Rroxscaffold_5G00345630

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000789
Physical Location & Seq
Forward (+)
16061085 .. 16069692
8608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00345630.1

Sequence Viewer

Length: 1140 bp
ATGAGTAGCGAAAAGGTTCCCAATCCCATTGCTACTACTGCTGCGAACGCCAAGGCCACTCCTCCTCACGGCGTCGAGTTCGTTAAGGGCGTCAATGGCCTCGACAAGGTCGTTCTCCGTGATCCGCGCGGCAGTCTCGCCGAGGTTTTCTTTGATTATAATCCTAACTTCAATTCTGAAATTGTTCTTAAGGCCACAATAGCTGTATTGTTCATATTTCATTTGTCAGACCACCAAACCTTAGCGCACAAGGAATCCTTTGTGCTTAGTAGAAATGCTGTGTGGAACAGCTGGCATTGCTGTGTCAGCAAATCAGTAGTGGTGTATTTGTATGGGGGTCATGTAACATCATGGAAGAATGACCAGGGGGAGGAATTGCTATTTGTCAGCAATAAGGGAACTTGCACTCTGTCTATGCAGTTTTCAAATCTTGGTTCTCTTGATGCACATGGATTTGCTAGAAACAGATTTTGGAGCATTGACCCTGATCCATCTCCTTTTCCAACAAATACTTCCAATAAGGTTTTTGTTGATTTGATTCTTAAGCCTACTGAAGAAGATATTAAGACTTGGCCTTATAGCTATGAGTTCCGGCTGCGAGTAGCTTTGGGACCTGGAGGAGATCTGATGTTGACGTCTCGCATCCGGAATACCAACTCTGATGGGAAGCCATTCACATTCACGTTTGCTTATCATACTTATTTCTCTGTTTCAGATATAAGTGAAGTTCGTGTAGAAGGCTTGGAGACCCTCGATTATCTGGACAACATGCAGGACAGGAAACGTTGTACTGAGCAAGGGGATGCTATAACATTTGAATCGGAGGTTGACAAGATATATCTTAGCACTCCTACAAAGATTGCAATTCTGGATCATGAGAAGAAGAGAACATTTGTAATACGTAAAGATGGGCTTCCAGATGCTGTGGTGTGGAATCCCTGGGATAAGAAGGCAAAGGCTATGGCTGATTTTGGAGATGATGAATACAAACATATGCTCTGTGTGGAGGCTGCTGCTATTGAGAGACCCATCACATTGAAACCCGGAGAGGAGTGGAGAGGAAGGCAGGAGCTTTCAGCTGTTCCTTCCAGTTACTGTAGTGGGCAACTTGATCCTCGAAAGGTTCTCCAGGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

379

Amino Acids

42.65

Weight (kDa)

5.96

Isoelectric Point (pI)

