Rw4G029130

Belongs to the glucose-6-phosphate 1-epimerase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
55841495 .. 55844626
3132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G029130.1

Sequence Viewer

Length: 309 bp
ATGTCGTCATCTCGTATCCGGAATACCAACTCTGATGGGAAGCCATTCACATTCACGTTTGCATATCACACTTCAGATATCAGTGAAGTTCGTGTAGAAGGCTTGGAGACCCTCGATTATCTGGACAACGTGCAGAACAGGAAAAGTAGTATTGAGCAAGGAGATGCTATAACATTTGAATCGGAGGTGGACAAGATATATATTAGAACTCCTACAAAGATTGCAATTCTGGATCATGAGAAGAAGAGAACATTTGTGGTACGCCAAAGATGGTCTTCCAGATGCCCTGGTGTGGAATCCTTGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.7

Weight (kDa)

6.73

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 6 - 88 2e-11 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 18
AclWI GGATC 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 240
Aor13HI TCCGGA 1 cut(s) 18
Asp700I GAANNNNTTC 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 267
BccI CCATC 2 cut(s) 29, 264
BciT130I CCWGG 1 cut(s) 288
BciVI GTATCC 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 101
BfuI GTATCC 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 2 cut(s) 154, 272
BpiI GAAGAC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 286, 300
BsaWI WCCGGW 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 292
BseAI TCCGGA 1 cut(s) 18
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 2 cut(s) 286, 300
BseLI CCNNNNNNNGG 1 cut(s) 292
BsgI GTGCAG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 1 cut(s) 101
Bso31I GGTCTC 1 cut(s) 101
Bsp13I TCCGGA 1 cut(s) 18
Bsp143I GATC 1 cut(s) 232
BspEI TCCGGA 1 cut(s) 18
BspHI TCATGA 1 cut(s) 235
BspPI GGATC 1 cut(s) 240
BspTNI GGTCTC 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 286, 300
BssMI GATC 1 cut(s) 232
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 288
Bst6I CTCTTC 1 cut(s) 239
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 232
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 267
BsuI GTATCC 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 88
CciI TCATGA 1 cut(s) 235
Csp6I GTAC 1 cut(s) 260
CviAII CATG 1 cut(s) 236
CviJI RGCY 2 cut(s) 43, 102
CviKI_1 RGCY 2 cut(s) 43, 102
CviQI GTAC 1 cut(s) 260
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 101
Eco32I GATATC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 286
EcoRV GATATC 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 1 cut(s) 239
FaiI YATR 5 cut(s) 64, 170, 199, 201, 237
FalI AAGNNNNNCTT 2 cut(s) 259, 291
FatI CATG 1 cut(s) 235
HapII CCGG 1 cut(s) 19
Hin1II CATG 1 cut(s) 239
HinfI GANTC 2 cut(s) 179, 296
HpaII CCGG 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 3 cut(s) 34, 76, 184
Hpy188III TCNNGA 5 cut(s) 19, 122, 230, 236, 279
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 92
HpyCH4IV ACGT 2 cut(s) 56, 129
HpyCH4V TGCA 3 cut(s) 62, 133, 224
HpySE526I ACGT 2 cut(s) 56, 129
Hsp92II CATG 1 cut(s) 239
Kpn2I TCCGGA 1 cut(s) 18
Kzo9I GATC 1 cut(s) 232
LpnPI CCDG 7 cut(s) 32, 107, 124, 215, 273, 292, 300
LweI GCATC 2 cut(s) 154, 272
MaeII ACGT 2 cut(s) 56, 129
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 3 cut(s) 253, 256, 267
MluCI AATT 1 cut(s) 225
MnlI CCTC 2 cut(s) 122, 178
MroI TCCGGA 1 cut(s) 18
MroXI GAANNNNTTC 1 cut(s) 44
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 288
NdeII GATC 1 cut(s) 232
NlaIII CATG 1 cut(s) 239
PagI TCATGA 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 44
PfeI GAWTC 2 cut(s) 179, 296
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
Sau3AI GATC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 288
SetI ASST 3 cut(s) 59, 132, 189
SfaNI GCATC 2 cut(s) 154, 272
Sse9I AATT 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 300
TaiI ACGT 2 cut(s) 59, 132
TaqI TCGA 1 cut(s) 114
TasI AATT 1 cut(s) 225
TfiI GAWTC 2 cut(s) 179, 296
TscAI CASTG 1 cut(s) 88
TspRI CASTG 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.