FvH4_6g28010

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000789
Physical Location & Seq
Reverse (-)
21544290 .. 21550122
5833 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28010.t9

Sequence Viewer

Length: 963 bp
ATGTCGTCTGGGGTTGGGGAGAAAGAGAAGGAGAAGGAGCAGGTGTTGGTGGAGTATTGTAAGGCCCCCAATGGCCTTGAGAAGGTTGTTCTCAAAGAGCTCCGTGGTTCTTCGGCTGAGGTGTATTTATATGGGGCTCAAGTTTCCTCATGGAAAAATGAACACCGGGAAGAATTGCTTTTCATGAGTAGTAAGGCTACATATAAGTCTCCTAGGCCTATTCGTGGTGGAATTCCGATATGTTTTCCACAATTTGGAAATCTTGGTTCTCTTGAGCAACATGGATTTGCTAGAAATAGATTTTGGAGTATTGATCAAGATCCCCCACCTCATCCACCAGATAGTGGGAATAAGGCTTTCATTGATCTAATCCTGAGGACATCTGAAGAAGATTTAAAGATATGGCCTCACAGATATGAATTTCGACTTAGGGTAACCCTGGGACCTGGAGGAGACTTAATGCTGAATTCCCGCATTAGAAACACAAACACTGACGGAAAGTCGTTTACATTCACATTTGCTTATCACACCTATTTGGCTGTAACTGATATCAGTGAAGTGCGAGTAGAAGGATTAGAGACATTGGATTATCTGGACAACTTGAAGAATAGAGAGCGGTTTACTGAACAAGGGGATGCCATAACTTTCGAATCAGAAGTGGATAAAGTTTATCTTGGTACACCTACCAAAATTGCTATTTTGGACCATGAAAGAAAGAGAACATTTGTATTACGAAAGGATGGACTTCCAGATGCTGTTGTTTGGAATCCATGGGATAAGAAAGCGAAGGTGATTCCTGATTTTGGGGATGATGAATACAAGCATATGCTTTGTGTCCAGGCTGCTTGCGTGGAGACGCCTATTACTTTGAAACCCGGTGAAGAATGGAGAGGAAGGCAAGAACTATCTGCTGTTCCTTCCAGTTACTGTAGTGGAAAACTTGACCCCAATAAGGTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

321

Amino Acids

36.43

Weight (kDa)

