RchiOBHm_Chr4g0400811

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000789
Physical Location & Seq
Forward (+)
18617468 .. 18626225
8758 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37280

Sequence Viewer

Length: 999 bp
ATGAGTAGCGAAAAGGTTCCCAATCCCATTGCTACTACTGCTGCGAACACCAAGACCACTCCTCCTCCTCACGGCGTCGAGTTCGTTAAGGGCGTTAATGGCCTCGACAAGGTCGTCCTCCGTGATCCGCGCGGCAGTCTCGCCGAGGTGTATTTGTATGGGGGTCATGTAACATCATGGAAGAATGACCAGGGGGAGGAATTGCTATTTGTCAGCAATAAGGCTATATTTAAGCCTCCAAAAGCAATTCGTGGGGGGATCCCAATTTGCTTTCCACAATTTTCAAATCTTGGTTCTCTTGATGCACATGGATTTGCTAGAAACAGATTTTGGAGCATTGACCCTGATCCATCTCCTTTTCCAACAAATACTTCCAATAAGGTTTTTGTTGATTTGATTCTTAAGCCTACTGAAGAAGATATTAAGACTTGGCCTCATAGTTATGAGTTCCGGCTGCGAGTAGCTTTGGGACCTGGAGGAGATCTGATGTTGACATCTCGCATCCGGAATACCAACTCTGATGGGAAGCCATTCACATTCACGTTTGCTTATCATACTTATTTCTCTGTTTCAGATATAAGTGAAGTTCGTGTAGAAGGCTTGGAGACCCTCGATTATCTGGACAACATGCAGAACAGGAAACGTTGTACTGAGCAAGGGGATGCTATAACGTTTGAATCGGAGGTCGACAAGATATATCTTAGCACTCCTACAAAGATTGCAATTCTGGATCATGAGAAGAAGAGAACATTTGTAATACGTAAAGATGGGCTTCCAGATGCTGTGGTGTGGAATCCCTGGGATAAGAAGGCAAAGGCTATGGCTGATTTTGGAGATGATGAGTACAAACATATGCTCTGTGTGGAGGCTGCTGCTATTGAGAGACCTATCACATTGAAACCCGGAGAGGAGTGGAGAGGAAGGCAGGAGCTTTCAGCTGTTCCTTCCAGTTACTGTAGTGGGCAACTTGATCCTCGAAAGGTTCTCCAGGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

332

Amino Acids

37.2

Weight (kDa)

