Rorug04G0026000

Belongs to the glucose-6-phosphate 1-epimerase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
3569626 .. 3571678
2053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0026000.1

Sequence Viewer

Length: 381 bp
ATGGAAGATCTAACTAACAAACTTGTATTGGTCATATCATTTAGAGAGAGAGTAAGGGTGCTGAGAGTAAGAAATTTAGGTGCAATTTTGCTTGTAACTGGGTTCGGAGATGAGTACGAGGTGTTGGGGTCAAATAGCACTGTCCCACTTCCGGGATATGAAGCAGGTCTTTTCTTTGCATACTCAGCATTTGTTCCATTTTGTGAAGCAGACACAATGGATGGCCTTTCATTGCAAAGGCTTTTGGAGAGCACTTCCCAAATTGATATTGGAGCAACAAGAGAAAACTGTTTAGCAGATGACAGGCTATTAGATGGTGTGAAATTTCTGGATCTTGGAGATGGTGCTGGTTGGGAGTTACTCCAGGTTCTCTTACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

13.9

Weight (kDa)

4.39

Isoelectric Point (pI)

22.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 155
AclWI GGATC 1 cut(s) 339
AcsI RAATTY 2 cut(s) 73, 323
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 151, 152
AjnI CCWGG 1 cut(s) 363
Alw21I GWGCWC 1 cut(s) 254
AlwI GGATC 1 cut(s) 339
AoxI GGCC 1 cut(s) 223
ApoI RAATTY 2 cut(s) 73, 323
AsuC2I CCSGG 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 254
BccI CCATC 3 cut(s) 215, 308, 335
BciT130I CCWGG 1 cut(s) 365
BcnI CCSGG 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 155
BglII AGATCT 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 153, 365
BmrFI CCNGG 2 cut(s) 153, 365
BmrI ACTGGG 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 347
BpuMI CCSGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 152
Bse1I ACTGG 1 cut(s) 103
Bse3DI GCAATG 1 cut(s) 230
BseBI CCWGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 151, 152
BseMI GCAATG 1 cut(s) 230
BseMII CTCAG 2 cut(s) 53, 198
BseNI ACTGG 1 cut(s) 103
BshFI GGCC 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 254
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 2 cut(s) 151, 152
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 2 cut(s) 7, 331
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 2 cut(s) 54, 197
BspMI ACCTGC 1 cut(s) 155
BspPI GGATC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 230
BsrI ACTGG 1 cut(s) 103
BssMI GATC 2 cut(s) 7, 331
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 142, 290
BstDEI CTNAG 2 cut(s) 62, 184
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 2 cut(s) 10, 334
BstMBI GATC 2 cut(s) 7, 331
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 2 cut(s) 151, 363
BstX2I RGATCY 2 cut(s) 7, 331
BstYI RGATCY 2 cut(s) 7, 331
BsuRI GGCC 1 cut(s) 225
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 115
CviJI RGCY 3 cut(s) 225, 241, 307
CviKI_1 RGCY 3 cut(s) 225, 241, 307
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 2 cut(s) 62, 184
DpnI GATC 2 cut(s) 9, 333
DpnII GATC 2 cut(s) 7, 331
EcoRII CCWGG 1 cut(s) 363
FaiI YATR 3 cut(s) 35, 159, 181
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FaqI GGGAC 1 cut(s) 128
FokI GGATG 1 cut(s) 233
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 1 cut(s) 225
HapII CCGG 1 cut(s) 152
HpaII CCGG 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 329
HpyCH4III ACNGT 2 cut(s) 142, 290
HpyCH4V TGCA 3 cut(s) 83, 179, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 62, 184
Kzo9I GATC 2 cut(s) 7, 331
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 8 cut(s) 84, 150, 165, 289, 314, 333, 350, 377
MaeIII GTNAC 2 cut(s) 94, 357
MalI GATC 2 cut(s) 9, 333
MboI GATC 2 cut(s) 7, 331
MboII GAAGA 1 cut(s) 17
MflI RGATCY 2 cut(s) 7, 331
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 4 cut(s) 73, 84, 261, 323
MnlI CCTC 1 cut(s) 112
MseI TTAA 1 cut(s) 379
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 153, 365
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 1 cut(s) 185
NciI CCSGG 1 cut(s) 153
NdeII GATC 2 cut(s) 7, 331
PfoI TCCNGGA 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PsuI RGATCY 2 cut(s) 7, 331
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SaqAI TTAA 1 cut(s) 379
Sau3AI GATC 2 cut(s) 7, 331
ScrFI CCNGG 2 cut(s) 153, 365
SduI GDGCHC 1 cut(s) 254
SetI ASST 4 cut(s) 82, 123, 169, 369
Sse9I AATT 4 cut(s) 73, 84, 261, 323
StyD4I CCNGG 2 cut(s) 151, 363
TaaI ACNGT 2 cut(s) 142, 290
TasI AATT 4 cut(s) 73, 84, 261, 323
Tru1I TTAA 1 cut(s) 379
Tru9I TTAA 1 cut(s) 379
TscAI CASTG 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 174, 219
TspRI CASTG 1 cut(s) 145
XapI RAATTY 2 cut(s) 73, 323
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.