RLG00000032141

Belongs to the glucose-6-phosphate 1-epimerase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
11340112 .. 11342305
2194 bp
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UTR
Exon/CDS
Intron
RLM00000032141

Sequence Viewer

Length: 444 bp
ATGTTTCTTGTGTTGTGTGAAGATGATGATGTGCAAGTGAGGAAGAAGCTTTATGTGCCGCTAGTGGAGGACAACAATAGTCACATGAGAGTGCTCAATATCTCTTGTGTTGATGATGTGGTTGTGAATTTGATGGATATTTTAAAACCGGCAGCGGTGGATGCCGATGGAAATGAATGCGAAGACAGTAGTGTTTCACTTACTTCTTACAAGCCTTATCATGAAGTTCGTGTAGAAGGCTTGGAGACCATCGATTATCTGGACAACATGCAGAACAGGAAAAGTAGTACTGAGCAAGGAGATGCTATAACATTTGAATCGGAGGTGGACATGATATATCTTAGAACTCCTACAAAGATTGCAATTCTGAATCATGAGAATAAGAGAACATTTGTGGTACGCAAAGATGGTCTTCCAGATGCCCGTAAGGATGAATCAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

16.77

Weight (kDa)

4.58

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 73 - 137 5e-06 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 59, 155
AcsI RAATTY 1 cut(s) 127
AfaI GTAC 2 cut(s) 289, 399
AgsI TTSAA 1 cut(s) 317
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 127
BbsI GAAGAC 2 cut(s) 189, 404
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 164
BccI CCATC 4 cut(s) 127, 161, 257, 401
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 1 cut(s) 62
BisI GCNGC 2 cut(s) 59, 153
BlsI GCNGC 2 cut(s) 60, 154
BmcAI AGTACT 1 cut(s) 289
BmsI GCATC 3 cut(s) 151, 292, 409
BpiI GAAGAC 2 cut(s) 189, 404
Bsa29I ATCGAT 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 148
BseCI ATCGAT 1 cut(s) 252
BseGI GGATG 2 cut(s) 166, 436
BseMII CTCAG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 164
BshVI ATCGAT 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 239
BsmI GAATGC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 96
BspACI CCGC 2 cut(s) 59, 155
BspCNI CTCAG 1 cut(s) 283
BspDI ATCGAT 1 cut(s) 252
BspHI TCATGA 2 cut(s) 220, 373
BspTNI GGTCTC 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 148
BssAI RCCGGY 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 188
BstDEI CTNAG 2 cut(s) 291, 341
BstF5I GGATG 2 cut(s) 166, 436
BstMAI GTCTC 1 cut(s) 239
BstMWI GCNNNNNNNGC 2 cut(s) 55, 161
BstNSI RCATGY 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 2 cut(s) 189, 404
Bsu15I ATCGAT 1 cut(s) 252
BsuTUI ATCGAT 1 cut(s) 252
BtsCI GGATG 2 cut(s) 166, 436
CciI TCATGA 2 cut(s) 220, 373
Cfr10I RCCGGY 1 cut(s) 148
ClaI ATCGAT 1 cut(s) 252
Csp6I GTAC 2 cut(s) 288, 398
CviAII CATG 5 cut(s) 85, 221, 268, 331, 374
CviJI RGCY 3 cut(s) 49, 214, 240
CviKI_1 RGCY 3 cut(s) 49, 214, 240
CviQI GTAC 2 cut(s) 288, 398
DdeI CTNAG 2 cut(s) 291, 341
DraI TTTAAA 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 239
FaeI CATG 5 cut(s) 88, 224, 271, 334, 377
FaiI YATR 8 cut(s) 54, 86, 222, 269, 308, 332, 337, 375
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FatI CATG 5 cut(s) 84, 220, 267, 330, 373
Fnu4HI GCNGC 2 cut(s) 59, 153
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 2 cut(s) 59, 153
FspBI CTAG 1 cut(s) 62
GluI GCNGC 2 cut(s) 59, 153
HapII CCGG 1 cut(s) 149
Hin1II CATG 5 cut(s) 88, 224, 271, 334, 377
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 3 cut(s) 317, 370, 434
HpaII CCGG 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 2 cut(s) 322, 369
Hpy188III TCNNGA 4 cut(s) 221, 260, 374, 416
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4V TGCA 3 cut(s) 34, 271, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 161
HpyF3I CTNAG 2 cut(s) 291, 341
Hsp92II CATG 5 cut(s) 88, 224, 271, 334, 377
LpnPI CCDG 4 cut(s) 162, 245, 262, 429
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 3 cut(s) 151, 292, 409
MaeI CTAG 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 80
MboII GAAGA 4 cut(s) 32, 55, 194, 404
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 2 cut(s) 127, 363
MnlI CCTC 3 cut(s) 33, 61, 316
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 155
MspI CCGG 1 cut(s) 149
Mva1269I GAATGC 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 55, 161
NlaIII CATG 5 cut(s) 88, 224, 271, 334, 377
NmuCI GTSAC 1 cut(s) 80
NspI RCATGY 1 cut(s) 271
PagI TCATGA 2 cut(s) 220, 373
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 3 cut(s) 317, 370, 434
PkrI GCNGC 2 cut(s) 60, 154
RsaI GTAC 2 cut(s) 289, 399
RsaNI GTAC 2 cut(s) 288, 398
RseI CAYNNNNRTG 1 cut(s) 89
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 2 cut(s) 59, 153
ScaI AGTACT 1 cut(s) 289
SduI GDGCHC 1 cut(s) 96
SetI ASST 2 cut(s) 51, 327
SfaNI GCATC 3 cut(s) 151, 292, 409
SmiMI CAYNNNNRTG 1 cut(s) 89
Sse9I AATT 2 cut(s) 127, 363
SsiI CCGC 2 cut(s) 59, 155
SspMI CTAG 1 cut(s) 62
TaaI ACNGT 1 cut(s) 188
TaqI TCGA 1 cut(s) 252
TasI AATT 2 cut(s) 127, 363
TatI WGTACW 1 cut(s) 287
TauI GCSGC 1 cut(s) 61
TfiI GAWTC 3 cut(s) 317, 370, 434
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 189, 237
XapI RAATTY 1 cut(s) 127
XceI RCATGY 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XspI CTAG 1 cut(s) 62
ZrmI AGTACT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.