Rh4DG095700

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000789
Physical Location & Seq
Forward (+)
14436774 .. 14443809
7036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG095700.1

Sequence Viewer

Length: 867 bp
ATGTTTTCTTTGATTGTGTATTTGTATGGGGGTCATGTAACATCATGGAAGAATGACCAGGGGGAGGAATTGCTATTTGTCAGCAATAAGGCTATATTTAAGCCTCCAAAAGCAATTCGTGGGGGGATCCCAATTTGCTTTCCACAATTTTCAAATCTTGGTTCTCTTGATGCACATGGATTTGCTAGAAACAGATTTTGGAGCATTGACCCTGATCCATCTCCTTTTCCAACAAATACTTCCAATAAGGTTTTTGTTGATTTGATTCTTAAGCCTACTGAAGAAGATATTAAGACTTGGCCTCATAGTTATGAGTTCCGACTGCGAGTAGCTTTGGGACCTGGAGGAGATCTGATGTTGACATCTCGCATCCGGAATACCAACTCTGATGGGAAGCCATTCACATTCACGTTTGCTTATCATACTTATTTCTCTGTTTCAGATATAAGTGAAGTTCGTGTAGAAGGCTTGGAGACCCTCGATTATCTGGACAACATGCAGAACAGGAAACGTTGTACTGAGCAAGGGGATGCTATAACATTTGAATCGGAGGTTGACAAGATATATCTTAGCACTCCTACAAAGATTGCAATTCTGGATCATGAGAAGAAGAGAACATTTGTAATACGTAAAGATGGGCTTCCAGATGCTGTGGTGTGGAATCCCTGGGATAAGAAGGCAAAGGCTATGGCTGATTTTGGAGATGATGAGTACAAACATATGCTCTGTGTGGAGGCTGCTGCTATTGAGAGACCCATCACATTGAAACCCGGAGAGGAGTGGAGAGGAAGGCAGGAGCTTTCAGCTGTTCCTTCCAGTTACTGTAGTGGGCAACTTGATCCTCGAAAGGTTCTCCAGGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

288

Amino Acids

32.68

Weight (kDa)

6.11

Isoelectric Point (pI)