5.91

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 28 - 302 3.6e-66 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 31
Acc36I ACCTGC 1 cut(s) 31
AccB7I CCANNNNNTGG 2 cut(s) 254, 344
AccBSI CCGCTC 1 cut(s) 616
AciI CCGC 2 cut(s) 472, 616
AclWI GGATC 1 cut(s) 314
AcsI RAATTY 3 cut(s) 231, 419, 466
AcuI CTGAAG 1 cut(s) 405
AcyI GRCGYC 1 cut(s) 857
AfaI GTAC 1 cut(s) 679
AfiI CCNNNNNNNGG 6 cut(s) 82, 224, 254, 344, 803, 952
AgsI TTSAA 2 cut(s) 604, 871
AhdI GACNNNNNGTC 1 cut(s) 499
AjnI CCWGG 3 cut(s) 438, 445, 837
AjuI GAANNNNNNNTTGG 2 cut(s) 286, 318
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 4 cut(s) 213, 447, 572, 848
AlwI GGATC 1 cut(s) 314
AlwNI CAGNNNCTG 2 cut(s) 755, 927
AoxI GGCC 4 cut(s) 63, 73, 215, 404
ApeKI GCWGC 1 cut(s) 842
ApoI RAATTY 3 cut(s) 231, 419, 466
AspA2I CCTAGG 1 cut(s) 212
AspS9I GGNCC 3 cut(s) 64, 443, 703
AsuC2I CCSGG 2 cut(s) 167, 876
AsuHPI GGTGA 2 cut(s) 802, 890
AsuII TTCGAA 1 cut(s) 648
AvaII GGWCC 2 cut(s) 443, 703
AvrII CCTAGG 1 cut(s) 212
AxyI CCTNAGG 1 cut(s) 374
BanII GRGCYC 2 cut(s) 102, 139
Bbv12I GWGCWC 1 cut(s) 102
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 829
BccI CCATC 1 cut(s) 734
BciT130I CCWGG 3 cut(s) 440, 447, 839
BclI TGATCA 1 cut(s) 313
BcnI CCSGG 2 cut(s) 167, 876
BcoDI GTCTC 4 cut(s) 213, 447, 572, 848
BfaI CTAG 2 cut(s) 213, 291
BfmI CTRYAG 1 cut(s) 928
BfuAI ACCTGC 1 cut(s) 31
BisI GCNGC 1 cut(s) 843
BlnI CCTAGG 1 cut(s) 212
BlsI GCNGC 1 cut(s) 844
Bme1390I CCNGG 5 cut(s) 167, 440, 447, 839, 876
Bme18I GGWCC 2 cut(s) 443, 703
BmeRI GACNNNNNGTC 1 cut(s) 499
BmgT120I GGNCC 3 cut(s) 64, 443, 703
BmiI GGNNCC 2 cut(s) 66, 444
BmrFI CCNGG 5 cut(s) 167, 440, 447, 839, 876
BmsI GCATC 2 cut(s) 625, 742
BpmI CTGGAG 1 cut(s) 468
Bpu10I CCTNAGC 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 648
BpuEI CTTGAG 3 cut(s) 98, 123, 293
BpuMI CCSGG 2 cut(s) 167, 876
BsaBI GATNNNNATC 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 857
BsaJI CCNNGG 5 cut(s) 103, 212, 438, 439, 770
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 6 cut(s) 82, 224, 254, 344, 803, 952
Bse1I ACTGG 1 cut(s) 921
Bse21I CCTNAGG 1 cut(s) 374
Bse8I GATNNNNATC 1 cut(s) 318
BseBI CCWGG 3 cut(s) 440, 447, 839
BseDI CCNNGG 5 cut(s) 103, 212, 438, 439, 770
BseGI GGATG 4 cut(s) 331, 640, 745, 814
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 6 cut(s) 82, 224, 254, 344, 803, 952
BseMII CTCAG 2 cut(s) 108, 365
BseNI ACTGG 1 cut(s) 921
BseRI GAGGAG 1 cut(s) 465
BseXI GCAGC 1 cut(s) 829
BshFI GGCC 4 cut(s) 65, 75, 217, 406
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 2 cut(s) 166, 876
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 6 cut(s) 82, 224, 254, 344, 803, 952
BsmAI GTCTC 4 cut(s) 213, 447, 572, 848
BsmBI CGTCTC 1 cut(s) 848
BsmFI GGGAC 1 cut(s) 456
BsnI GGCC 4 cut(s) 65, 75, 217, 406
Bsp119I TTCGAA 1 cut(s) 648
Bsp1286I GDGCHC 2 cut(s) 102, 139
Bsp143I GATC 3 cut(s) 313, 319, 364
Bsp19I CCATGG 1 cut(s) 770
BspACI CCGC 2 cut(s) 472, 616
BspANI GGCC 4 cut(s) 65, 75, 217, 406
BspCNI CTCAG 2 cut(s) 109, 366
BspHI TCATGA 1 cut(s) 183
BspLI GGNNCC 2 cut(s) 66, 444
