RLG00000009179

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000789
Physical Location & Seq
Reverse (-)
48203627 .. 48210961
7335 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009179

Sequence Viewer

Length: 993 bp
ATGAGTAGCGAAAAGGTTCCCAATCCCATTGCTACTACTGCTGCGAACGCCAAGACCACTCCTCCTCACGGCGTCGAGTTCGTTAAGGGCGTCAATGGCCTCGACAAGGTCGTCCTTCGTGATCCGCGCGGCAGTCTCGCCGAGGTGTATTTGTATGGGGGTCATGTAACATCATGGAAGAATGACCAGGGGGAGGAATTGCTATTTGTCATCATTTTTTCCATAAGTTCTCATTGTCTATTTATTTACAGTTCTGGGAATTTTCCTGATTGTTTTTCAAATATTGGTTCTCTTGATGCACATGGATTTGCTAGAAACAGATTTTGGAGCATTGACCCTGATCCATCTCCTTTTCCAACAAATACTTCCAATAAGGTTTTTGTTGATTTGATTCTTAAGCCTACTGAAGAAGATATTAAGACTTGGCCTCATAGTTATGAGTTCCGACTGCGAGTAGCTTTGGGACCTGGAGGAGATCTGATGTTGACATCTCGCATCCGGAATACCAACTCTGATGGGAAGCCATTCACATTCACGTTTGCTTATCATACTTATTTCTCTGTTTCAGATATAAGTGAAGTTCGTGTAGAAGGCTTGGAGACCCTCGATTATCTGGACAACATGCAGAACAGGAAACGTTGTACTGAGCAAGGGGATGCTATAACATTTGAATCGGAGGTTGACAAGATATATCTTAGCACTCCTACAAAGATTGCAATTCTGGATCATGAGAAGAAGAGAACATTTGTAATACGTAAAGATGGGCTTCCAGATGCTGTGGTGTGGAATCCCTGGGATAAGAAGGCAAAGGCTATGGCTGATTTTGGAGATGATGAGTACAAACATATGCTCTGTGTGGAGGCTGCTGCTATTGAGAGACCCATCACATTGAAACCCGGAGAGGAGTGGAGAGGAAGGCAGGAGCTTTCAGCTGTTCCTTCCAGTTACTGTAGTGGGCAACTTGATCCTCGAAAGGTTCTCCAGGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

331

Amino Acids

37.04

Weight (kDa)

5.68

Isoelectric Point (pI)