6.41

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 36 - 311 3.2e-71 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 113
AccI GTMKAC 1 cut(s) 687
AccII CGCG 2 cut(s) 130, 132
AccIII TCCGGA 1 cut(s) 504
AciI CCGC 2 cut(s) 128, 132
AclI AACGTT 2 cut(s) 643, 671
AclWI GGATC 6 cut(s) 119, 253, 266, 341, 738, 965
AcuI CTGAAG 1 cut(s) 432
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 2 cut(s) 649, 845
AfiI CCNNNNNNNGG 3 cut(s) 71, 109, 196
AflII CTTAAG 1 cut(s) 401
AgsI TTSAA 3 cut(s) 285, 677, 898
AjnI CCWGG 4 cut(s) 189, 472, 797, 987
AjuI GAANNNNNNNTTGG 4 cut(s) 313, 345, 355, 387
AluBI AGCT 3 cut(s) 464, 931, 938
AluI AGCT 3 cut(s) 464, 931, 938
Alw26I GTCTC 3 cut(s) 143, 599, 877
AlwI GGATC 6 cut(s) 119, 253, 266, 341, 738, 965
AlwNI CAGNNNCTG 2 cut(s) 782, 954
Aor13HI TCCGGA 1 cut(s) 504
AoxI GGCC 2 cut(s) 100, 431
ApeKI GCWGC 4 cut(s) 41, 454, 869, 872
Asp700I GAANNNNTTC 2 cut(s) 15, 530
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 470
AsuC2I CCSGG 1 cut(s) 903
AvaII GGWCC 1 cut(s) 470
BamHI GGATCC 1 cut(s) 258
BbvI GCAGC 4 cut(s) 28, 441, 856, 859
BccI CCATC 3 cut(s) 358, 515, 761
BceAI ACGGC 1 cut(s) 88
BciT130I CCWGG 4 cut(s) 191, 474, 799, 989
BcnI CCSGG 1 cut(s) 903
BcoDI GTCTC 3 cut(s) 143, 599, 877
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 955
BfrI CTTAAG 1 cut(s) 401
BglII AGATCT 1 cut(s) 481
BisI GCNGC 5 cut(s) 42, 133, 455, 870, 873
BlsI GCNGC 5 cut(s) 43, 134, 456, 871, 874
Bme1390I CCNGG 5 cut(s) 191, 474, 799, 903, 989
Bme18I GGWCC 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 3 cut(s) 18, 260, 471
BmrFI CCNGG 5 cut(s) 191, 474, 799, 903, 989
BmsI GCATC 4 cut(s) 292, 510, 652, 769
BpmI CTGGAG 2 cut(s) 495, 971
BpuMI CCSGG 1 cut(s) 903
BsaAI YACGTR 1 cut(s) 761
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 2 cut(s) 599, 877
BsaJI CCNNGG 5 cut(s) 144, 190, 797, 798, 988
BsaWI WCCGGW 1 cut(s) 504
BsaXI ACNNNNNCTCC 4 cut(s) 46, 49, 76, 79
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 109, 196
Bse1I ACTGG 1 cut(s) 948
Bse3DI GCAATG 1 cut(s) 27
BseAI TCCGGA 1 cut(s) 504
BseBI CCWGG 4 cut(s) 191, 474, 799, 989
BseDI CCNNGG 5 cut(s) 144, 190, 797, 798, 988
BseGI GGATG 2 cut(s) 501, 667
BseLI CCNNNNNNNGG 3 cut(s) 71, 109, 196
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 642
BseNI ACTGG 1 cut(s) 948
BseRI GAGGAG 5 cut(s) 51, 54, 57, 492, 923
BseXI GCAGC 4 cut(s) 28, 441, 856, 859
Bsh1236I CGCG 2 cut(s) 130, 132
BshFI GGCC 2 cut(s) 102, 433
BsiSI CCGG 3 cut(s) 451, 505, 903
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 3 cut(s) 71, 109, 196
BsmAI GTCTC 3 cut(s) 143, 599, 877
BsmFI GGGAC 1 cut(s) 483
BsnI GGCC 2 cut(s) 102, 433
Bso31I GGTCTC 2 cut(s) 599, 877
Bsp13I TCCGGA 1 cut(s) 504
Bsp143I GATC 6 cut(s) 124, 258, 346, 481, 730, 970
BspACI CCGC 2 cut(s) 128, 132
BspANI GGCC 2 cut(s) 102, 433
BspCNI CTCAG 1 cut(s) 643
BspEI TCCGGA 1 cut(s) 504
BspFNI CGCG 2 cut(s) 130, 132
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 3 cut(s) 18, 260, 471
BspPI GGATC 6 cut(s) 119, 253, 266, 341, 738, 965
BspTI CTTAAG 1 cut(s) 401
BspTNI GGTCTC 2 cut(s) 599, 877