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 1 cut(s) 314
BspT104I TTCGAA 1 cut(s) 648
BsrBI CCGCTC 1 cut(s) 616
BsrI ACTGG 1 cut(s) 921
BssECI CCNNGG 5 cut(s) 103, 212, 438, 439, 770
BssMI GATC 3 cut(s) 313, 319, 364
BssNI GRCGYC 1 cut(s) 857
BssT1I CCWWGG 2 cut(s) 212, 770
Bst2UI CCWGG 3 cut(s) 440, 447, 839
Bst4CI ACNGT 1 cut(s) 929
BstACI GRCGYC 1 cut(s) 857
BstBI TTCGAA 1 cut(s) 648
BstC8I GCNNGC 1 cut(s) 847
BstDEI CTNAG 3 cut(s) 117, 374, 428
BstDSI CCRYGG 2 cut(s) 103, 770
BstEII GGTNACC 1 cut(s) 433
BstENI CCTNNNNNAGG 1 cut(s) 80
BstF5I GGATG 4 cut(s) 331, 640, 745, 814
BstKTI GATC 3 cut(s) 316, 322, 367
BstMAI GTCTC 4 cut(s) 213, 447, 572, 848
BstMBI GATC 3 cut(s) 313, 319, 364
BstNI CCWGG 3 cut(s) 440, 447, 839
BstPI GGTNACC 1 cut(s) 433
BstSCI CCNGG 5 cut(s) 165, 438, 445, 837, 874
BstSFI CTRYAG 1 cut(s) 928
BstV1I GCAGC 1 cut(s) 829
BstX2I RGATCY 1 cut(s) 319
BstXI CCANNNNNNTGG 1 cut(s) 955
BstYI RGATCY 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 374
BsuRI GGCC 4 cut(s) 65, 75, 217, 406
BtgI CCRYGG 2 cut(s) 103, 770
BtsCI GGATG 4 cut(s) 331, 640, 745, 814
BtsIMutI CAGTG 2 cut(s) 489, 559
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 847
CaiI CAGNNNCTG 2 cut(s) 755, 927
CciI TCATGA 1 cut(s) 183
Cfr13I GGNCC 3 cut(s) 64, 443, 703
CseI GACGC 1 cut(s) 865
Csp6I GTAC 1 cut(s) 678
CviAII CATG 5 cut(s) 150, 184, 281, 707, 771
CviQI GTAC 1 cut(s) 678
DdeI CTNAG 3 cut(s) 117, 374, 428
DpnI GATC 3 cut(s) 315, 321, 366
DpnII GATC 3 cut(s) 313, 319, 364
DraI TTTAAA 1 cut(s) 396
DriI GACNNNNNGTC 1 cut(s) 499
Eam1105I GACNNNNNGTC 1 cut(s) 499
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 212, 770
Eco147I AGGCCT 1 cut(s) 217
Eco24I GRGCYC 2 cut(s) 102, 139
Eco32I GATATC 1 cut(s) 550
Eco47I GGWCC 2 cut(s) 443, 703
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 405
Eco81I CCTNAGG 1 cut(s) 374
Eco91I GGTNACC 1 cut(s) 433
EcoICRI GAGCTC 1 cut(s) 100
EcoNI CCTNNNNNAGG 1 cut(s) 80
EcoO109I RGGNCCY 2 cut(s) 64, 443
EcoO65I GGTNACC 1 cut(s) 433
EcoRI GAATTC 2 cut(s) 231, 466
EcoRII CCWGG 3 cut(s) 438, 445, 837
EcoRV GATATC 1 cut(s) 550
EcoT14I CCWWGG 2 cut(s) 212, 770
EcoT38I GRGCYC 2 cut(s) 102, 139
ErhI CCWWGG 2 cut(s) 212, 770
Esp3I CGTCTC 1 cut(s) 848
FaeI CATG 5 cut(s) 153, 187, 284, 710, 774
FalI AAGNNNNNCTT 4 cut(s) 162, 194, 657, 689
FaqI GGGAC 1 cut(s) 456
FatI CATG 5 cut(s) 149, 183, 280, 706, 770
FauI CCCGC 1 cut(s) 479
FauNDI CATATG 1 cut(s) 825
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 843
FokI GGATG 4 cut(s) 318, 647, 752, 821
FriOI GRGCYC 2 cut(s) 102, 139
Fsp4HI GCNGC 1 cut(s) 843
FspBI CTAG 2 cut(s) 213, 291
GluI GCNGC 1 cut(s) 843
GsuI CTGGAG 1 cut(s) 468
HaeIII GGCC 4 cut(s) 65, 75, 217, 406
HapII CCGG 2 cut(s) 166, 876
HgaI GACGC 1 cut(s) 865
Hin1I GRCGYC 1 cut(s) 857
Hin1II CATG 5 cut(s) 153, 187, 284, 710, 774
HinfI GANTC 3 cut(s) 650, 766, 793
HpaII CCGG 2 cut(s) 166, 876
HphI GGTGA 2 cut(s) 802, 890
Hpy166II GTNNAC 4 cut(s) 507, 621, 680, 958
Hpy188I TCNGA 3 cut(s) 237, 385, 655
Hpy188III TCNNGA 7 cut(s) 184, 272, 317, 373, 593, 749, 797
