RLG00000032366

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000789
Physical Location & Seq
Reverse (-)
14073894 .. 14076455
2562 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032366

Sequence Viewer

Length: 567 bp
ATGCAGAACAGGAAATGTTGTACTGAGCAAGGGGACGCTATAACATTTGAATCGGAGGTGGACAAGATATATCTTAGCACTCCTACAAAGATTGCAATTATGGATCATGAGAAGAACAGAACATTTGTAATACGCAAAGATGGTCTTCCAGATGCCGTGGTGTGGAATCCTTGGGATAAGAAGGCAAAGGCTATGGCTGATTTTGGAGATAATGAGTACAAACACATGCTTTCTGTGGAGGCTGCTGCTATTGAGAGACCTATCACATTGAAACCTGGAGACGAGTGGAAAGGGTGGCAGGAGCAAGGGTCGATGCTTTTTTGGGCAATGATCATGGCCGATGTGCTAGTAAACTTCTTTCCGCATACACAGAAGGTGATATTGAAGAAATCAAATGACTTGCTCAGTCAAGCGCAGTTTCTCATCTTGATCACATGTTTCACTAAACTGAAATGGCTGCAGGTCATCAGACACGCCAGGAAACTGCCTACAGGTGATGTCAGTGGACTAAAGACAAATGTGTCTAAGGAGCAAGAAGAAGAATTGGATGAAGTTGACCTTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

189

Amino Acids

21.6

Weight (kDa)

5.85

Isoelectric Point (pI)

