCATGA 1 cut(s) 589
BspLI GGNNCC 2 cut(s) 22, 339
BspPI GGATC 3 cut(s) 209, 259, 594
BspTI CTTAAG 1 cut(s) 269
BspTNI GGTCTC 2 cut(s) 455, 708
BssECI CCNNGG 1 cut(s) 466
BssMI GATC 4 cut(s) 214, 264, 349, 586
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 308
Bst6I CTCTTC 2 cut(s) 38, 593
BstAFI CTTAAG 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 641
BstDEI CTNAG 2 cut(s) 74, 81
BstF5I GGATG 1 cut(s) 185
BstKTI GATC 4 cut(s) 217, 267, 352, 589
BstMAI GTCTC 2 cut(s) 455, 708
BstMBI GATC 4 cut(s) 214, 264, 349, 586
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 2 cut(s) 487, 685
BstSCI CCNGG 2 cut(s) 16, 340
BstSLI GKGCMC 1 cut(s) 139
BstV1I GCAGC 3 cut(s) 309, 687, 690
BstV2I GAAGAC 1 cut(s) 621
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuI GTATCC 1 cut(s) 380
BtsCI GGATG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 442
Cac8I GCNNGC 1 cut(s) 641
CciI TCATGA 1 cut(s) 589
Cfr13I GGNCC 2 cut(s) 14, 338
Csp6I GTAC 2 cut(s) 614, 675
CviAII CATG 4 cut(s) 176, 484, 590, 682
CviQI GTAC 2 cut(s) 614, 675
DdeI CTNAG 2 cut(s) 74, 81
DpnI GATC 4 cut(s) 216, 266, 351, 588
DpnII GATC 4 cut(s) 214, 264, 349, 586
Eam1104I CTCTTC 2 cut(s) 38, 593
EarI CTCTTC 2 cut(s) 38, 593
Eco24I GRGCYC 1 cut(s) 23
Eco31I GGTCTC 2 cut(s) 455, 708
Eco32I GATATC 1 cut(s) 433
Eco47I GGWCC 2 cut(s) 14, 338
Eco57I CTGAAG 2 cut(s) 300, 411
EcoO109I RGGNCCY 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 340
EcoRV GATATC 1 cut(s) 433
EcoT38I GRGCYC 1 cut(s) 23
FaeI CATG 4 cut(s) 179, 487, 593, 685
FalI AAGNNNNNCTT 2 cut(s) 613, 645
FaqI GGGAC 1 cut(s) 351
FatI CATG 4 cut(s) 175, 483, 589, 681
FauI CCCGC 1 cut(s) 648
Fnu4HI GCNGC 4 cut(s) 31, 323, 701, 704
FokI GGATG 1 cut(s) 192
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 4 cut(s) 31, 323, 701, 704
FspBI CTAG 1 cut(s) 186
GluI GCNGC 4 cut(s) 31, 323, 701, 704
GsuI CTGGAG 2 cut(s) 363, 683
HapII CCGG 4 cut(s) 17, 24, 319, 373
Hin1II CATG 4 cut(s) 179, 487, 593, 685
HinfI GANTC 3 cut(s) 35, 533, 658
HpaII CCGG 4 cut(s) 17, 24, 319, 373
Hpy166II GTNNAC 2 cut(s) 137, 544
Hpy188I TCNGA 4 cut(s) 388, 423, 430, 538
Hpy188III TCNNGA 6 cut(s) 373, 476, 584, 590, 633, 662
Hpy8I GTNNAC 2 cut(s) 137, 544
HpyAV CCTTC 2 cut(s) 5, 446
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 2 cut(s) 410, 605
HpyCH4V TGCA 4 cut(s) 137, 173, 487, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpyF3I CTNAG 2 cut(s) 74, 81
HpySE526I ACGT 2 cut(s) 410, 605
Hsp92II CATG 4 cut(s) 179, 487, 593, 685
Kpn2I TCCGGA 1 cut(s) 372
Kzo9I GATC 4 cut(s) 214, 264, 349, 586