Hpy8I GTNNAC 4 cut(s) 507, 621, 680, 958
HpyAV CCTTC 7 cut(s) 22, 28, 76, 563, 781, 888, 927
HpyCH4III ACNGT 1 cut(s) 929
HpyF3I CTNAG 3 cut(s) 117, 374, 428
Hsp92I GRCGYC 1 cut(s) 857
Hsp92II CATG 5 cut(s) 153, 187, 284, 710, 774
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 3 cut(s) 313, 319, 364
LmnI GCTCC 2 cut(s) 37, 105
Lsp1109I GCAGC 1 cut(s) 829
LweI GCATC 2 cut(s) 625, 742
MaeI CTAG 2 cut(s) 213, 291
MaeIII GTNAC 3 cut(s) 433, 541, 923
MalI GATC 3 cut(s) 315, 321, 366
MbiI CCGCTC 1 cut(s) 616
MboI GATC 3 cut(s) 313, 319, 364
MboII GAAGA 6 cut(s) 102, 182, 398, 401, 616, 893
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 2 cut(s) 102, 139
MluCI AATT 6 cut(s) 173, 231, 251, 419, 466, 690
MnlI CCTC 7 cut(s) 112, 157, 339, 369, 417, 443, 884
MseI TTAA 2 cut(s) 395, 458
MslI CAYNNNNRTG 1 cut(s) 414
MspI CCGG 2 cut(s) 166, 876
MspR9I CCNGG 5 cut(s) 167, 440, 447, 839, 876
MvaI CCWGG 3 cut(s) 440, 447, 839
NciI CCSGG 2 cut(s) 167, 876
NcoI CCATGG 1 cut(s) 770
NdeI CATATG 1 cut(s) 825
NdeII GATC 3 cut(s) 313, 319, 364
NlaIII CATG 5 cut(s) 153, 187, 284, 710, 774
NlaIV GGNNCC 2 cut(s) 66, 444
NspV TTCGAA 1 cut(s) 648
PagI TCATGA 1 cut(s) 183
PaqCI CACCTGC 1 cut(s) 31
PasI CCCWGGG 1 cut(s) 439
PceI AGGCCT 1 cut(s) 217
PfeI GAWTC 3 cut(s) 650, 766, 793
PflMI CCANNNNNTGG 2 cut(s) 254, 344
PkrI GCNGC 1 cut(s) 844
PpuMI RGGWCCY 1 cut(s) 443
Psp124BI GAGCTC 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 443
Psp6I CCWGG 3 cut(s) 438, 445, 837
PspEI GGTNACC 1 cut(s) 433
PspGI CCWGG 3 cut(s) 438, 445, 837
PspN4I GGNNCC 2 cut(s) 66, 444
PspPI GGNCC 3 cut(s) 64, 443, 703
PspPPI RGGWCCY 1 cut(s) 443
PstNI CAGNNNCTG 2 cut(s) 755, 927
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 1 cut(s) 679
RsaNI GTAC 1 cut(s) 678
RseI CAYNNNNRTG 1 cut(s) 414
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 395, 458
SatI GCNGC 1 cut(s) 843
Sau3AI GATC 3 cut(s) 313, 319, 364
Sau96I GGNCC 3 cut(s) 64, 443, 703
ScrFI CCNGG 5 cut(s) 167, 440, 447, 839, 876
SduI GDGCHC 2 cut(s) 102, 139
SfaNI GCATC 2 cut(s) 625, 742
SfcI CTRYAG 1 cut(s) 928
SfuI TTCGAA 1 cut(s) 648
SinI GGWCC 2 cut(s) 443, 703
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 3 cut(s) 77, 138, 272
SmoI CTYRAG 3 cut(s) 77, 138, 272
Sse9I AATT 6 cut(s) 173, 231, 251, 419, 466, 690
SseBI AGGCCT 1 cut(s) 217
SsiI CCGC 2 cut(s) 472, 616
SspMI CTAG 2 cut(s) 213, 291
SstI GAGCTC 1 cut(s) 102
StuI AGGCCT 1 cut(s) 217
StyD4I CCNGG 5 cut(s) 165, 438, 445, 837, 874
StyI CCWWGG 2 cut(s) 212, 770
TaaI ACNGT 1 cut(s) 929
TaqI TCGA 2 cut(s) 424, 648
TasI AATT 6 cut(s) 173, 231, 251, 419, 466, 690
TfiI GAWTC 3 cut(s) 650, 766, 793
Tru1I TTAA 2 cut(s) 395, 458
Tru9I TTAA 2 cut(s) 395, 458
TscAI CASTG 2 cut(s) 496, 559
TseI GCWGC 1 cut(s) 842
TspDTI ATGAA 6 cut(s) 172, 174, 349, 432, 723, 828
TspGWI ACGGA 2 cut(s) 92, 510
TspRI CASTG 2 cut(s) 496, 559
Van91I CCANNNNNTGG 2 cut(s) 254, 344
VpaK11BI GGWCC 2 cut(s) 443, 703
XagI CCTNNNNNAGG 1 cut(s) 80
XapI RAATTY 3 cut(s) 231, 419, 466
XmaJI CCTAGG 1 cut(s) 212
XspI CTAG 2 cut(s) 213, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.