Rh6AG174700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
28314091 .. 28339239
25149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG174700.1

Sequence Viewer

Length: 630 bp
ATGGTAGTCTCGGACTCTGACTCAAATCTTCTCCTCTGCTCTTATTGCCTTCTTGACCGCTCCTATTGTTGCTCGGCTACTGTGACTATACATGTAACTTGGCTTTTCATATTTCTGGTTCAAGGGTTAGCTGGAGACGAAGAAGAAGGCTCGACAAATAAACAATTGGCTTTTCATATTTCTTGGTTTGTTGTAATTATGAATATTATTGGCTTGATTTGGGGTCCTATTACGACGGAATGGATTCAAGTGAAGAATGTGGTGTGCTTGCTAAGACCATGTTTTACATTCCAGCTAAAAACCGAGCTAAAGATTGTTCTTGGAGTGGATTTGGAAAAGGTTGCAGAAATAGCAACAACATCATCTGCTTTGAAAGAGGAAAGGCTCAAGCTGCGTTTCAAAATAGCACACTTCCCAGCTTTGTGCTCAATACAACAGCAGAGGAATATCAATTGCCCAGAACTAGACATAATTAAAGCCAGAAGTGTTCTCTGCATGACTGCATGCAAGAAGATAAAGAATATTGAGAATCATGGGCAGCGAAAAAGTCCGGTGTCCTATTGGTTACTTATCAGCAATGCCTCTGGACTTTGCCTTCTTCCCAAGAGTTCCAATGAGTATCTATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.54

Weight (kDa)

8.27

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 60
AciI CCGC 1 cut(s) 58
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 4 cut(s) 122, 248, 373, 400
AluBI AGCT 5 cut(s) 131, 295, 307, 391, 419
AluI AGCT 5 cut(s) 131, 295, 307, 391, 419
Alw21I GWGCWC 1 cut(s) 428
Alw26I GTCTC 2 cut(s) 13, 129
ApeKI GCWGC 2 cut(s) 391, 538
Asp700I GAANNNNTTC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 224
AvaII GGWCC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 428
BbvI GCAGC 2 cut(s) 378, 550
BcoDI GTCTC 2 cut(s) 13, 129
BfaI CTAG 1 cut(s) 464
BisI GCNGC 2 cut(s) 392, 539
BlsI GCNGC 2 cut(s) 393, 540
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 371
BsaWI WCCGGW 1 cut(s) 550
Bse3DI GCAATG 1 cut(s) 583
BseMI GCAATG 1 cut(s) 583
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 2 cut(s) 378, 550
BseYI CCCAGC 1 cut(s) 415
BsiHKAI GWGCWC 1 cut(s) 428
BsiSI CCGG 1 cut(s) 551
BsmAI GTCTC 2 cut(s) 13, 129
BsmBI CGTCTC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 428
BspACI CCGC 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 225
BsrBI CCGCTC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 583
Bst4CI ACNGT 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 269, 505
BstDEI CTNAG 1 cut(s) 272
BstMAI GTCTC 2 cut(s) 13, 129
BstMWI GCNNNNNNNGC 3 cut(s) 45, 350, 391
BstNSI RCATGY 2 cut(s) 95, 507
BstV1I GCAGC 2 cut(s) 378, 550
Cac8I GCNNGC 2 cut(s) 269, 505
Cfr13I GGNCC 1 cut(s) 224
CviAII CATG 5 cut(s) 92, 279, 496, 504, 533
DdeI CTNAG 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 224
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 5 cut(s) 95, 282, 499, 507, 536
FatI CATG 5 cut(s) 91, 278, 495, 503, 532
Fnu4HI GCNGC 2 cut(s) 392, 539
Fsp4HI GCNGC 2 cut(s) 392, 539
FspBI CTAG 1 cut(s) 464
GluI GCNGC 2 cut(s) 392, 539
GsaI CCCAGC 1 cut(s) 419
GsuI CTGGAG 1 cut(s) 153
HapII CCGG 1 cut(s) 551
Hin1II CATG 5 cut(s) 95, 282, 499, 507, 536
HinfI GANTC 4 cut(s) 14, 20, 244, 529
HpaII CCGG 1 cut(s) 551
Hpy188I TCNGA 2 cut(s) 13, 19
Hpy188III TCNNGA 2 cut(s) 53, 585
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 3 cut(s) 59, 140, 605
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 4 cut(s) 344, 495, 503, 507
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 350, 391
HpyF3I CTNAG 1 cut(s) 272
Hsp92II CATG 5 cut(s) 95, 282, 499, 507, 536
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 8 cut(s) 101, 117, 305, 429, 471, 493, 564, 570
Lsp1109I GCAGC 2 cut(s) 378, 550
MaeI CTAG 1 cut(s) 464
MaeIII GTNAC 3 cut(s) 82, 94, 564
MbiI CCGCTC 1 cut(s) 60
MboII GAAGA 6 cut(s) 20, 152, 155, 265, 523, 590
MfeI CAATTG 2 cut(s) 164, 451
MhlI GDGCHC 1 cut(s) 428
MluCI AATT 4 cut(s) 164, 195, 451, 471
MlyI GAGTC 2 cut(s) 8, 14
MnlI CCTC 4 cut(s) 44, 370, 435, 592
MroXI GAANNNNTTC 1 cut(s) 243
MseI TTAA 1 cut(s) 474
MspI CCGG 1 cut(s) 551
MunI CAATTG 2 cut(s) 164, 451
MwoI GCNNNNNNNGC 3 cut(s) 45, 350, 391
NlaIII CATG 5 cut(s) 95, 282, 499, 507, 536
NlaIV GGNNCC 1 cut(s) 225
NmeAIII GCCGAG 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 2 cut(s) 95, 507
PaeI GCATGC 1 cut(s) 507
PciI ACATGT 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 2 cut(s) 244, 529
PkrI GCNGC 2 cut(s) 393, 540
PleI GAGTC 2 cut(s) 8, 14
PpsI GAGTC 2 cut(s) 8, 14
PpuMI RGGWCCY 1 cut(s) 224
PscI ACATGT 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 224
PspPPI RGGWCCY 1 cut(s) 224
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 2 cut(s) 392, 539
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 2 cut(s) 8, 14
SduI GDGCHC 1 cut(s) 428
SetI ASST 6 cut(s) 133, 297, 309, 342, 393, 421
SinI GGWCC 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
SphI GCATGC 1 cut(s) 507
Sse9I AATT 4 cut(s) 164, 195, 451, 471
SsiI CCGC 1 cut(s) 58
SspI AATATT 2 cut(s) 205, 523
SspMI CTAG 1 cut(s) 464
TaaI ACNGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 152
TasI AATT 4 cut(s) 164, 195, 451, 471
TfiI GAWTC 2 cut(s) 244, 529
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 2 cut(s) 391, 538
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 3 cut(s) 97, 164, 215
TspGWI ACGGA 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 224
XceI RCATGY 2 cut(s) 95, 507
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.