Rorug01G0058800

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000789
Physical Location & Seq
Forward (+)
9633858 .. 9635783
1926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0058800.1

Sequence Viewer

Length: 1170 bp
ATGGTCAGATTGATTTCTTTCACTACTTTCGCTTCCAAAACCAAAAGGTATGTTGCTGGAGATCTAAAACCCTCACTCTTTTCTCTTCAAACTCATCACTTCCTCTGCACACACACCATTGTCTCTCCAAAACTAGAGCACAGTTTTACGGTGAATTACTTGATAAACTCATGTGGGTTGTCACCGGAAGGAGCAGTTTCAGCATCCAAGCGCGTCAAGTTGGGTTCCGCAGCAAGAGCAGACTCCGTTCTGGCCCATTTCAGAAACCATGGCTTCTCTGGAACCCAGATCGCACAGGTTATGAGGTCATGCCCAAAATTCCTTACTGCCGATTTTGAGAAAACCCTTTTGCCAAAGCTCGAGTATTTCAGCTCTGTTGGACTTTCAAGGCAGGACCTTGCCAGAGTTGTGTCTTCGAATCCAAATTTTTTGGGACACAGCTTGGAGAAACAGATTATACCGGTACATAAATTTATTAGGAGTTTGCTTTCTGAGCAAGATGTTATTGCAGTTTTGAAGCGTGGCTCTCGGATTTTTTCGGCTAACCAGTGTAATATTCTGGTGCCAAATATTAAGCTTTTGATAGAATTGGGTATGCCGCAATCATGCATTTCTCGGTTGCTTACTCATTGTACTAATGATGTGATTGTAAACCATGAAAAGTTTGCGAAAGCTGTGCATGAGGCCAAGGAAATGGGATTTGATATGGAAAACTCGAGATCGTTGTGGGCAATACGTGCATTGTGTAGAAAGAATAAGCTGGATCATTGTCGCCAAGTTTATATGATGAGGTGGGGTTGGTCTGAGGATGATGTTCTCTCTGCCTTCAGGATGCACCCTCCCTGTATGATTATCTCGGTGAAAAAGTTAATGCAAGTAATGGATTTTTTGGTGAACAAGATGGGATGGGCTTCGCGAATGATTGCCAAACACCCTCTGGTTTTGTCATTCAGTTTTGAGAAGAGGATAATCCCAAGGTGTTCTGTTGTTAAGGTTTTGATGTTGCGAGGGTTGAAAAACAAAAATTTGAATTTGAATTATGTTTTACAGCCTGCGGAGAAAGAATTCTTGGAGAAATTCGTGACTAAATACATTGACCGAGTACCTCAATTGCTGAGTGTGTACCAAGGGAATGTGGATATCCAAGATGCAAAAGTTTTAGTCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

389

Amino Acids

44.19

Weight (kDa)