29.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 142 - 358 1.1e-52 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 159
AatII GACGTC 1 cut(s) 638
AccII CGCG 2 cut(s) 127, 129
AccIII TCCGGA 1 cut(s) 645
AciI CCGC 2 cut(s) 125, 129
AclI AACGTT 1 cut(s) 784
AclWI GGATC 4 cut(s) 116, 482, 879, 1106
AcuI CTGAAG 1 cut(s) 573
AcyI GRCGYC 3 cut(s) 72, 90, 635
AfaI GTAC 1 cut(s) 790
AfiI CCNNNNNNNGG 3 cut(s) 68, 106, 370
AflII CTTAAG 2 cut(s) 188, 542
AgsI TTSAA 4 cut(s) 172, 426, 818, 1039
AjnI CCWGG 4 cut(s) 363, 613, 938, 1128
AjuI GAANNNNNNNTTGG 4 cut(s) 454, 486, 496, 528
AluBI AGCT 6 cut(s) 203, 291, 582, 605, 1072, 1079
AluI AGCT 6 cut(s) 203, 291, 582, 605, 1072, 1079
Alw26I GTCTC 4 cut(s) 140, 642, 740, 1018
AlwI GGATC 4 cut(s) 116, 482, 879, 1106
AlwNI CAGNNNCTG 2 cut(s) 923, 1095
Aor13HI TCCGGA 1 cut(s) 645
AoxI GGCC 4 cut(s) 54, 97, 192, 572
ApeKI GCWGC 4 cut(s) 41, 595, 1010, 1013
Asp700I GAANNNNTTC 3 cut(s) 15, 183, 671
AspLEI GCGC 2 cut(s) 129, 247
AspS9I GGNCC 1 cut(s) 611
AsuC2I CCSGG 1 cut(s) 1044
AvaII GGWCC 1 cut(s) 611
BbvI GCAGC 4 cut(s) 28, 582, 997, 1000
BccI CCATC 4 cut(s) 499, 656, 902, 1037
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 4 cut(s) 365, 615, 940, 1130
BcnI CCSGG 1 cut(s) 1044
BcoDI GTCTC 4 cut(s) 140, 642, 740, 1018
BfaI CTAG 1 cut(s) 459
BfmI CTRYAG 1 cut(s) 1096
BfrI CTTAAG 2 cut(s) 188, 542
BglII AGATCT 1 cut(s) 622
BisI GCNGC 5 cut(s) 42, 130, 596, 1011, 1014
BlsI GCNGC 5 cut(s) 43, 131, 597, 1012, 1015
Bme1390I CCNGG 5 cut(s) 365, 615, 940, 1044, 1130
Bme18I GGWCC 1 cut(s) 611
BmgT120I GGNCC 1 cut(s) 611
BmiI GGNNCC 2 cut(s) 18, 612
BmrFI CCNGG 5 cut(s) 365, 615, 940, 1044, 1130
BmsI GCATC 4 cut(s) 433, 651, 793, 910
BpmI CTGGAG 2 cut(s) 636, 1112
Bpu10I CCTNAGC 1 cut(s) 241
BpuMI CCSGG 1 cut(s) 1044
BsaAI YACGTR 1 cut(s) 902
BsaBI GATNNNNATC 1 cut(s) 159
BsaHI GRCGYC 3 cut(s) 72, 90, 635
BsaI GGTCTC 2 cut(s) 740, 1018
BsaJI CCNNGG 6 cut(s) 51, 141, 364, 938, 939, 1129
BsaWI WCCGGW 1 cut(s) 645
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 106, 370
Bse1I ACTGG 1 cut(s) 1089
Bse3DI GCAATG 2 cut(s) 27, 295
Bse8I GATNNNNATC 1 cut(s) 159
BseAI TCCGGA 1 cut(s) 645
BseBI CCWGG 4 cut(s) 365, 615, 940, 1130
BseDI CCNNGG 6 cut(s) 51, 141, 364, 938, 939, 1129
BseGI GGATG 2 cut(s) 642, 808
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 3 cut(s) 68, 106, 370
BseMI GCAATG 2 cut(s) 27, 295
BseMII CTCAG 1 cut(s) 783
BseNI ACTGG 1 cut(s) 1089
BseRI GAGGAG 4 cut(s) 51, 54, 633, 1064