LmnI GCTCC 2 cut(s) 26, 201
Lsp1109I GCAGC 3 cut(s) 309, 687, 690
LweI GCATC 3 cut(s) 160, 508, 626
MaeI CTAG 1 cut(s) 186
MaeII ACGT 2 cut(s) 410, 605
MalI GATC 4 cut(s) 216, 266, 351, 588
MboI GATC 4 cut(s) 214, 264, 349, 586
MboII GAAGA 6 cut(s) 55, 293, 359, 607, 610, 621
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 3 cut(s) 23, 139, 689
MluCI AATT 4 cut(s) 107, 194, 238, 579
MmeI TCCRAC 2 cut(s) 254, 267
MnlI CCTC 5 cut(s) 39, 107, 312, 476, 690
MroI TCCGGA 1 cut(s) 372
MroXI GAANNNNTTC 1 cut(s) 398
MseI TTAA 3 cut(s) 92, 270, 291
MslI CAYNNNNRTG 4 cut(s) 132, 178, 180, 413
MspCI CTTAAG 1 cut(s) 269
MspI CCGG 4 cut(s) 17, 24, 319, 373
MspR9I CCNGG 2 cut(s) 18, 342
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 27
NciI CCSGG 1 cut(s) 18
NdeII GATC 4 cut(s) 214, 264, 349, 586
NlaIII CATG 4 cut(s) 179, 487, 593, 685
NlaIV GGNNCC 2 cut(s) 22, 339
NspI RCATGY 2 cut(s) 487, 685
OliI CACNNNNGTG 2 cut(s) 132, 413
PagI TCATGA 1 cut(s) 589
PciI ACATGT 1 cut(s) 681
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 3 cut(s) 35, 533, 658
PkrI GCNGC 4 cut(s) 32, 324, 702, 705
PpuMI RGGWCCY 1 cut(s) 338
PscI ACATGT 1 cut(s) 681
Psp1406I AACGTT 1 cut(s) 605
Psp5II RGGWCCY 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 2 cut(s) 22, 339
PspPI GGNCC 2 cut(s) 14, 338
PspPPI RGGWCCY 1 cut(s) 338
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 2 cut(s) 615, 676
RsaNI GTAC 2 cut(s) 614, 675
RseI CAYNNNNRTG 4 cut(s) 132, 178, 180, 413
SaqAI TTAA 3 cut(s) 92, 270, 291
SatI GCNGC 4 cut(s) 31, 323, 701, 704
Sau3AI GATC 4 cut(s) 214, 264, 349, 586
Sau96I GGNCC 2 cut(s) 14, 338
ScrFI CCNGG 2 cut(s) 18, 342
SduI GDGCHC 3 cut(s) 23, 139, 689
SfaNI GCATC 3 cut(s) 160, 508, 626
SinI GGWCC 2 cut(s) 14, 338
SmiMI CAYNNNNRTG 4 cut(s) 132, 178, 180, 413
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 4 cut(s) 107, 194, 238, 579
SsiI CCGC 3 cut(s) 5, 30, 641
SspI AATATT 1 cut(s) 117
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 2 cut(s) 16, 340
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 2 cut(s) 413, 608
TaqI TCGA 2 cut(s) 99, 689
TasI AATT 4 cut(s) 107, 194, 238, 579
TatI WGTACW 1 cut(s) 674
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 3 cut(s) 35, 533, 658
Tru1I TTAA 3 cut(s) 92, 270, 291
Tru9I TTAA 3 cut(s) 92, 270, 291
TscAI CASTG 1 cut(s) 442
TseI GCWGC 3 cut(s) 322, 700, 703
TspRI CASTG 1 cut(s) 442
Vha464I CTTAAG 1 cut(s) 269
VneI GTGCAC 1 cut(s) 135
VpaK11BI GGWCC 2 cut(s) 14, 338
XapI RAATTY 1 cut(s) 194
XceI RCATGY 2 cut(s) 487, 685
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.