30.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 35 - 309 5.3e-58 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccII CGCG 2 cut(s) 127, 129
AccIII TCCGGA 1 cut(s) 498
AciI CCGC 2 cut(s) 125, 129
AclI AACGTT 1 cut(s) 637
AclWI GGATC 4 cut(s) 116, 335, 732, 959
AcsI RAATTY 1 cut(s) 259
AcuI CTGAAG 1 cut(s) 426
AcyI GRCGYC 2 cut(s) 72, 90
AfaI GTAC 2 cut(s) 643, 839
AfiI CCNNNNNNNGG 3 cut(s) 68, 106, 193
AflII CTTAAG 1 cut(s) 395
AgsI TTSAA 3 cut(s) 279, 671, 892
AjnI CCWGG 4 cut(s) 186, 466, 791, 981
AjuI GAANNNNNNNTTGG 4 cut(s) 307, 339, 349, 381
AluBI AGCT 3 cut(s) 458, 925, 932
AluI AGCT 3 cut(s) 458, 925, 932
Alw26I GTCTC 3 cut(s) 140, 593, 871
AlwI GGATC 4 cut(s) 116, 335, 732, 959
AlwNI CAGNNNCTG 2 cut(s) 776, 948
Aor13HI TCCGGA 1 cut(s) 498
AoxI GGCC 2 cut(s) 97, 425
ApeKI GCWGC 3 cut(s) 41, 863, 866
ApoI RAATTY 1 cut(s) 259
Asp700I GAANNNNTTC 2 cut(s) 15, 524
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 464
AsuC2I CCSGG 1 cut(s) 897
AvaII GGWCC 1 cut(s) 464
BbvI GCAGC 3 cut(s) 28, 850, 853
BccI CCATC 4 cut(s) 352, 509, 755, 890
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 4 cut(s) 188, 468, 793, 983
BcnI CCSGG 1 cut(s) 897
BcoDI GTCTC 3 cut(s) 140, 593, 871
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 949
BfrI CTTAAG 1 cut(s) 395
BglII AGATCT 1 cut(s) 475
BisI GCNGC 4 cut(s) 42, 130, 864, 867
BlsI GCNGC 4 cut(s) 43, 131, 865, 868
Bme1390I CCNGG 5 cut(s) 188, 468, 793, 897, 983
Bme18I GGWCC 1 cut(s) 464
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 2 cut(s) 18, 465
BmrFI CCNGG 5 cut(s) 188, 468, 793, 897, 983
BmsI GCATC 4 cut(s) 286, 504, 646, 763
BpmI CTGGAG 2 cut(s) 489, 965
BpuMI CCSGG 1 cut(s) 897
BsaAI YACGTR 1 cut(s) 755
BsaHI GRCGYC 2 cut(s) 72, 90
BsaI GGTCTC 2 cut(s) 593, 871
BsaJI CCNNGG 5 cut(s) 141, 187, 791, 792, 982
BsaWI WCCGGW 1 cut(s) 498
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 106, 193
Bse1I ACTGG 1 cut(s) 942
Bse3DI GCAATG 1 cut(s) 27
BseAI TCCGGA 1 cut(s) 498
BseBI CCWGG 4 cut(s) 188, 468, 793, 983
BseDI CCNNGG 5 cut(s) 141, 187, 791, 792, 982
BseGI GGATG 2 cut(s) 495, 661
BseLI CCNNNNNNNGG 3 cut(s) 68, 106, 193
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 636
BseNI ACTGG 1 cut(s) 942
BseRI GAGGAG 4 cut(s) 51, 54, 486, 917
BseXI GCAGC 3 cut(s) 28, 850, 853
Bsh1236I CGCG 2 cut(s) 127, 129
BshFI GGCC 2 cut(s) 99, 427
BsiSI CCGG 2 cut(s) 499, 897
BslFI GGGAC 1 cut(s) 477
BslI CCNNNNNNNGG 3 cut(s) 68, 106, 193
BsmAI GTCTC 3 cut(s) 140, 593, 871
BsmFI GGGAC 1 cut(s) 477
BsnI GGCC 2 cut(s) 99, 427
Bso31I GGTCTC 2 cut(s) 593, 871
Bsp13I TCCGGA 1 cut(s) 498
Bsp143I GATC 5 cut(s) 121, 340, 475, 724, 964
BspACI CCGC 2 cut(s) 125, 129
BspANI GGCC 2 cut(s) 99, 427
BspCNI CTCAG 1 cut(s) 637
BspEI TCCGGA 1 cut(s) 498
BspFNI CGCG 2 cut(s) 127, 129
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 2 cut(s) 18, 465
BspPI GGATC 4 cut(s) 116, 335, 732, 959
BspTI CTTAAG 1 cut(s) 395
BspTNI GGTCTC 2 cut(s) 593, 871
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 1 cut(s) 942