30.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 3 - 267 7.5e-69 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 372
AclI AACGTT 1 cut(s) 511
AclWI GGATC 5 cut(s) 121, 134, 209, 606, 833
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 2 cut(s) 517, 713
AfiI CCNNNNNNNGG 1 cut(s) 64
AflII CTTAAG 1 cut(s) 269
AgsI TTSAA 3 cut(s) 153, 545, 766
AjnI CCWGG 4 cut(s) 57, 340, 665, 855
AjuI GAANNNNNNNTTGG 4 cut(s) 181, 213, 223, 255
AluBI AGCT 3 cut(s) 332, 799, 806
AluI AGCT 3 cut(s) 332, 799, 806
Alw26I GTCTC 2 cut(s) 467, 745
AlwI GGATC 5 cut(s) 121, 134, 209, 606, 833
AlwNI CAGNNNCTG 2 cut(s) 650, 822
Aor13HI TCCGGA 1 cut(s) 372
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 2 cut(s) 737, 740
Asp700I GAANNNNTTC 1 cut(s) 398
AspS9I GGNCC 1 cut(s) 338
AsuC2I CCSGG 1 cut(s) 771
AvaII GGWCC 1 cut(s) 338
BamHI GGATCC 1 cut(s) 126
BbvI GCAGC 2 cut(s) 724, 727
BccI CCATC 4 cut(s) 226, 383, 629, 764
BciT130I CCWGG 4 cut(s) 59, 342, 667, 857
BcnI CCSGG 1 cut(s) 771
BcoDI GTCTC 2 cut(s) 467, 745
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 823
BfrI CTTAAG 1 cut(s) 269
BglII AGATCT 1 cut(s) 349
BisI GCNGC 2 cut(s) 738, 741
BlsI GCNGC 2 cut(s) 739, 742
Bme1390I CCNGG 5 cut(s) 59, 342, 667, 771, 857
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 2 cut(s) 128, 339
BmrFI CCNGG 5 cut(s) 59, 342, 667, 771, 857
BmsI GCATC 4 cut(s) 160, 378, 520, 637
BpmI CTGGAG 2 cut(s) 363, 839
BpuMI CCSGG 1 cut(s) 771
BsaAI YACGTR 1 cut(s) 629
BsaI GGTCTC 2 cut(s) 467, 745
BsaJI CCNNGG 4 cut(s) 58, 665, 666, 856
BsaWI WCCGGW 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 816
BseAI TCCGGA 1 cut(s) 372
BseBI CCWGG 4 cut(s) 59, 342, 667, 857
BseDI CCNNGG 4 cut(s) 58, 665, 666, 856
BseGI GGATG 2 cut(s) 369, 535
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 510
BseNI ACTGG 1 cut(s) 816
BseRI GAGGAG 2 cut(s) 360, 791
BseXI GCAGC 2 cut(s) 724, 727
BshFI GGCC 1 cut(s) 301
BsiSI CCGG 2 cut(s) 373, 771
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 2 cut(s) 467, 745
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 1 cut(s) 301
Bso31I GGTCTC 2 cut(s) 467, 745
Bsp13I TCCGGA 1 cut(s) 372
Bsp143I GATC 5 cut(s) 126, 214, 349, 598, 838
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 511
BspEI TCCGGA 1 cut(s) 372
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 2 cut(s) 128, 339
BspPI GGATC 5 cut(s) 121, 134, 209, 606, 833
BspTI CTTAAG 1 cut(s) 269
BspTNI GGTCTC 2 cut(s) 467, 745
BsrI ACTGG 1 cut(s) 816
BssECI CCNNGG 4 cut(s) 58, 665, 666, 856
BssMI GATC 5 cut(s) 126, 214, 349, 598, 838
Bst2UI CCWGG 4 cut(s) 59, 342, 667, 857
Bst4CI ACNGT 1 cut(s) 824
Bst6I CTCTTC 1 cut(s) 605
BstAFI CTTAAG 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 629
BstDEI CTNAG 2 cut(s) 519, 569
BstF5I GGATG 2 cut(s) 369, 535
BstKTI GATC 5 cut(s) 129, 217, 352, 601, 841
BstMAI GTCTC 2 cut(s) 467, 745
BstMBI GATC 5 cut(s) 126, 214, 349, 598, 838
BstNI CCWGG 4 cut(s) 59, 342, 667, 857
BstNSI RCATGY 1 cut(s) 499
BstSCI CCNGG 5 cut(s) 57, 340, 665, 769, 855
BstSFI CTRYAG 1 cut(s) 823
BstSNI TACGTA 1 cut(s) 629
BstV1I GCAGC 2 cut(s) 724, 727
BstX2I RGATCY 2 cut(s) 126, 349
BstYI RGATCY 2 cut(s) 126, 349
BsuRI GGCC 1 cut(s) 301
BtsCI GGATG 2 cut(s) 369, 535
CaiI CAGNNNCTG 2 cut(s) 650, 822
CciI TCATGA 1 cut(s) 601
Cfr13I GGNCC 1 cut(s) 338
Csp6I GTAC 2 cut(s) 516, 712
CviAII CATG 5 cut(s) 35, 45, 176, 496, 602
CviQI GTAC 2 cut(s) 516, 712
DdeI CTNAG 2 cut(s) 519, 569
DpnI GATC 5 cut(s) 128, 216, 351, 600, 840
DpnII GATC 5 cut(s) 126, 214, 349, 598, 838
Eam1104I CTCTTC 1 cut(s) 605
EarI CTCTTC 1 cut(s) 605
Eco105I TACGTA 1 cut(s) 629
