Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000789

Physical Location & Seq

Genomic Coordinates Reverse (-)

45660758 .. 45663335

Gene Structure 2578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0305200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGTAGATGGGAATGGGGTGCACAAGAAAGATGGGAATGGGAATAGGAATGGGGGAAGAAAAGCAGGAATCTTTATTTGTGAGGTGAGAAAGAGAAAGAGAAAGAAGGGGAGATTCGGATTTACTGAGTGTGCCTACAGCTCTTGTTTTACAGGTCCGACGGTGCGTAGGACTAACGCTCCTTTTTACCCTATTTGTATTCAAACCCGGACGTTGACTCGGGGAAGGATTTCGATGTCGTCAGATTGGACCACAGTGACGTCGGCATCTGCGTTATCTGTTCGCCACGTCCCCTCTTCCTACGACACGTCGTTTCCCTCTTTTATGAATAGAGAGTTCTGTCAAAGCGATTCGGGTGTGAAAATGGATTCGGAAGCGCAAAATCCATCGCAAGTGCTTGCCACACTCCTCAGTAAGAGAACCAAGCTTCAAGACGAACTCAGAGGAATTGAGAAACAGGTCTATGATCTAGAGACTACGTATCTGCAGGACCCGAGTCAATGCGGCAATGTATTAAAAGGGTTTGAAGGGTTTCTATCTTCATCAAAGAGCACTGCCTTCCTGAAGCGATCTAGGAAATTTCAACCTGAAGACAGGCTCTTCTCATTATCTTCCGTGACATCACCAGCAGCTGAAGAACTTACAGCTGGACGAGATGATGGGAGATCAGACTTTGGTCCCGGCCGTTCTAAAGGGGGTATATACGCGAATGGGCAAGGAAAACCGAAGAAAGGAAGACCTACTCCAAGAGATGCGAAGAGAATCAGGCAGTCGAGTGAACAAGATTATGACTATGAAGATGATCCTGATATGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016882 GO:0018130 GO:0019438 GO:0019752 GO:0030272 GO:0034641 GO:0035999 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0046653 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

5-FTHF_cyc-lig

Protein Analysis

272

Amino Acids

30.27

Weight (kDa)

9.54

Isoelectric Point (pI)

