Rroxscaffold_2G00112700

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000789
Physical Location & Seq
Forward (+)
38021682 .. 38022855
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00112700.1

Sequence Viewer

Length: 243 bp
ATGTGTTCTGGTGTTCAGGAGAAGGAGAAGGTGTTGGTGGAGTATTGTAAGGCCGCCAATGGCCTCGAGAAGGTCGTTCTCAAAGAGCTCCGTGGCTCTTCCGCTGAGGTGTATTTATATGGGGCCCAAGTTTCATCGTGGAAAAATGAACATGGGGAAGAATTGCTTTTCGTAAGCAGTAAGGTATCTGATCTGAATAAAGATGTTGCATACCAGCTGTTTCATAGGTTCTATGTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

80

Amino Acids

9.09

Weight (kDa)

5.65

Isoelectric Point (pI)

16.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 54, 102
AfiI CCNNNNNNNGG 1 cut(s) 70
AluBI AGCT 2 cut(s) 88, 217
AluI AGCT 2 cut(s) 88, 217
Alw21I GWGCWC 1 cut(s) 90
Ama87I CYCGRG 1 cut(s) 65
AoxI GGCC 3 cut(s) 51, 61, 123
ApaI GGGCCC 1 cut(s) 127
AspS9I GGNCC 2 cut(s) 123, 124
AvaI CYCGRG 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 127
BanII GRGCYC 2 cut(s) 90, 127
Bbv12I GWGCWC 1 cut(s) 90
BbvCI CCTCAGC 1 cut(s) 105
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 65
BmgT120I GGNCC 2 cut(s) 123, 124
BmiI GGNNCC 2 cut(s) 124, 125
Bpu10I CCTNAGC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 127
BshFI GGCC 3 cut(s) 53, 63, 125
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 70
BsnI GGCC 3 cut(s) 53, 63, 125
BsoBI CYCGRG 1 cut(s) 65
Bsp120I GGGCCC 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 90, 127
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 2 cut(s) 54, 102
BspANI GGCC 3 cut(s) 53, 63, 125
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 124, 125
BspQI GCTCTTC 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 105
BstDSI CCRYGG 1 cut(s) 91
BstENI CCTNNNNNAGG 1 cut(s) 68
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 127
BsuRI GGCC 3 cut(s) 53, 63, 125
BtgI CCRYGG 1 cut(s) 91
Cfr13I GGNCC 2 cut(s) 123, 124
CviAII CATG 1 cut(s) 152
CviJI RGCY 6 cut(s) 53, 63, 88, 96, 125, 217
CviKI_1 RGCY 6 cut(s) 53, 63, 88, 96, 125, 217
DdeI CTNAG 1 cut(s) 105
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 88
Eco24I GRGCYC 2 cut(s) 90, 127
Eco53kI GAGCTC 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 65
EcoICRI GAGCTC 1 cut(s) 88
EcoNI CCTNNNNNAGG 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 123
EcoT38I GRGCYC 2 cut(s) 90, 127
FaeI CATG 1 cut(s) 155
FaiI YATR 6 cut(s) 118, 120, 153, 211, 225, 234
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FatI CATG 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 54
FriOI GRGCYC 2 cut(s) 90, 127
Fsp4HI GCNGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 3 cut(s) 53, 63, 125
Hin1II CATG 1 cut(s) 155
Hpy188I TCNGA 2 cut(s) 190, 195
Hpy188III TCNNGA 2 cut(s) 17, 67
HpyAV CCTTC 3 cut(s) 16, 22, 64
HpyCH4V TGCA 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 105
Hsp92II CATG 1 cut(s) 155
Kzo9I GATC 1 cut(s) 190
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 2 cut(s) 2, 227
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 2 cut(s) 90, 170
MhlI GDGCHC 2 cut(s) 90, 127
MluCI AATT 1 cut(s) 161
MnlI CCTC 2 cut(s) 74, 100
MspA1I CMGCKG 2 cut(s) 104, 217
NdeII GATC 1 cut(s) 190
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 2 cut(s) 124, 125
PaeR7I CTCGAG 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 103
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PkrI GCNGC 1 cut(s) 55
Psp124BI GAGCTC 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 124, 125
PspOMI GGGCCC 1 cut(s) 123
PspPI GGNCC 2 cut(s) 123, 124
PvuII CAGCTG 1 cut(s) 217
SacI GAGCTC 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 103
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 2 cut(s) 123, 124
SduI GDGCHC 2 cut(s) 90, 127
SetI ASST 7 cut(s) 33, 75, 90, 111, 186, 219, 230
Sfr274I CTCGAG 1 cut(s) 65
SgeI CNNG 9 cut(s) 21, 29, 77, 79, 104, 140, 150, 164, 226
SlaI CTCGAG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 1 cut(s) 161
SsiI CCGC 2 cut(s) 54, 102
SstI GAGCTC 1 cut(s) 90
TaqI TCGA 1 cut(s) 66
TasI AATT 1 cut(s) 161
TauI GCSGC 1 cut(s) 56
TspDTI ATGAA 3 cut(s) 123, 162, 212
TspGWI ACGGA 1 cut(s) 80
XagI CCTNNNNNAGG 1 cut(s) 68
XhoI CTCGAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.