Eco31I GGTCTC 2 cut(s) 467, 745
Eco47I GGWCC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 300
EcoO109I RGGNCCY 1 cut(s) 338
EcoRII CCWGG 4 cut(s) 57, 340, 665, 855
FaeI CATG 5 cut(s) 38, 48, 179, 499, 605
FalI AAGNNNNNCTT 2 cut(s) 624, 656
FaqI GGGAC 1 cut(s) 351
FatI CATG 5 cut(s) 34, 44, 175, 495, 601
FauNDI CATATG 1 cut(s) 720
Fnu4HI GCNGC 2 cut(s) 738, 741
FokI GGATG 2 cut(s) 356, 542
Fsp4HI GCNGC 2 cut(s) 738, 741
FspBI CTAG 1 cut(s) 186
GluI GCNGC 2 cut(s) 738, 741
GsuI CTGGAG 2 cut(s) 363, 839
HaeIII GGCC 1 cut(s) 301
HapII CCGG 2 cut(s) 373, 771
Hin1II CATG 5 cut(s) 38, 48, 179, 499, 605
HincII GTYRAC 2 cut(s) 360, 556
HindII GTYRAC 2 cut(s) 360, 556
HinfI GANTC 3 cut(s) 265, 545, 661
HpaII CCGG 2 cut(s) 373, 771
Hpy166II GTNNAC 2 cut(s) 360, 556
Hpy188I TCNGA 5 cut(s) 320, 354, 388, 442, 550
Hpy188III TCNNGA 6 cut(s) 167, 373, 488, 596, 602, 644
Hpy8I GTNNAC 2 cut(s) 360, 556
HpyAV CCTTC 4 cut(s) 458, 670, 783, 822
HpyCH4III ACNGT 1 cut(s) 824
HpyCH4IV ACGT 3 cut(s) 410, 511, 628
HpyCH4V TGCA 3 cut(s) 173, 499, 590
HpyF3I CTNAG 2 cut(s) 519, 569
HpySE526I ACGT 3 cut(s) 410, 511, 628
Hsp92II CATG 5 cut(s) 38, 48, 179, 499, 605
Kpn2I TCCGGA 1 cut(s) 372
Kzo9I GATC 5 cut(s) 126, 214, 349, 598, 838
LmnI GCTCC 2 cut(s) 201, 796
Lsp1109I GCAGC 2 cut(s) 724, 727
LweI GCATC 4 cut(s) 160, 378, 520, 637
MaeI CTAG 1 cut(s) 186
MaeII ACGT 3 cut(s) 410, 511, 628
MaeIII GTNAC 2 cut(s) 37, 818
MalI GATC 5 cut(s) 128, 216, 351, 600, 840
MboI GATC 5 cut(s) 126, 214, 349, 598, 838
MboII GAAGA 5 cut(s) 61, 293, 296, 619, 622
MflI RGATCY 2 cut(s) 126, 349
MluCI AATT 5 cut(s) 68, 114, 132, 146, 591
MmeI TCCRAC 2 cut(s) 254, 343
MroI TCCGGA 1 cut(s) 372
MroXI GAANNNNTTC 1 cut(s) 398
MseI TTAA 3 cut(s) 99, 270, 291
MslI CAYNNNNRTG 1 cut(s) 309
MspA1I CMGCKG 1 cut(s) 806
MspCI CTTAAG 1 cut(s) 269
MspI CCGG 2 cut(s) 373, 771
MspR9I CCNGG 5 cut(s) 59, 342, 667, 771, 857
MvaI CCWGG 4 cut(s) 59, 342, 667, 857
NciI CCSGG 1 cut(s) 771
NdeI CATATG 1 cut(s) 720
NdeII GATC 5 cut(s) 126, 214, 349, 598, 838
NlaIII CATG 5 cut(s) 38, 48, 179, 499, 605
NlaIV GGNNCC 2 cut(s) 128, 339
NspI RCATGY 1 cut(s) 499
PagI TCATGA 1 cut(s) 601
PasI CCCWGGG 1 cut(s) 666
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 3 cut(s) 265, 545, 661
PkrI GCNGC 2 cut(s) 739, 742
Ppu21I YACGTR 1 cut(s) 629
PpuMI RGGWCCY 1 cut(s) 338
Psp1406I AACGTT 1 cut(s) 511
Psp5II RGGWCCY 1 cut(s) 338
Psp6I CCWGG 4 cut(s) 57, 340, 665, 855
PspGI CCWGG 4 cut(s) 57, 340, 665, 855
PspN4I GGNNCC 2 cut(s) 128, 339
PspPI GGNCC 1 cut(s) 338
PspPPI RGGWCCY 1 cut(s) 338
PstNI CAGNNNCTG 2 cut(s) 650, 822
PsuI RGATCY 2 cut(s) 126, 349
PvuII CAGCTG 1 cut(s) 806
RsaI GTAC 2 cut(s) 517, 713
RsaNI GTAC 2 cut(s) 516, 712
RseI CAYNNNNRTG 1 cut(s) 309
SaqAI TTAA 3 cut(s) 99, 270, 291
SatI GCNGC 2 cut(s) 738, 741
Sau3AI GATC 5 cut(s) 126, 214, 349, 598, 838
Sau96I GGNCC 1 cut(s) 338
ScrFI CCNGG 5 cut(s) 59, 342, 667, 771, 857
SfaNI GCATC 4 cut(s) 160, 378, 520, 637
SfcI CTRYAG 1 cut(s) 823
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SnaBI TACGTA 1 cut(s) 629
Sse9I AATT 5 cut(s) 68, 114, 132, 146, 591
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 5 cut(s) 57, 340, 665, 769, 855
TaaI ACNGT 1 cut(s) 824
TaiI ACGT 3 cut(s) 413, 514, 631
TaqI TCGA 2 cut(s) 480, 844
TasI AATT 5 cut(s) 68, 114, 132, 146, 591
TatI WGTACW 2 cut(s) 515, 711
TfiI GAWTC 3 cut(s) 265, 545, 661
Tru1I TTAA 3 cut(s) 99, 270, 291
Tru9I TTAA 3 cut(s) 99, 270, 291
TseI GCWGC 2 cut(s) 737, 740
Vha464I CTTAAG 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 338
XceI RCATGY 1 cut(s) 499
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.