Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000789

Physical Location & Seq

Genomic Coordinates Forward (+)

6856558 .. 6859256

Gene Structure 2699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG047200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGACTGCTAATCTCGGTTCTCCAATACTGCGTGCTGTTTCAGAATTCTCTACTACACCGGAAAGATCCACGAGATTCACGAGGTCAGAGGCCGAGACGGCGTTGCCGTCAAAATGGATTCCATGGATTTTTTTGGTTGGGGGGGGGGGGGGGGGTGGGAAGAGAAAGGAATTACCATTCAGTTTACTGCACTTGGAATGCTTATCAGATGATGATGTGCAAGTGAGGAAGAAGCTTTATGCGCCGCTAGTGGAGGACAAGAATAGTCACATGAGAGTGCTCAACATCTCTTGTGTTGATGATCTGGTTGTGAATTTGATGGATATTTTAAAACCGGCTGCGGTGGATGCCGATGGAAATGAATGCGAAGAAGTGAAGTTCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016882 GO:0018130 GO:0019438 GO:0019752 GO:0030272 GO:0034641 GO:0035999 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0046653 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

5-FTHF_cyc-lig

Protein Analysis

128

Amino Acids

14.1

Weight (kDa)

5.17

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57330
fragaria_vesca	FvH4_4g07740 FvH4_4g07740 FvH4_4g07740 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010
malus_domestica	MD05G1327600.v1.1 MD09G1230300.v1.1 MD13G1246400.v1.1 MD16G1253800.v1.1 MD17G1229200.v1.1
prunus_persica	Prupe.1G081500_v2.0.a1 Prupe.1G081500_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G292800_v2.0.a1
pyrus_communis	pycom09g14950 pycom13g21740 pycom13g21750 pycom14g13110 pycom16g21500 pycom17g23160
rosa_chinensis	RchiOBHm_Chr3g0475991 RchiOBHm_Chr4g0400811 RchiOBHm_Chr5g0018411
rosa_laevigata	RLG00000009179 RLG00000021107 RLG00000032141 RLG00000032366 RLG00000034317
rosa_multiflora	Rmu_sc0002141.1_g000020 Rmu_sc0004591.1_g000012 Rmu_sc0040059.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033540 Rroxscaffold_1G00059320 Rroxscaffold_2G00112700 Rroxscaffold_4G00322360 Rroxscaffold_5G00345630 Rroxscaffold_5G00348000
rosa_rugosa	Rorug01G0058800 Rorug02G0299000 Rorug02G0299100 Rorug04G0026000 Rorug05G0043600 Rorug06G0305200
rosa_samantha	Rh1AG113800 Rh1AG183300 Rh3BG233300 Rh4AG103900 Rh4BG098800 Rh4CG112100 Rh4DG095700 Rh6AG047200 Rh6AG174700 Rh6BG293500 Rh6BG425100
rosa_wichuraiana	Rw4G008400 Rw4G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	245, 341
AclWI	GGATC	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	44, 313
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	60
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	338
ApoI	RAATTY	2 cut(s)	44, 313
AspLEI	GCGC	1 cut(s)	244
BauI	CACGAG	2 cut(s)	70, 79
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	2 cut(s)	313, 347
BceAI	ACGGC	2 cut(s)	91, 114
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	1 cut(s)	248
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	2 cut(s)	245, 339
BlsI	GCNGC	2 cut(s)	246, 340
BmsI	GCATC	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	122
BsaWI	WCCGGW	1 cut(s)	58
Bse118I	RCCGGY	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	325
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	59, 335
BsmAI	GTCTC	1 cut(s)	89
BsmBI	CGTCTC	1 cut(s)	89
BsmI	GAATGC	2 cut(s)	203, 368
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	65, 301
Bsp19I	CCATGG	1 cut(s)	122
BspACI	CCGC	2 cut(s)	245, 341
BspANI	GGCC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	334
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	2 cut(s)	65, 301
BssSI	CACGAG	2 cut(s)	70, 79
BssT1I	CCWWGG	1 cut(s)	122
Bst2BI	CACGAG	2 cut(s)	70, 79
Bst6I	CTCTTC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	2 cut(s)	68, 304
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	2 cut(s)	65, 301
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 241, 347
BstV1I	GCAGC	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	92
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	334
CviAII	CATG	2 cut(s)	123, 271
CviJI	RGCY	3 cut(s)	92, 235, 338
CviKI_1	RGCY	3 cut(s)	92, 235, 338
DpnI	GATC	2 cut(s)	67, 303
DpnII	GATC	2 cut(s)	65, 301
DraI	TTTAAA	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	122
EcoRI	GAATTC	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	122
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	2 cut(s)	126, 274
FaiI	YATR	3 cut(s)	124, 240, 272
FatI	CATG	2 cut(s)	122, 270
Fnu4HI	GCNGC	2 cut(s)	245, 339
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	2 cut(s)	245, 339
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	2 cut(s)	245, 339
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	2 cut(s)	59, 335
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	2 cut(s)	126, 274
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	2 cut(s)	75, 118
HpaII	CCGG	2 cut(s)	59, 335
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	3 cut(s)	43, 88, 208
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	190, 220
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 241, 347
Hsp92II	CATG	2 cut(s)	126, 274
HspAI	GCGC	1 cut(s)	242
Kzo9I	GATC	2 cut(s)	65, 301
LpnPI	CCDG	3 cut(s)	72, 290, 348
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	2 cut(s)	67, 303
MboI	GATC	2 cut(s)	65, 301
MboII	GAAGA	3 cut(s)	172, 241, 380
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	3 cut(s)	44, 170, 313
MnlI	CCTC	4 cut(s)	75, 82, 219, 247
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	275
MspI	CCGG	2 cut(s)	59, 335
Mva1269I	GAATGC	2 cut(s)	203, 368
MwoI	GCNNNNNNNGC	3 cut(s)	98, 241, 347
NcoI	CCATGG	1 cut(s)	122
NdeII	GATC	2 cut(s)	65, 301
NlaIII	CATG	2 cut(s)	126, 274
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	2 cut(s)	77, 104
PctI	GAATGC	2 cut(s)	203, 368
PfeI	GAWTC	2 cut(s)	75, 118
PkrI	GCNGC	2 cut(s)	246, 340
PsuI	RGATCY	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	2 cut(s)	245, 339
Sau3AI	GATC	2 cut(s)	65, 301
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	2 cut(s)	86, 237
SfaNI	GCATC	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	275
Sse9I	AATT	3 cut(s)	44, 170, 313
SsiI	CCGC	2 cut(s)	245, 341
SspMI	CTAG	1 cut(s)	248
StyI	CCWWGG	1 cut(s)	122
TasI	AATT	3 cut(s)	44, 170, 313
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	2 cut(s)	75, 118
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	375
XapI	RAATTY	2 cut(s)	44, 313
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.