9.75

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 85 - 238 7.5e-22 mTERF
mTERF PF02536 261 - 357 7.3e-17 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 562
AccII CGCG 2 cut(s) 213, 916
AciI CCGC 3 cut(s) 228, 599, 1055
AclWI GGATC 1 cut(s) 771
AcsI RAATTY 7 cut(s) 317, 424, 470, 1024, 1030, 1064, 1076
AcuI CTGAAG 1 cut(s) 811
AfaI GTAC 4 cut(s) 465, 634, 1104, 1124
AgeI ACCGGT 1 cut(s) 460
AgsI TTSAA 6 cut(s) 89, 387, 517, 1015, 1030, 1036
AjuI GAANNNNNNNTTGG 2 cut(s) 1052, 1084
AluBI AGCT 6 cut(s) 358, 372, 441, 577, 674, 760
AluI AGCT 6 cut(s) 358, 372, 441, 577, 674, 760
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 1 cut(s) 771
Ama87I CYCGRG 2 cut(s) 359, 715
AoxI GGCC 2 cut(s) 252, 684
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 7 cut(s) 317, 424, 470, 1024, 1030, 1064, 1076
AsiGI ACCGGT 1 cut(s) 460
Asp700I GAANNNNTTC 1 cut(s) 1064
AspLEI GCGC 1 cut(s) 213
AspS9I GGNCC 2 cut(s) 253, 394
AsuHPI GGTGA 4 cut(s) 163, 174, 871, 904
AsuII TTCGAA 1 cut(s) 416
AvaI CYCGRG 2 cut(s) 359, 715
AvaII GGWCC 1 cut(s) 394
BanI GGYRCC 1 cut(s) 562
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 242
BccI CCATC 2 cut(s) 895, 900
BcgI CGANNNNNNTGC 2 cut(s) 658, 692
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 1 cut(s) 134
BglII AGATCT 1 cut(s) 61
BisI GCNGC 2 cut(s) 231, 599
BlsI GCNGC 2 cut(s) 232, 600
Bme18I GGWCC 1 cut(s) 394
BmeT110I CYCGRG 2 cut(s) 359, 715
BmgT120I GGNCC 2 cut(s) 253, 394
BmiI GGNNCC 3 cut(s) 226, 283, 564
BmsI GCATC 3 cut(s) 212, 822, 1138
BpiI GAAGAC 1 cut(s) 405
BpmI CTGGAG 1 cut(s) 78
Bpu14I TTCGAA 1 cut(s) 416
BsaAI YACGTR 1 cut(s) 737
BsaJI CCNNGG 4 cut(s) 268, 687, 974, 1126
BsaWI WCCGGW 2 cut(s) 184, 460
Bse118I RCCGGY 1 cut(s) 460
Bse1I ACTGG 1 cut(s) 547
BseDI CCNNGG 4 cut(s) 268, 687, 974, 1126
BseGI GGATG 4 cut(s) 203, 814, 837, 911
BseMII CTCAG 3 cut(s) 483, 795, 1106
BseNI ACTGG 1 cut(s) 547
BseXI GCAGC 1 cut(s) 242
BsgI GTGCAG 1 cut(s) 91
Bsh1236I CGCG 2 cut(s) 213, 916
BshFI GGCC 2 cut(s) 254, 686
BshNI GGYRCC 1 cut(s) 562
BshTI ACCGGT 1 cut(s) 460
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 2 cut(s) 359, 715
BsiSI CCGG 2 cut(s) 185, 461
BslFI GGGAC 2 cut(s) 447, 1148
BsmAI GTCTC 1 cut(s) 127
BsmFI GGGAC 2 cut(s) 447, 1148
BsnI GGCC 2 cut(s) 254, 686
BsoBI CYCGRG 2 cut(s) 359, 715
Bsp119I TTCGAA 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 4 cut(s) 61, 288, 719, 763
Bsp19I CCATGG 1 cut(s) 268
Bsp68I TCGCGA 1 cut(s) 916
BspACI CCGC 3 cut(s) 228, 599, 1055
BspANI GGCC 2 cut(s) 254, 686
BspCNI CTCAG 3 cut(s) 484, 796, 1107
BspFNI CGCG 2 cut(s) 213, 916
BspLI GGNNCC 3 cut(s) 226, 283, 564
BspPI GGATC 1 cut(s) 771
BspT104I TTCGAA 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 562
