Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000789

Physical Location & Seq

Genomic Coordinates Reverse (-)

52595764 .. 52597053

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGTGAGTCAATCACATGGTGACCGTCCAAGACTTAAGAGGTGGAGATCCAAGGTTGAAGACTTGGAGTACCAAAATGGTGATGCGCAAGTGAGGAAGAAGCTTTATGTGCCGCTAGTGGAGGACAAGAATAATCACATGAGAGTGCTCAACATCTCTTGTGTTGATGATCTGGTTGTGAATTTGATGGATATTTTAAAACCGGCTGCGGTGAATGCCAATGGAAATGAATGCAAAGAAGGTAGTGTTTCACTTACTTCTTACAAGCCTTATCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016882 GO:0018130 GO:0019438 GO:0019752 GO:0030272 GO:0034641 GO:0035999 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0046653 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

5-FTHF_cyc-lig

Protein Analysis

92

Amino Acids

10.54

Weight (kDa)

8.97

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57330
fragaria_vesca	FvH4_4g07740 FvH4_4g07740 FvH4_4g07740 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010
malus_domestica	MD05G1327600.v1.1 MD09G1230300.v1.1 MD13G1246400.v1.1 MD16G1253800.v1.1 MD17G1229200.v1.1
prunus_persica	Prupe.1G081500_v2.0.a1 Prupe.1G081500_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G292800_v2.0.a1
pyrus_communis	pycom09g14950 pycom13g21740 pycom13g21750 pycom14g13110 pycom16g21500 pycom17g23160
rosa_chinensis	RchiOBHm_Chr3g0475991 RchiOBHm_Chr4g0400811 RchiOBHm_Chr5g0018411
rosa_laevigata	RLG00000009179 RLG00000021107 RLG00000032141 RLG00000032366 RLG00000034317
rosa_multiflora	Rmu_sc0002141.1_g000020 Rmu_sc0004591.1_g000012 Rmu_sc0040059.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033540 Rroxscaffold_1G00059320 Rroxscaffold_2G00112700 Rroxscaffold_4G00322360 Rroxscaffold_5G00345630 Rroxscaffold_5G00348000
rosa_rugosa	Rorug01G0058800 Rorug02G0299000 Rorug02G0299100 Rorug04G0026000 Rorug05G0043600 Rorug06G0305200
rosa_samantha	Rh1AG113800 Rh1AG183300 Rh3BG233300 Rh4AG103900 Rh4BG098800 Rh4CG112100 Rh4DG095700 Rh6AG047200 Rh6AG174700 Rh6BG293500 Rh6BG425100
rosa_wichuraiana	Rw4G008400 Rw4G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	87
AciI	CCGC	2 cut(s)	113, 209
AclWI	GGATC	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	181
AdeI	CACNNNGTG	1 cut(s)	20
AfaI	GTAC	1 cut(s)	71
AflII	CTTAAG	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	59
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw21I	GWGCWC	1 cut(s)	150
AlwI	GGATC	1 cut(s)	42
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	88
AsuHPI	GGTGA	4 cut(s)	16, 32, 92, 223
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	1 cut(s)	181
BfaI	CTAG	1 cut(s)	116
BfrI	CTTAAG	1 cut(s)	35
BisI	GCNGC	2 cut(s)	113, 207
BlsI	GCNGC	2 cut(s)	114, 208
BmsI	GCATC	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	51
Bse118I	RCCGGY	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	203
BsmI	GAATGC	2 cut(s)	220, 236
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	47, 169
BspACI	CCGC	2 cut(s)	113, 209
BspPI	GGATC	1 cut(s)	42
BspTI	CTTAAG	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	47, 169
BssT1I	CCWWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	26
BstAFI	CTTAAG	1 cut(s)	35
BstEII	GGTNACC	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	2 cut(s)	50, 172
BstMBI	GATC	2 cut(s)	47, 169
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 215
BstPI	GGTNACC	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
CfoI	GCGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	2 cut(s)	17, 139
CviJI	RGCY	3 cut(s)	103, 206, 268
CviKI_1	RGCY	3 cut(s)	103, 206, 268
CviQI	GTAC	1 cut(s)	70
DpnI	GATC	2 cut(s)	49, 171
DpnII	GATC	2 cut(s)	47, 169
DraI	TTTAAA	1 cut(s)	198
DraIII	CACNNNGTG	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	51
Eco91I	GGTNACC	1 cut(s)	20
EcoO65I	GGTNACC	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	20, 142
FaiI	YATR	3 cut(s)	18, 108, 140
FatI	CATG	2 cut(s)	16, 138
Fnu4HI	GCNGC	2 cut(s)	113, 207
Fsp4HI	GCNGC	2 cut(s)	113, 207
FspBI	CTAG	1 cut(s)	116
FspI	TGCGCA	1 cut(s)	87
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	2 cut(s)	113, 207
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	2 cut(s)	20, 142
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	4 cut(s)	16, 32, 92, 223
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 215
Hsp92II	CATG	2 cut(s)	20, 142
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	2 cut(s)	47, 169
LpnPI	CCDG	2 cut(s)	158, 216
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	49, 171
MboI	GATC	2 cut(s)	47, 169
MboII	GAAGA	2 cut(s)	71, 109
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	3 cut(s)	33, 87, 115
MseI	TTAA	2 cut(s)	36, 197
MslI	CAYNNNNRTG	1 cut(s)	143
MspCI	CTTAAG	1 cut(s)	35
MspI	CCGG	1 cut(s)	203
Mva1269I	GAATGC	2 cut(s)	220, 236
MwoI	GCNNNNNNNGC	2 cut(s)	109, 215
NdeII	GATC	2 cut(s)	47, 169
NlaIII	CATG	2 cut(s)	20, 142
NmuCI	GTSAC	1 cut(s)	20
NsbI	TGCGCA	1 cut(s)	87
PctI	GAATGC	2 cut(s)	220, 236
PkrI	GCNGC	2 cut(s)	114, 208
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PspEI	GGTNACC	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	143
SaqAI	TTAA	2 cut(s)	36, 197
SatI	GCNGC	2 cut(s)	113, 207
Sau3AI	GATC	2 cut(s)	47, 169
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	4 cut(s)	44, 57, 105, 244
SfaNI	GCATC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	1 cut(s)	181
SsiI	CCGC	2 cut(s)	113, 209
SspMI	CTAG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	26
TasI	AATT	1 cut(s)	181
TauI	GCSGC	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	36, 197
Tru9I	TTAA	2 cut(s)	36, 197
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	243
Vha464I	CTTAAG	1 cut(s)	35
XapI	RAATTY	1 cut(s)	181
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.