BseXI GCAGC 4 cut(s) 28, 582, 997, 1000
Bsh1236I CGCG 2 cut(s) 127, 129
BshFI GGCC 4 cut(s) 56, 99, 194, 574
BsiSI CCGG 3 cut(s) 592, 646, 1044
BslFI GGGAC 1 cut(s) 624
BslI CCNNNNNNNGG 3 cut(s) 68, 106, 370
BsmAI GTCTC 4 cut(s) 140, 642, 740, 1018
BsmBI CGTCTC 1 cut(s) 642
BsmFI GGGAC 1 cut(s) 624
BsnI GGCC 4 cut(s) 56, 99, 194, 574
Bso31I GGTCTC 2 cut(s) 740, 1018
Bsp13I TCCGGA 1 cut(s) 645
Bsp143I GATC 5 cut(s) 121, 487, 622, 871, 1111
BspACI CCGC 2 cut(s) 125, 129
BspANI GGCC 4 cut(s) 56, 99, 194, 574
BspCNI CTCAG 1 cut(s) 784
BspEI TCCGGA 1 cut(s) 645
BspFNI CGCG 2 cut(s) 127, 129
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 2 cut(s) 18, 612
BspPI GGATC 4 cut(s) 116, 482, 879, 1106
BspTI CTTAAG 2 cut(s) 188, 542
BspTNI GGTCTC 2 cut(s) 740, 1018
BsrDI GCAATG 2 cut(s) 27, 295
BsrI ACTGG 1 cut(s) 1089
BssECI CCNNGG 6 cut(s) 51, 141, 364, 938, 939, 1129
BssMI GATC 5 cut(s) 121, 487, 622, 871, 1111
BssNI GRCGYC 3 cut(s) 72, 90, 635
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 4 cut(s) 365, 615, 940, 1130
Bst4CI ACNGT 1 cut(s) 1097
Bst6I CTCTTC 1 cut(s) 878
BstACI GRCGYC 3 cut(s) 72, 90, 635
BstAFI CTTAAG 2 cut(s) 188, 542
BstBAI YACGTR 1 cut(s) 902
BstC8I GCNNGC 1 cut(s) 293
BstDEI CTNAG 4 cut(s) 241, 266, 792, 842
BstENI CCTNNNNNAGG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 642, 808
BstFNI CGCG 2 cut(s) 127, 129
BstHHI GCGC 2 cut(s) 129, 247
BstKTI GATC 5 cut(s) 124, 490, 625, 874, 1114
BstMAI GTCTC 4 cut(s) 140, 642, 740, 1018
BstMBI GATC 5 cut(s) 121, 487, 622, 871, 1111
BstMWI GCNNNNNNNGC 6 cut(s) 38, 47, 96, 200, 297, 306
BstNI CCWGG 4 cut(s) 365, 615, 940, 1130
BstNSI RCATGY 1 cut(s) 772
BstSCI CCNGG 5 cut(s) 363, 613, 938, 1042, 1128
BstSFI CTRYAG 1 cut(s) 1096
BstSNI TACGTA 1 cut(s) 902
BstUI CGCG 2 cut(s) 127, 129
BstV1I GCAGC 4 cut(s) 28, 582, 997, 1000
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BsuRI GGCC 4 cut(s) 56, 99, 194, 574
BtsCI GGATG 2 cut(s) 642, 808
Cac8I GCNNGC 1 cut(s) 293
CaiI CAGNNNCTG 2 cut(s) 923, 1095
CciI TCATGA 1 cut(s) 874
CfoI GCGC 2 cut(s) 129, 247
Cfr13I GGNCC 1 cut(s) 611
CseI GACGC 2 cut(s) 61, 79
Csp6I GTAC 1 cut(s) 789
CviAII CATG 5 cut(s) 341, 351, 449, 769, 875
CviQI GTAC 1 cut(s) 789
DdeI CTNAG 4 cut(s) 241, 266, 792, 842
DpnI GATC 5 cut(s) 123, 489, 624, 873, 1113
DpnII GATC 5 cut(s) 121, 487, 622, 871, 1111
Eam1104I CTCTTC 1 cut(s) 878
EarI CTCTTC 1 cut(s) 878
Eco105I TACGTA 1 cut(s) 902
Eco130I CCWWGG 1 cut(s) 51