BssECI CCNNGG 5 cut(s) 141, 187, 791, 792, 982
BssMI GATC 5 cut(s) 121, 340, 475, 724, 964
BssNI GRCGYC 2 cut(s) 72, 90
Bst2UI CCWGG 4 cut(s) 188, 468, 793, 983
Bst4CI ACNGT 2 cut(s) 251, 950
Bst6I CTCTTC 1 cut(s) 731
BstACI GRCGYC 2 cut(s) 72, 90
BstAFI CTTAAG 1 cut(s) 395
BstBAI YACGTR 1 cut(s) 755
BstDEI CTNAG 2 cut(s) 645, 695
BstENI CCTNNNNNAGG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 495, 661
BstFNI CGCG 2 cut(s) 127, 129
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 5 cut(s) 124, 343, 478, 727, 967
BstMAI GTCTC 3 cut(s) 140, 593, 871
BstMBI GATC 5 cut(s) 121, 340, 475, 724, 964
BstMWI GCNNNNNNNGC 3 cut(s) 38, 47, 96
BstNI CCWGG 4 cut(s) 188, 468, 793, 983
BstNSI RCATGY 1 cut(s) 625
BstSCI CCNGG 5 cut(s) 186, 466, 791, 895, 981
BstSFI CTRYAG 1 cut(s) 949
BstSNI TACGTA 1 cut(s) 755
BstUI CGCG 2 cut(s) 127, 129
BstV1I GCAGC 3 cut(s) 28, 850, 853
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BsuRI GGCC 2 cut(s) 99, 427
BtsCI GGATG 2 cut(s) 495, 661
CaiI CAGNNNCTG 2 cut(s) 776, 948
CciI TCATGA 1 cut(s) 727
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 464
CseI GACGC 2 cut(s) 61, 79
Csp6I GTAC 2 cut(s) 642, 838
CviAII CATG 5 cut(s) 164, 174, 302, 622, 728
CviQI GTAC 2 cut(s) 642, 838
DdeI CTNAG 2 cut(s) 645, 695
DpnI GATC 5 cut(s) 123, 342, 477, 726, 966
DpnII GATC 5 cut(s) 121, 340, 475, 724, 964
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 731
EarI CTCTTC 1 cut(s) 731
Eco105I TACGTA 1 cut(s) 755
Eco31I GGTCTC 2 cut(s) 593, 871
Eco47I GGWCC 1 cut(s) 464
Eco57I CTGAAG 1 cut(s) 426
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 464
EcoRII CCWGG 4 cut(s) 186, 466, 791, 981
FaeI CATG 5 cut(s) 167, 177, 305, 625, 731
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 1 cut(s) 477
FatI CATG 5 cut(s) 163, 173, 301, 621, 727
FauNDI CATATG 1 cut(s) 846
Fnu4HI GCNGC 4 cut(s) 42, 130, 864, 867
FokI GGATG 2 cut(s) 482, 668
Fsp4HI GCNGC 4 cut(s) 42, 130, 864, 867
FspBI CTAG 1 cut(s) 312
GlaI GCGC 1 cut(s) 128
GluI GCNGC 4 cut(s) 42, 130, 864, 867
GsuI CTGGAG 2 cut(s) 489, 965
HaeIII GGCC 2 cut(s) 99, 427
HapII CCGG 2 cut(s) 499, 897
HgaI GACGC 2 cut(s) 61, 79
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 2 cut(s) 72, 90
Hin1II CATG 5 cut(s) 167, 177, 305, 625, 731
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HincII GTYRAC 2 cut(s) 486, 682
HindII GTYRAC 2 cut(s) 486, 682
HinfI GANTC 3 cut(s) 391, 671, 787
HpaII CCGG 2 cut(s) 499, 897
Hpy166II GTNNAC 2 cut(s) 486, 682
Hpy188I TCNGA 5 cut(s) 446, 480, 514, 568, 676
Hpy188III TCNNGA 8 cut(s) 119, 266, 293, 499, 614, 722, 728, 770
Hpy8I GTNNAC 2 cut(s) 486, 682
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 5 cut(s) 125, 584, 796, 909, 948
HpyCH4III ACNGT 2 cut(s) 251, 950
HpyCH4IV ACGT 3 cut(s) 536, 637, 754
HpyCH4V TGCA 3 cut(s) 299, 625, 716
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 47, 96
HpyF3I CTNAG 2 cut(s) 645, 695
HpySE526I ACGT 3 cut(s) 536, 637, 754
Hsp92I GRCGYC 2 cut(s) 72, 90