BsrFI RCCGGY 1 cut(s) 460
BsrI ACTGG 1 cut(s) 547
BssAI RCCGGY 1 cut(s) 460
BssECI CCNNGG 4 cut(s) 268, 687, 974, 1126
BssMI GATC 4 cut(s) 61, 288, 719, 763
BssT1I CCWWGG 4 cut(s) 268, 687, 974, 1126
Bst4CI ACNGT 2 cut(s) 143, 151
Bst6I CTCTTC 2 cut(s) 90, 956
BstAPI GCANNNNNTGC 1 cut(s) 737
BstBAI YACGTR 1 cut(s) 737
BstBI TTCGAA 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 1053
BstDEI CTNAG 3 cut(s) 492, 804, 1115
BstDSI CCRYGG 1 cut(s) 268
BstF5I GGATG 4 cut(s) 203, 814, 837, 911
BstFNI CGCG 2 cut(s) 213, 916
BstHHI GCGC 1 cut(s) 213
BstKTI GATC 4 cut(s) 64, 291, 722, 766
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 4 cut(s) 61, 288, 719, 763
BstMWI GCNNNNNNNGC 4 cut(s) 200, 236, 493, 737
BstUI CGCG 2 cut(s) 213, 916
BstV1I GCAGC 1 cut(s) 242
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 694
BstYI RGATCY 1 cut(s) 61
BsuRI GGCC 2 cut(s) 254, 686
BtgI CCRYGG 1 cut(s) 268
BtsCI GGATG 4 cut(s) 203, 814, 837, 911
BtsIMutI CAGTG 1 cut(s) 554
BtuMI TCGCGA 1 cut(s) 916
Cac8I GCNNGC 1 cut(s) 1053
CfoI GCGC 1 cut(s) 213
Cfr10I RCCGGY 1 cut(s) 460
Cfr13I GGNCC 2 cut(s) 253, 394
CseI GACGC 1 cut(s) 202
Csp6I GTAC 4 cut(s) 464, 633, 1103, 1123
CspAI ACCGGT 1 cut(s) 460
CviAII CATG 6 cut(s) 171, 269, 309, 606, 656, 680
CviQI GTAC 4 cut(s) 464, 633, 1103, 1123
DdeI CTNAG 3 cut(s) 492, 804, 1115
DpnI GATC 4 cut(s) 63, 290, 721, 765
DpnII GATC 4 cut(s) 61, 288, 719, 763
Eam1104I CTCTTC 2 cut(s) 90, 956
EarI CTCTTC 2 cut(s) 90, 956
Eco130I CCWWGG 4 cut(s) 268, 687, 974, 1126
Eco32I GATATC 1 cut(s) 1141
Eco47I GGWCC 1 cut(s) 394
Eco57I CTGAAG 1 cut(s) 811
Eco88I CYCGRG 2 cut(s) 359, 715
EcoO109I RGGNCCY 1 cut(s) 394
EcoRI GAATTC 1 cut(s) 1064
EcoRV GATATC 1 cut(s) 1141
EcoT14I CCWWGG 4 cut(s) 268, 687, 974, 1126
EcoT22I ATGCAT 1 cut(s) 611
ErhI CCWWGG 4 cut(s) 268, 687, 974, 1126
FaeI CATG 6 cut(s) 174, 272, 312, 609, 659, 683
FaqI GGGAC 2 cut(s) 447, 1148
FatI CATG 6 cut(s) 170, 268, 308, 605, 655, 679
Fnu4HI GCNGC 2 cut(s) 231, 599
FokI GGATG 4 cut(s) 190, 821, 844, 918
Fsp4HI GCNGC 2 cut(s) 231, 599
FspBI CTAG 1 cut(s) 134
GlaI GCGC 1 cut(s) 212
GluI GCNGC 2 cut(s) 231, 599
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 2 cut(s) 254, 686
HapII CCGG 2 cut(s) 185, 461
HgaI GACGC 1 cut(s) 202
HhaI GCGC 1 cut(s) 213
Hin1II CATG 6 cut(s) 174, 272, 312, 609, 659, 683
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 2 cut(s) 242, 418
HpaII CCGG 2 cut(s) 185, 461
HphI GGTGA 4 cut(s) 163, 174, 871, 904
Hpy166II GTNNAC 3 cut(s) 652, 895, 1123
Hpy188I TCNGA 5 cut(s) 8, 263, 493, 531, 805
Hpy188III TCNNGA 5 cut(s) 279, 717, 829, 915, 1081
Hpy8I GTNNAC 3 cut(s) 652, 895, 1123
HpyAV CCTTC 2 cut(s) 182, 835