58.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NuA4	PF09340	133 - 209	3.3e-26	Histone acetyltransferase subunit NuA4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57330
fragaria_vesca	FvH4_4g07740 FvH4_4g07740 FvH4_4g07740 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010
malus_domestica	MD05G1327600.v1.1 MD09G1230300.v1.1 MD13G1246400.v1.1 MD16G1253800.v1.1 MD17G1229200.v1.1
prunus_persica	Prupe.1G081500_v2.0.a1 Prupe.1G081500_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G292800_v2.0.a1
pyrus_communis	pycom09g14950 pycom13g21740 pycom13g21750 pycom14g13110 pycom16g21500 pycom17g23160
rosa_chinensis	RchiOBHm_Chr3g0475991 RchiOBHm_Chr4g0400811 RchiOBHm_Chr5g0018411
rosa_laevigata	RLG00000009179 RLG00000021107 RLG00000032141 RLG00000032366 RLG00000034317
rosa_multiflora	Rmu_sc0002141.1_g000020 Rmu_sc0004591.1_g000012 Rmu_sc0040059.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033540 Rroxscaffold_1G00059320 Rroxscaffold_2G00112700 Rroxscaffold_4G00322360 Rroxscaffold_5G00345630 Rroxscaffold_5G00348000
rosa_rugosa	Rorug01G0058800 Rorug02G0299000 Rorug02G0299100 Rorug04G0026000 Rorug05G0043600 Rorug06G0305200
rosa_samantha	Rh1AG113800 Rh1AG183300 Rh3BG233300 Rh4AG103900 Rh4BG098800 Rh4CG112100 Rh4DG095700 Rh6AG047200 Rh6AG174700 Rh6BG293500 Rh6BG425100
rosa_wichuraiana	Rw4G008400 Rw4G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	263
AccII	CGCG	1 cut(s)	707
AciI	CCGC	1 cut(s)	504
AclWI	GGATC	1 cut(s)	797
AcoI	YGGCCR	1 cut(s)	682
AcsI	RAATTY	1 cut(s)	578
AcuI	CTGAAG	3 cut(s)	584, 609, 654
AcyI	GRCGYC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	731
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	4 cut(s)	203, 431, 527, 584
AjiI	CACGTC	2 cut(s)	289, 309
AluBI	AGCT	4 cut(s)	141, 427, 632, 647
AluI	AGCT	4 cut(s)	141, 427, 632, 647
Alw21I	GWGCWC	2 cut(s)	24, 554
Alw26I	GTCTC	1 cut(s)	467
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	797
AlwNI	CAGNNNCTG	1 cut(s)	632
Ama87I	CYCGRG	2 cut(s)	219, 493
AoxI	GGCC	1 cut(s)	682
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	629
ApoI	RAATTY	1 cut(s)	578
Asp700I	GAANNNNTTC	2 cut(s)	229, 531
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	4 cut(s)	155, 249, 490, 677
AsuC2I	CCSGG	2 cut(s)	208, 681
AsuHPI	GGTGA	2 cut(s)	97, 615
AvaI	CYCGRG	2 cut(s)	219, 493
AvaII	GGWCC	4 cut(s)	155, 249, 490, 677
BaeGI	GKGCMC	1 cut(s)	24
BbsI	GAAGAC	2 cut(s)	597, 742
Bbv12I	GWGCWC	2 cut(s)	24, 554
BbvI	GCAGC	1 cut(s)	641
BccI	CCATC	4 cut(s)	2, 26, 394, 653
BceAI	ACGGC	1 cut(s)	669
BcnI	CCSGG	2 cut(s)	208, 681
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	2 cut(s)	470, 573
BfmI	CTRYAG	2 cut(s)	136, 485
BisI	GCNGC	2 cut(s)	505, 630
BlsI	GCNGC	2 cut(s)	506, 631
Bme1390I	CCNGG	2 cut(s)	208, 681
Bme18I	GGWCC	4 cut(s)	155, 249, 490, 677
BmeT110I	CYCGRG	2 cut(s)	219, 493
BmgBI	CACGTC	2 cut(s)	289, 309
BmgT120I	GGNCC	4 cut(s)	155, 249, 490, 677
BmiI	GGNNCC	2 cut(s)	492, 679
BmrFI	CCNGG	2 cut(s)	208, 681
BmsI	GCATC	2 cut(s)	275, 742
BoxI	GACNNNNGTC	2 cut(s)	495, 675
BpiI	GAAGAC	2 cut(s)	597, 742
BpuMI	CCSGG	2 cut(s)	208, 681