25.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 8 - 101 1.3e-19 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 520
Acc36I ACCTGC 1 cut(s) 451
AciI CCGC 1 cut(s) 362
AclWI GGATC 1 cut(s) 111
AcoI YGGCCR 1 cut(s) 336
AfaI GTAC 2 cut(s) 22, 218
AfiI CCNNNNNNNGG 1 cut(s) 162
AflIII ACRYGT 1 cut(s) 434
AgsI TTSAA 3 cut(s) 50, 271, 385
AjnI CCWGG 2 cut(s) 274, 476
Alw26I GTCTC 2 cut(s) 250, 273
AlwI GGATC 1 cut(s) 111
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 3 cut(s) 242, 245, 457
AspLEI GCGC 1 cut(s) 415
AsuHPI GGTGA 2 cut(s) 388, 506
BbsI GAAGAC 1 cut(s) 137
BbvI GCAGC 3 cut(s) 229, 232, 444
BccI CCATC 1 cut(s) 134
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 2 cut(s) 276, 478
BclI TGATCA 2 cut(s) 330, 429
BcoDI GTCTC 2 cut(s) 250, 273
BfaI CTAG 1 cut(s) 347
BfmI CTRYAG 2 cut(s) 458, 489
BfuAI ACCTGC 1 cut(s) 451
BisI GCNGC 3 cut(s) 243, 246, 458
BlsI GCNGC 3 cut(s) 244, 247, 459
Bme1390I CCNGG 2 cut(s) 276, 478
BmrFI CCNGG 2 cut(s) 276, 478
BmsI GCATC 2 cut(s) 142, 303
BpiI GAAGAC 1 cut(s) 137
BpmI CTGGAG 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 250
BsaJI CCNNGG 2 cut(s) 156, 170
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 333
BseBI CCWGG 2 cut(s) 276, 478
BseDI CCNNGG 2 cut(s) 156, 170
BseGI GGATG 1 cut(s) 553
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 2 cut(s) 15, 418
BseXI GCAGC 3 cut(s) 229, 232, 444
BshFI GGCC 1 cut(s) 338
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 2 cut(s) 250, 273
BsmBI CGTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 47
BsnI GGCC 1 cut(s) 338
Bso31I GGTCTC 1 cut(s) 250
Bsp143I GATC 3 cut(s) 103, 330, 429
BspACI CCGC 1 cut(s) 362
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 2 cut(s) 16, 417
BspHI TCATGA 1 cut(s) 106
BspMAI CTGCAG 1 cut(s) 462
BspMI ACCTGC 1 cut(s) 451
BspPI GGATC 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 333
BssECI CCNNGG 2 cut(s) 156, 170
BssMI GATC 3 cut(s) 103, 330, 429
BssT1I CCWWGG 1 cut(s) 170
Bst2UI CCWGG 2 cut(s) 276, 478
BstDEI CTNAG 4 cut(s) 24, 74, 404, 525
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 553
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 3 cut(s) 106, 333, 432
BstMAI GTCTC 2 cut(s) 250, 273
BstMBI GATC 3 cut(s) 103, 330, 429
BstNI CCWGG 2 cut(s) 276, 478
BstNSI RCATGY 2 cut(s) 229, 438
BstSCI CCNGG 2 cut(s) 274, 476
BstSFI CTRYAG 2 cut(s) 458, 489
BstV1I GCAGC 3 cut(s) 229, 232, 444
BstV2I GAAGAC 1 cut(s) 137
BsuRI GGCC 1 cut(s) 338
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 553
BtsIMutI CAGTG 1 cut(s) 508
BveI ACCTGC 1 cut(s) 451
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 415
CseI GACGC 1 cut(s) 44
Csp6I GTAC 2 cut(s) 21, 217
CviAII CATG 4 cut(s) 107, 226, 334, 435
CviJI RGCY 5 cut(s) 191, 197, 242, 338, 457
CviKI_1 RGCY 5 cut(s) 191, 197, 242, 338, 457
CviQI GTAC 2 cut(s) 21, 217
DdeI CTNAG 4 cut(s) 24, 74, 404, 525
DpnI GATC 3 cut(s) 105, 332, 431
DpnII GATC 3 cut(s) 103, 330, 429
DrdI GACNNNNNNGTC 1 cut(s) 520
DseDI GACNNNNNNGTC 1 cut(s) 520
EaeI YGGCCR 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 274, 476
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
Esp3I CGTCTC 1 cut(s) 273
FaeI CATG 4 cut(s) 110, 229, 337, 438
FalI AAGNNNNNCTT 3 cut(s) 129, 161, 543
FaqI GGGAC 1 cut(s) 47
FatI CATG 4 cut(s) 106, 225, 333, 434
FbaI TGATCA 2 cut(s) 330, 429
Fnu4HI GCNGC 3 cut(s) 243, 246, 458
FokI GGATG 1 cut(s) 560
Fsp4HI GCNGC 3 cut(s) 243, 246, 458
FspBI CTAG 1 cut(s) 347
GlaI GCGC 1 cut(s) 414
GluI GCNGC 3 cut(s) 243, 246, 458
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 1 cut(s) 338
HgaI GACGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 415
Hin1II CATG 4 cut(s) 110, 229, 337, 438
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 2 cut(s) 50, 166
HphI GGTGA 2 cut(s) 388, 506
Hpy166II GTNNAC 4 cut(s) 61, 352, 506, 556
Hpy188I TCNGA 2 cut(s) 55, 470
Hpy188III TCNNGA 3 cut(s) 107, 149, 427
Hpy8I GTNNAC 4 cut(s) 61, 352, 506, 556
HpyAV CCTTC 2 cut(s) 175, 367
HpyCH4V TGCA 3 cut(s) 4, 95, 460
HpyF3I CTNAG 4 cut(s) 24, 74, 404, 525
Hsp92II CATG 4 cut(s) 110, 229, 337, 438
HspAI GCGC 1 cut(s) 413
Ksp22I TGATCA 2 cut(s) 330, 429
Kzo9I GATC 3 cut(s) 103, 330, 429
LmnI GCTCC 2 cut(s) 301, 529
LpnPI CCDG 8 cut(s) 162, 261, 284, 288, 446, 463, 477, 490
Lsp1109I GCAGC 3 cut(s) 229, 232, 444
LweI GCATC 2 cut(s) 142, 303
MaeI CTAG 1 cut(s) 347
MalI GATC 3 cut(s) 105, 332, 431
MboI GATC 3 cut(s) 103, 330, 429
MboII GAAGA 5 cut(s) 124, 137, 397, 548, 551
MluCI AATT 2 cut(s) 96, 542
MnlI CCTC 2 cut(s) 49, 232
MspR9I CCNGG 2 cut(s) 276, 478
MvaI CCWGG 2 cut(s) 276, 478
NdeII GATC 3 cut(s) 103, 330, 429
NlaIII CATG 4 cut(s) 110, 229, 337, 438
NspI RCATGY 2 cut(s) 229, 438
PagI TCATGA 1 cut(s) 106
PciI ACATGT 1 cut(s) 434
PfeI GAWTC 2 cut(s) 50, 166
PkrI GCNGC 3 cut(s) 244, 247, 459
PscI ACATGT 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 274, 476
PspGI CCWGG 2 cut(s) 274, 476
PstI CTGCAG 1 cut(s) 462
RsaI GTAC 2 cut(s) 22, 218
RsaNI GTAC 2 cut(s) 21, 217
SatI GCNGC 3 cut(s) 243, 246, 458
Sau3AI GATC 3 cut(s) 103, 330, 429
ScrFI CCNGG 2 cut(s) 276, 478
SetI ASST 7 cut(s) 60, 262, 277, 378, 465, 496, 561
SfaNI GCATC 2 cut(s) 142, 303
SfcI CTRYAG 2 cut(s) 458, 489
Sse9I AATT 2 cut(s) 96, 542
SsiI CCGC 1 cut(s) 362
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 2 cut(s) 274, 476
StyI CCWWGG 1 cut(s) 170
TaqI TCGA 1 cut(s) 311
TasI AATT 2 cut(s) 96, 542
TatI WGTACW 2 cut(s) 20, 216
TfiI GAWTC 2 cut(s) 50, 166
TscAI CASTG 1 cut(s) 508
TseI GCWGC 3 cut(s) 242, 245, 457
TspDTI ATGAA 1 cut(s) 564
TspRI CASTG 1 cut(s) 508
XceI RCATGY 2 cut(s) 229, 438
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.