Eco31I GGTCTC 2 cut(s) 740, 1018
Eco47I GGWCC 1 cut(s) 611
Eco57I CTGAAG 1 cut(s) 573
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 611
EcoRII CCWGG 4 cut(s) 363, 613, 938, 1128
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 642
FaeI CATG 5 cut(s) 344, 354, 452, 772, 878
FalI AAGNNNNNCTT 4 cut(s) 242, 274, 897, 929
FaqI GGGAC 1 cut(s) 624
FatI CATG 5 cut(s) 340, 350, 448, 768, 874
FauNDI CATATG 1 cut(s) 993
Fnu4HI GCNGC 5 cut(s) 42, 130, 596, 1011, 1014
FokI GGATG 2 cut(s) 629, 815
Fsp4HI GCNGC 5 cut(s) 42, 130, 596, 1011, 1014
FspBI CTAG 1 cut(s) 459
GlaI GCGC 2 cut(s) 128, 246
GluI GCNGC 5 cut(s) 42, 130, 596, 1011, 1014
GsuI CTGGAG 2 cut(s) 636, 1112
HaeIII GGCC 4 cut(s) 56, 99, 194, 574
HapII CCGG 3 cut(s) 592, 646, 1044
HgaI GACGC 2 cut(s) 61, 79
HhaI GCGC 2 cut(s) 129, 247
Hin1I GRCGYC 3 cut(s) 72, 90, 635
Hin1II CATG 5 cut(s) 344, 354, 452, 772, 878
Hin6I GCGC 2 cut(s) 127, 245
HinP1I GCGC 2 cut(s) 127, 245
HincII GTYRAC 2 cut(s) 633, 829
HindII GTYRAC 2 cut(s) 633, 829
HinfI GANTC 4 cut(s) 254, 538, 818, 934
HpaII CCGG 3 cut(s) 592, 646, 1044
Hpy166II GTNNAC 2 cut(s) 633, 829
Hpy188I TCNGA 6 cut(s) 178, 229, 627, 661, 715, 823
Hpy188III TCNNGA 6 cut(s) 440, 646, 761, 869, 875, 917
Hpy8I GTNNAC 2 cut(s) 633, 829
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 4 cut(s) 731, 943, 1056, 1095
HpyCH4III ACNGT 1 cut(s) 1097
HpyCH4IV ACGT 4 cut(s) 635, 683, 784, 901
HpyCH4V TGCA 5 cut(s) 405, 418, 446, 772, 863
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 47, 96, 200, 297, 306
HpyF3I CTNAG 4 cut(s) 241, 266, 792, 842
HpySE526I ACGT 4 cut(s) 635, 683, 784, 901
Hsp92I GRCGYC 3 cut(s) 72, 90, 635
Hsp92II CATG 5 cut(s) 344, 354, 452, 772, 878
HspAI GCGC 2 cut(s) 127, 245
Kpn2I TCCGGA 1 cut(s) 645
Kzo9I GATC 5 cut(s) 121, 487, 622, 871, 1111
LmnI GCTCC 2 cut(s) 474, 1069
Lsp1109I GCAGC 4 cut(s) 28, 582, 997, 1000
LweI GCATC 4 cut(s) 433, 651, 793, 910
MaeI CTAG 1 cut(s) 459
MaeII ACGT 4 cut(s) 635, 683, 784, 901
MaeIII GTNAC 2 cut(s) 343, 1091
MalI GATC 5 cut(s) 123, 489, 624, 873, 1113
MboI GATC 5 cut(s) 121, 487, 622, 871, 1111
MboII GAAGA 5 cut(s) 367, 566, 569, 892, 895
MflI RGATCY 1 cut(s) 622
MluCI AATT 4 cut(s) 172, 180, 374, 864
MmeI TCCRAC 1 cut(s) 527
MroI TCCGGA 1 cut(s) 645
MroXI GAANNNNTTC 3 cut(s) 15, 183, 671
MseI TTAA 4 cut(s) 84, 189, 543, 564
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 2 cut(s) 291, 1079
MspCI CTTAAG 2 cut(s) 188, 542
MspI CCGG 3 cut(s) 592, 646, 1044