Hsp92II CATG 5 cut(s) 167, 177, 305, 625, 731
HspAI GCGC 1 cut(s) 127
Kpn2I TCCGGA 1 cut(s) 498
Kzo9I GATC 5 cut(s) 121, 340, 475, 724, 964
LmnI GCTCC 2 cut(s) 327, 922
Lsp1109I GCAGC 3 cut(s) 28, 850, 853
LweI GCATC 4 cut(s) 286, 504, 646, 763
MaeI CTAG 1 cut(s) 312
MaeII ACGT 3 cut(s) 536, 637, 754
MaeIII GTNAC 2 cut(s) 166, 944
MalI GATC 5 cut(s) 123, 342, 477, 726, 966
MboI GATC 5 cut(s) 121, 340, 475, 724, 964
MboII GAAGA 5 cut(s) 190, 419, 422, 745, 748
MflI RGATCY 1 cut(s) 475
MluCI AATT 3 cut(s) 197, 259, 717
MmeI TCCRAC 2 cut(s) 380, 469
MroI TCCGGA 1 cut(s) 498
MroXI GAANNNNTTC 2 cut(s) 15, 524
MseI TTAA 3 cut(s) 84, 396, 417
MslI CAYNNNNRTG 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 932
MspCI CTTAAG 1 cut(s) 395
MspI CCGG 2 cut(s) 499, 897
MspR9I CCNGG 5 cut(s) 188, 468, 793, 897, 983
MvaI CCWGG 4 cut(s) 188, 468, 793, 983
MvnI CGCG 2 cut(s) 127, 129
MwoI GCNNNNNNNGC 3 cut(s) 38, 47, 96
NciI CCSGG 1 cut(s) 897
NdeI CATATG 1 cut(s) 846
NdeII GATC 5 cut(s) 121, 340, 475, 724, 964
NlaIII CATG 5 cut(s) 167, 177, 305, 625, 731
NlaIV GGNNCC 2 cut(s) 18, 465
NmeAIII GCCGAG 1 cut(s) 166
NspI RCATGY 1 cut(s) 625
PagI TCATGA 1 cut(s) 727
PasI CCCWGGG 1 cut(s) 792
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 108
PdmI GAANNNNTTC 2 cut(s) 15, 524
PfeI GAWTC 3 cut(s) 391, 671, 787
PflFI GACNNNGTC 1 cut(s) 107
PkrI GCNGC 4 cut(s) 43, 131, 865, 868
Ppu21I YACGTR 1 cut(s) 755
PpuMI RGGWCCY 1 cut(s) 464
Psp1406I AACGTT 1 cut(s) 637
Psp5II RGGWCCY 1 cut(s) 464
Psp6I CCWGG 4 cut(s) 186, 466, 791, 981
PspGI CCWGG 4 cut(s) 186, 466, 791, 981
PspN4I GGNNCC 2 cut(s) 18, 465
PspPI GGNCC 1 cut(s) 464
PspPPI RGGWCCY 1 cut(s) 464
PstNI CAGNNNCTG 2 cut(s) 776, 948
PsuI RGATCY 1 cut(s) 475
PsyI GACNNNGTC 1 cut(s) 107
PvuII CAGCTG 1 cut(s) 932
RsaI GTAC 2 cut(s) 643, 839
RsaNI GTAC 2 cut(s) 642, 838
RseI CAYNNNNRTG 1 cut(s) 435
SaqAI TTAA 3 cut(s) 84, 396, 417
SatI GCNGC 4 cut(s) 42, 130, 864, 867
Sau3AI GATC 5 cut(s) 121, 340, 475, 724, 964
Sau96I GGNCC 1 cut(s) 464
ScrFI CCNGG 5 cut(s) 188, 468, 793, 897, 983
SfaNI GCATC 4 cut(s) 286, 504, 646, 763
SfcI CTRYAG 1 cut(s) 949
SinI GGWCC 1 cut(s) 464
SmiMI CAYNNNNRTG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
SnaBI TACGTA 1 cut(s) 755
Sse9I AATT 3 cut(s) 197, 259, 717
SsiI CCGC 2 cut(s) 125, 129
SspI AATATT 1 cut(s) 283
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 5 cut(s) 186, 466, 791, 895, 981
TaaI ACNGT 2 cut(s) 251, 950
TaiI ACGT 3 cut(s) 539, 640, 757
TaqI TCGA 4 cut(s) 75, 102, 606, 970
TasI AATT 3 cut(s) 197, 259, 717
TatI WGTACW 2 cut(s) 641, 837
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 3 cut(s) 391, 671, 787
Tru1I TTAA 3 cut(s) 84, 396, 417
Tru9I TTAA 3 cut(s) 84, 396, 417
TseI GCWGC 3 cut(s) 41, 863, 866
Tth111I GACNNNGTC 1 cut(s) 107
Vha464I CTTAAG 1 cut(s) 395
VpaK11BI GGWCC 1 cut(s) 464
XagI CCTNNNNNAGG 1 cut(s) 104
XapI RAATTY 1 cut(s) 259
XceI RCATGY 1 cut(s) 625
XmnI GAANNNNTTC 2 cut(s) 15, 524
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.