BsaAI	YACGTR	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	260
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	1 cut(s)	731
Bse3DI	GCAATG	1 cut(s)	514
BseLI	CCNNNNNNNGG	1 cut(s)	731
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	3 cut(s)	117, 424, 454
BseRI	GAGGAG	1 cut(s)	398
BseSI	GKGCMC	1 cut(s)	24
BseX3I	CGGCCG	1 cut(s)	682
BseXI	GCAGC	1 cut(s)	641
Bsh1236I	CGCG	1 cut(s)	707
Bsh1285I	CGRYCG	1 cut(s)	685
BshFI	GGCC	1 cut(s)	684
BsiEI	CGRYCG	1 cut(s)	685
BsiHKAI	GWGCWC	2 cut(s)	24, 554
BsiHKCI	CYCGRG	2 cut(s)	219, 493
BsiSI	CCGG	2 cut(s)	208, 681
BslFI	GGGAC	2 cut(s)	275, 663
BslI	CCNNNNNNNGG	1 cut(s)	731
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	2 cut(s)	275, 663
BsnI	GGCC	1 cut(s)	684
BsoBI	CYCGRG	2 cut(s)	219, 493
Bsp1286I	GDGCHC	2 cut(s)	24, 554
Bsp143I	GATC	4 cut(s)	466, 569, 665, 802
BspACI	CCGC	1 cut(s)	504
BspANI	GGCC	1 cut(s)	684
BspCNI	CTCAG	3 cut(s)	118, 423, 453
BspFNI	CGCG	1 cut(s)	707
BspLI	GGNNCC	2 cut(s)	492, 679
BspMAI	CTGCAG	1 cut(s)	489
BspPI	GGATC	1 cut(s)	797
BspQI	GCTCTTC	1 cut(s)	605
BsrDI	GCAATG	1 cut(s)	514
BssMI	GATC	4 cut(s)	466, 569, 665, 802
BssNI	GRCGYC	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	163, 256
Bst6I	CTCTTC	3 cut(s)	301, 605, 752
BstACI	GRCGYC	1 cut(s)	260
BstBAI	YACGTR	1 cut(s)	480
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	3 cut(s)	126, 410, 440
BstFNI	CGCG	1 cut(s)	707
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	4 cut(s)	469, 572, 668, 805
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	4 cut(s)	466, 569, 665, 802
BstMCI	CGRYCG	1 cut(s)	685
BstPAI	GACNNNNGTC	2 cut(s)	495, 675
BstSCI	CCNGG	2 cut(s)	206, 679
BstSFI	CTRYAG	2 cut(s)	136, 485
BstSLI	GKGCMC	1 cut(s)	24
BstSNI	TACGTA	1 cut(s)	480
BstUI	CGCG	1 cut(s)	707
BstV1I	GCAGC	1 cut(s)	641
BstV2I	GAAGAC	2 cut(s)	597, 742
BstZI	CGGCCG	1 cut(s)	682
BsuRI	GGCC	1 cut(s)	684
BtgZI	GCGATG	1 cut(s)	372
BtrI	CACGTC	2 cut(s)	289, 309
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	2 cut(s)	261, 552
Cac8I	GCNNGC	1 cut(s)	399
CaiI	CAGNNNCTG	1 cut(s)	632
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	4 cut(s)	155, 249, 490, 677
CviJI	RGCY	6 cut(s)	141, 427, 598, 632, 647, 684
CviKI_1	RGCY	6 cut(s)	141, 427, 598, 632, 647, 684
DdeI	CTNAG	3 cut(s)	126, 410, 440
DpnI	GATC	4 cut(s)	468, 571, 667, 804
DpnII	GATC	4 cut(s)	466, 569, 665, 802
EaeI	YGGCCR	1 cut(s)	682
EagI	CGGCCG	1 cut(s)	682
Eam1104I	CTCTTC	3 cut(s)	301, 605, 752
EarI	CTCTTC	3 cut(s)	301, 605, 752
EclXI	CGGCCG	1 cut(s)	682
Eco105I	TACGTA	1 cut(s)	480
Eco47I	GGWCC	4 cut(s)	155, 249, 490, 677
Eco52I	CGGCCG	1 cut(s)	682
Eco57I	CTGAAG	3 cut(s)	584, 609, 654
Eco88I	CYCGRG	2 cut(s)	219, 493
EcoO109I	RGGNCCY	1 cut(s)	490
FaiI	YATR	7 cut(s)	326, 465, 701, 703, 789, 795, 812
FaqI	GGGAC	2 cut(s)	275, 663
Fnu4HI	GCNGC	2 cut(s)	505, 630
Fsp4HI	GCNGC	2 cut(s)	505, 630
FspBI	CTAG	2 cut(s)	470, 573
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	2 cut(s)	505, 630
HaeIII	GGCC	1 cut(s)	684
HapII	CCGG	2 cut(s)	208, 681
HhaI	GCGC	1 cut(s)	379
Hin1I	GRCGYC	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	7 cut(s)	69, 114, 217, 350, 368, 496, 762