MspR9I CCNGG 5 cut(s) 365, 615, 940, 1044, 1130
MvaI CCWGG 4 cut(s) 365, 615, 940, 1130
MvnI CGCG 2 cut(s) 127, 129
MwoI GCNNNNNNNGC 6 cut(s) 38, 47, 96, 200, 297, 306
NciI CCSGG 1 cut(s) 1044
NdeI CATATG 1 cut(s) 993
NdeII GATC 5 cut(s) 121, 487, 622, 871, 1111
NlaIII CATG 5 cut(s) 344, 354, 452, 772, 878
NlaIV GGNNCC 2 cut(s) 18, 612
NmeAIII GCCGAG 1 cut(s) 166
NspI RCATGY 1 cut(s) 772
PagI TCATGA 1 cut(s) 874
PasI CCCWGGG 1 cut(s) 939
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 108
PdmI GAANNNNTTC 3 cut(s) 15, 183, 671
PfeI GAWTC 4 cut(s) 254, 538, 818, 934
PflFI GACNNNGTC 1 cut(s) 107
PkrI GCNGC 5 cut(s) 43, 131, 597, 1012, 1015
Ppu21I YACGTR 1 cut(s) 902
PpuMI RGGWCCY 1 cut(s) 611
PsiI TTATAA 1 cut(s) 159
Psp1406I AACGTT 1 cut(s) 784
Psp5II RGGWCCY 1 cut(s) 611
Psp6I CCWGG 4 cut(s) 363, 613, 938, 1128
PspGI CCWGG 4 cut(s) 363, 613, 938, 1128
PspN4I GGNNCC 2 cut(s) 18, 612
PspPI GGNCC 1 cut(s) 611
PspPPI RGGWCCY 1 cut(s) 611
PstNI CAGNNNCTG 2 cut(s) 923, 1095
PsuI RGATCY 1 cut(s) 622
PsyI GACNNNGTC 1 cut(s) 107
PvuII CAGCTG 2 cut(s) 291, 1079
RsaI GTAC 1 cut(s) 790
RsaNI GTAC 1 cut(s) 789
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 4 cut(s) 84, 189, 543, 564
SatI GCNGC 5 cut(s) 42, 130, 596, 1011, 1014
Sau3AI GATC 5 cut(s) 121, 487, 622, 871, 1111
Sau96I GGNCC 1 cut(s) 611
ScrFI CCNGG 5 cut(s) 365, 615, 940, 1044, 1130
SfaNI GCATC 4 cut(s) 433, 651, 793, 910
SfcI CTRYAG 1 cut(s) 1096
SinI GGWCC 1 cut(s) 611
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 2 cut(s) 188, 542
SmoI CTYRAG 2 cut(s) 188, 542
SnaBI TACGTA 1 cut(s) 902
Sse9I AATT 4 cut(s) 172, 180, 374, 864
SsiI CCGC 2 cut(s) 125, 129
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 5 cut(s) 363, 613, 938, 1042, 1128
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 1097
TaiI ACGT 4 cut(s) 638, 686, 787, 904
TaqI TCGA 4 cut(s) 75, 102, 753, 1117
TasI AATT 4 cut(s) 172, 180, 374, 864
TatI WGTACW 1 cut(s) 788
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 4 cut(s) 254, 538, 818, 934
Tru1I TTAA 4 cut(s) 84, 189, 543, 564
Tru9I TTAA 4 cut(s) 84, 189, 543, 564
TseI GCWGC 4 cut(s) 41, 595, 1010, 1013
TspDTI ATGAA 3 cut(s) 202, 209, 996
TspGWI ACGGA 1 cut(s) 107
Tth111I GACNNNGTC 1 cut(s) 107
Vha464I CTTAAG 2 cut(s) 188, 542
VpaK11BI GGWCC 1 cut(s) 611
XagI CCTNNNNNAGG 1 cut(s) 104
XceI RCATGY 1 cut(s) 772
XmnI GAANNNNTTC 3 cut(s) 15, 183, 671
XspI CTAG 1 cut(s) 459
ZraI GACGTC 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.