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 1 cut(s) 948
BssECI CCNNGG 5 cut(s) 144, 190, 797, 798, 988
BssMI GATC 6 cut(s) 124, 258, 346, 481, 730, 970
BssNI GRCGYC 1 cut(s) 75
Bst2UI CCWGG 4 cut(s) 191, 474, 799, 989
Bst4CI ACNGT 1 cut(s) 956
Bst6I CTCTTC 1 cut(s) 737
BstACI GRCGYC 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 761
BstDEI CTNAG 2 cut(s) 651, 701
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 501, 667
BstFNI CGCG 2 cut(s) 130, 132
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 6 cut(s) 127, 261, 349, 484, 733, 973
BstMAI GTCTC 3 cut(s) 143, 599, 877
BstMBI GATC 6 cut(s) 124, 258, 346, 481, 730, 970
BstMWI GCNNNNNNNGC 2 cut(s) 38, 99
BstNI CCWGG 4 cut(s) 191, 474, 799, 989
BstNSI RCATGY 1 cut(s) 631
BstSCI CCNGG 5 cut(s) 189, 472, 797, 901, 987
BstSFI CTRYAG 1 cut(s) 955
BstSNI TACGTA 1 cut(s) 761
BstUI CGCG 2 cut(s) 130, 132
BstV1I GCAGC 4 cut(s) 28, 441, 856, 859
BstX2I RGATCY 2 cut(s) 258, 481
BstYI RGATCY 2 cut(s) 258, 481
BsuRI GGCC 2 cut(s) 102, 433
BtsCI GGATG 2 cut(s) 501, 667
CaiI CAGNNNCTG 2 cut(s) 782, 954
CciI TCATGA 1 cut(s) 733
CfoI GCGC 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 470
CseI GACGC 1 cut(s) 64
Csp6I GTAC 2 cut(s) 648, 844
CviAII CATG 5 cut(s) 167, 177, 308, 628, 734
CviQI GTAC 2 cut(s) 648, 844
DdeI CTNAG 2 cut(s) 651, 701
DpnI GATC 6 cut(s) 126, 260, 348, 483, 732, 972
DpnII GATC 6 cut(s) 124, 258, 346, 481, 730, 970
DrdI GACNNNNNNGTC 1 cut(s) 113
DseDI GACNNNNNNGTC 1 cut(s) 113
Eam1104I CTCTTC 1 cut(s) 737
EarI CTCTTC 1 cut(s) 737
Eco105I TACGTA 1 cut(s) 761
Eco31I GGTCTC 2 cut(s) 599, 877
Eco47I GGWCC 1 cut(s) 470
Eco57I CTGAAG 1 cut(s) 432
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 470
EcoRII CCWGG 4 cut(s) 189, 472, 797, 987
FaeI CATG 5 cut(s) 170, 180, 311, 631, 737
FalI AAGNNNNNCTT 2 cut(s) 756, 788
FaqI GGGAC 1 cut(s) 483
FatI CATG 5 cut(s) 166, 176, 307, 627, 733
FauNDI CATATG 1 cut(s) 852
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 5 cut(s) 42, 133, 455, 870, 873
FokI GGATG 2 cut(s) 488, 674
Fsp4HI GCNGC 5 cut(s) 42, 133, 455, 870, 873
FspBI CTAG 1 cut(s) 318
GlaI GCGC 1 cut(s) 131
GluI GCNGC 5 cut(s) 42, 133, 455, 870, 873
GsuI CTGGAG 2 cut(s) 495, 971
HaeIII GGCC 2 cut(s) 102, 433
HapII CCGG 3 cut(s) 451, 505, 903
HgaI GACGC 1 cut(s) 64
HhaI GCGC 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 5 cut(s) 170, 180, 311, 631, 737
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HincII GTYRAC 2 cut(s) 492, 688
HindII GTYRAC 2 cut(s) 492, 688
HinfI GANTC 3 cut(s) 397, 677, 793
HpaII CCGG 3 cut(s) 451, 505, 903
Hpy166II GTNNAC 2 cut(s) 492, 688
Hpy188I TCNGA 4 cut(s) 486, 520, 574, 682
Hpy188III TCNNGA 6 cut(s) 299, 505, 620, 728, 734, 776
Hpy8I GTNNAC 2 cut(s) 492, 688
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 4 cut(s) 590, 802, 915, 954
HpyCH4III ACNGT 1 cut(s) 956
HpyCH4IV ACGT 4 cut(s) 542, 643, 671, 760
HpyCH4V TGCA 3 cut(s) 305, 631, 722
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 99
HpyF3I CTNAG 2 cut(s) 651, 701
HpySE526I ACGT 4 cut(s) 542, 643, 671, 760
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 5 cut(s) 170, 180, 311, 631, 737