HpaII	CCGG	2 cut(s)	208, 681
HphI	GGTGA	2 cut(s)	97, 615
Hpy166II	GTNNAC	3 cut(s)	22, 216, 779
Hpy188I	TCNGA	6 cut(s)	119, 159, 244, 373, 443, 670
Hpy188III	TCNNGA	4 cut(s)	431, 470, 562, 806
Hpy8I	GTNNAC	3 cut(s)	22, 216, 779
Hpy99I	CGWCG	3 cut(s)	163, 265, 313
HpyAV	CCTTC	4 cut(s)	100, 219, 521, 568
HpyCH4III	ACNGT	2 cut(s)	163, 256
HpyCH4IV	ACGT	5 cut(s)	212, 260, 288, 308, 479
HpyCH4V	TGCA	2 cut(s)	22, 487
HpyF3I	CTNAG	3 cut(s)	126, 410, 440
HpySE526I	ACGT	5 cut(s)	212, 260, 288, 308, 479
Hsp92I	GRCGYC	1 cut(s)	260
HspAI	GCGC	1 cut(s)	377
Kzo9I	GATC	4 cut(s)	466, 569, 665, 802
LguI	GCTCTTC	1 cut(s)	605
LmnI	GCTCC	1 cut(s)	184
Lsp1109I	GCAGC	1 cut(s)	641
LweI	GCATC	2 cut(s)	275, 742
MaeI	CTAG	2 cut(s)	470, 573
MaeII	ACGT	5 cut(s)	212, 260, 288, 308, 479
MaeIII	GTNAC	2 cut(s)	256, 616
MalI	GATC	4 cut(s)	468, 571, 667, 804
MboI	GATC	4 cut(s)	466, 569, 665, 802
MhlI	GDGCHC	2 cut(s)	24, 554
MluCI	AATT	2 cut(s)	447, 578
MlyI	GAGTC	2 cut(s)	211, 505
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	5 cut(s)	76, 304, 328, 419, 437
MroXI	GAANNNNTTC	2 cut(s)	229, 531
MseI	TTAA	1 cut(s)	515
MspA1I	CMGCKG	2 cut(s)	632, 647
MspI	CCGG	2 cut(s)	208, 681
MspR9I	CCNGG	2 cut(s)	208, 681
MvnI	CGCG	1 cut(s)	707
NciI	CCSGG	2 cut(s)	208, 681
NdeII	GATC	4 cut(s)	466, 569, 665, 802
NlaIV	GGNNCC	2 cut(s)	492, 679
NmuCI	GTSAC	2 cut(s)	256, 616
PciSI	GCTCTTC	1 cut(s)	605
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PdmI	GAANNNNTTC	2 cut(s)	229, 531
PfeI	GAWTC	5 cut(s)	69, 114, 350, 368, 762
PkrI	GCNGC	2 cut(s)	506, 631
PleI	GAGTC	2 cut(s)	211, 504
PpsI	GAGTC	2 cut(s)	211, 504
Ppu21I	YACGTR	1 cut(s)	480
PpuMI	RGGWCCY	1 cut(s)	490
PshAI	GACNNNNGTC	2 cut(s)	495, 675
Psp5II	RGGWCCY	1 cut(s)	490
PspN4I	GGNNCC	2 cut(s)	492, 679
PspPI	GGNCC	4 cut(s)	155, 249, 490, 677
PspPPI	RGGWCCY	1 cut(s)	490
PstI	CTGCAG	1 cut(s)	489
PstNI	CAGNNNCTG	1 cut(s)	632
PvuII	CAGCTG	2 cut(s)	632, 647
SapI	GCTCTTC	1 cut(s)	605
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	2 cut(s)	505, 630
Sau3AI	GATC	4 cut(s)	466, 569, 665, 802
Sau96I	GGNCC	4 cut(s)	155, 249, 490, 677
SchI	GAGTC	2 cut(s)	211, 505
ScrFI	CCNGG	2 cut(s)	208, 681
SduI	GDGCHC	2 cut(s)	24, 554
SfaNI	GCATC	2 cut(s)	275, 742
SfcI	CTRYAG	2 cut(s)	136, 485
SinI	GGWCC	4 cut(s)	155, 249, 490, 677
SnaBI	TACGTA	1 cut(s)	480
Sse9I	AATT	2 cut(s)	447, 578
SsiI	CCGC	1 cut(s)	504
SspMI	CTAG	2 cut(s)	470, 573
StyD4I	CCNGG	2 cut(s)	206, 679
TaaI	ACNGT	2 cut(s)	163, 256
TaiI	ACGT	5 cut(s)	215, 263, 291, 311, 482
TaqI	TCGA	2 cut(s)	233, 773
TasI	AATT	2 cut(s)	447, 578
TauI	GCSGC	1 cut(s)	507
TfiI	GAWTC	5 cut(s)	69, 114, 350, 368, 762
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TscAI	CASTG	2 cut(s)	261, 559
TseFI	GTSAC	2 cut(s)	256, 616
TseI	GCWGC	1 cut(s)	629
Tsp45I	GTSAC	2 cut(s)	256, 616
TspDTI	ATGAA	3 cut(s)	341, 531, 810
TspGWI	ACGGA	1 cut(s)	604
TspRI	CASTG	2 cut(s)	261, 559
VneI	GTGCAC	1 cut(s)	20
VpaK11BI	GGWCC	4 cut(s)	155, 249, 490, 677
XapI	RAATTY	1 cut(s)	578
XbaI	TCTAGA	1 cut(s)	469
XmnI	GAANNNNTTC	2 cut(s)	229, 531
XspI	CTAG	2 cut(s)	470, 573
ZraI	GACGTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.