HspAI GCGC 1 cut(s) 130
Kpn2I TCCGGA 1 cut(s) 504
Kzo9I GATC 6 cut(s) 124, 258, 346, 481, 730, 970
LmnI GCTCC 2 cut(s) 333, 928
Lsp1109I GCAGC 4 cut(s) 28, 441, 856, 859
LweI GCATC 4 cut(s) 292, 510, 652, 769
MaeI CTAG 1 cut(s) 318
MaeII ACGT 4 cut(s) 542, 643, 671, 760
MaeIII GTNAC 2 cut(s) 169, 950
MalI GATC 6 cut(s) 126, 260, 348, 483, 732, 972
MboI GATC 6 cut(s) 124, 258, 346, 481, 730, 970
MboII GAAGA 5 cut(s) 193, 425, 428, 751, 754
MflI RGATCY 2 cut(s) 258, 481
MluCI AATT 5 cut(s) 200, 246, 264, 278, 723
MmeI TCCRAC 1 cut(s) 386
MroI TCCGGA 1 cut(s) 504
MroXI GAANNNNTTC 2 cut(s) 15, 530
MseI TTAA 5 cut(s) 87, 96, 231, 402, 423
MslI CAYNNNNRTG 1 cut(s) 441
MspA1I CMGCKG 1 cut(s) 938
MspCI CTTAAG 1 cut(s) 401
MspI CCGG 3 cut(s) 451, 505, 903
MspR9I CCNGG 5 cut(s) 191, 474, 799, 903, 989
MvaI CCWGG 4 cut(s) 191, 474, 799, 989
MvnI CGCG 2 cut(s) 130, 132
MwoI GCNNNNNNNGC 2 cut(s) 38, 99
NciI CCSGG 1 cut(s) 903
NdeI CATATG 1 cut(s) 852
NdeII GATC 6 cut(s) 124, 258, 346, 481, 730, 970
NlaIII CATG 5 cut(s) 170, 180, 311, 631, 737
NlaIV GGNNCC 3 cut(s) 18, 260, 471
NmeAIII GCCGAG 1 cut(s) 169
NspI RCATGY 1 cut(s) 631
PagI TCATGA 1 cut(s) 733
PasI CCCWGGG 1 cut(s) 798
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 111
PdmI GAANNNNTTC 2 cut(s) 15, 530
PfeI GAWTC 3 cut(s) 397, 677, 793
PflFI GACNNNGTC 1 cut(s) 110
PkrI GCNGC 5 cut(s) 43, 134, 456, 871, 874
Ppu21I YACGTR 1 cut(s) 761
PpuMI RGGWCCY 1 cut(s) 470
Psp1406I AACGTT 2 cut(s) 643, 671
Psp5II RGGWCCY 1 cut(s) 470
Psp6I CCWGG 4 cut(s) 189, 472, 797, 987
PspGI CCWGG 4 cut(s) 189, 472, 797, 987
PspN4I GGNNCC 3 cut(s) 18, 260, 471
PspPI GGNCC 1 cut(s) 470
PspPPI RGGWCCY 1 cut(s) 470
PstNI CAGNNNCTG 2 cut(s) 782, 954
PsuI RGATCY 2 cut(s) 258, 481
PsyI GACNNNGTC 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 938
RsaI GTAC 2 cut(s) 649, 845
RsaNI GTAC 2 cut(s) 648, 844
RseI CAYNNNNRTG 1 cut(s) 441
SalI GTCGAC 1 cut(s) 686
SaqAI TTAA 5 cut(s) 87, 96, 231, 402, 423
SatI GCNGC 5 cut(s) 42, 133, 455, 870, 873
Sau3AI GATC 6 cut(s) 124, 258, 346, 481, 730, 970
Sau96I GGNCC 1 cut(s) 470
ScrFI CCNGG 5 cut(s) 191, 474, 799, 903, 989
SfaNI GCATC 4 cut(s) 292, 510, 652, 769
SfcI CTRYAG 1 cut(s) 955
SinI GGWCC 1 cut(s) 470
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SnaBI TACGTA 1 cut(s) 761
Sse9I AATT 5 cut(s) 200, 246, 264, 278, 723
SsiI CCGC 2 cut(s) 128, 132
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 5 cut(s) 189, 472, 797, 901, 987
TaaI ACNGT 1 cut(s) 956
TaiI ACGT 4 cut(s) 545, 646, 674, 763
TaqI TCGA 5 cut(s) 78, 105, 612, 687, 976
TasI AATT 5 cut(s) 200, 246, 264, 278, 723
TatI WGTACW 2 cut(s) 647, 843
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 3 cut(s) 397, 677, 793
Tru1I TTAA 5 cut(s) 87, 96, 231, 402, 423
Tru9I TTAA 5 cut(s) 87, 96, 231, 402, 423
TseI GCWGC 4 cut(s) 41, 454, 869, 872
TspGWI ACGGA 1 cut(s) 110
Tth111I GACNNNGTC 1 cut(s) 110
Vha464I CTTAAG 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 470
XagI CCTNNNNNAGG 1 cut(s) 107
XceI RCATGY 1 cut(s) 631
XmiI GTMKAC 1 cut(s) 687
XmnI GAANNNNTTC 2 cut(s) 15, 530
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.