HpyCH4III ACNGT 2 cut(s) 143, 151
HpyCH4IV ACGT 1 cut(s) 736
HpyCH4V TGCA 8 cut(s) 108, 509, 609, 679, 740, 835, 874, 1151
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 236, 493, 737
HpyF3I CTNAG 3 cut(s) 492, 804, 1115
HpySE526I ACGT 1 cut(s) 736
Hsp92II CATG 6 cut(s) 174, 272, 312, 609, 659, 683
HspAI GCGC 1 cut(s) 211
Kzo9I GATC 4 cut(s) 61, 288, 719, 763
LmnI GCTCC 1 cut(s) 191
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 3 cut(s) 212, 822, 1138
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 736
MaeIII GTNAC 2 cut(s) 180, 1081
MalI GATC 4 cut(s) 63, 290, 721, 765
MboI GATC 4 cut(s) 61, 288, 719, 763
MboII GAAGA 3 cut(s) 77, 405, 973
MfeI CAATTG 1 cut(s) 1109
MflI RGATCY 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 141
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 358
Mph1103I ATGCAT 1 cut(s) 611
MroXI GAANNNNTTC 1 cut(s) 1064
MseI TTAA 3 cut(s) 573, 869, 990
MspI CCGG 2 cut(s) 185, 461
MunI CAATTG 1 cut(s) 1109
MvnI CGCG 2 cut(s) 213, 916
MwoI GCNNNNNNNGC 4 cut(s) 200, 236, 493, 737
NcoI CCATGG 1 cut(s) 268
NdeII GATC 4 cut(s) 61, 288, 719, 763
NlaIII CATG 6 cut(s) 174, 272, 312, 609, 659, 683
NlaIV GGNNCC 3 cut(s) 226, 283, 564
NmuCI GTSAC 2 cut(s) 180, 1081
NruI TCGCGA 1 cut(s) 916
NsiI ATGCAT 1 cut(s) 611
NspV TTCGAA 1 cut(s) 416
PaeR7I CTCGAG 2 cut(s) 359, 715
PdmI GAANNNNTTC 1 cut(s) 1064
PfeI GAWTC 1 cut(s) 418
PinAI ACCGGT 1 cut(s) 460
PkrI GCNGC 2 cut(s) 232, 600
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
Ppu21I YACGTR 1 cut(s) 737
PpuMI RGGWCCY 1 cut(s) 394
Psp5II RGGWCCY 1 cut(s) 394
PspN4I GGNNCC 3 cut(s) 226, 283, 564
PspPI GGNCC 2 cut(s) 253, 394
PspPPI RGGWCCY 1 cut(s) 394
PspXI VCTCGAGB 1 cut(s) 359
PsuI RGATCY 1 cut(s) 61
RruI TCGCGA 1 cut(s) 916
RsaI GTAC 4 cut(s) 465, 634, 1104, 1124
RsaNI GTAC 4 cut(s) 464, 633, 1103, 1123
SaqAI TTAA 3 cut(s) 573, 869, 990
SatI GCNGC 2 cut(s) 231, 599
Sau3AI GATC 4 cut(s) 61, 288, 719, 763
Sau96I GGNCC 2 cut(s) 253, 394
SchI GAGTC 1 cut(s) 236
SduI GDGCHC 1 cut(s) 141
SfaNI GCATC 3 cut(s) 212, 822, 1138
Sfr274I CTCGAG 2 cut(s) 359, 715
SfuI TTCGAA 1 cut(s) 416
SinI GGWCC 1 cut(s) 394
SlaI CTCGAG 2 cut(s) 359, 715
SmlI CTYRAG 2 cut(s) 359, 715
SmoI CTYRAG 2 cut(s) 359, 715
SsiI CCGC 3 cut(s) 228, 599, 1055
SspI AATATT 2 cut(s) 556, 571
SspMI CTAG 1 cut(s) 134
StyI CCWWGG 4 cut(s) 268, 687, 974, 1126
TaaI ACNGT 2 cut(s) 143, 151
TaiI ACGT 1 cut(s) 739
TaqI TCGA 3 cut(s) 360, 416, 716
TaqII GACCGA 1 cut(s) 1113
TatI WGTACW 1 cut(s) 632
TauI GCSGC 1 cut(s) 601
TfiI GAWTC 1 cut(s) 418
Tru1I TTAA 3 cut(s) 573, 869, 990
Tru9I TTAA 3 cut(s) 573, 869, 990
TscAI CASTG 1 cut(s) 554
TseFI GTSAC 2 cut(s) 180, 1081
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 2 cut(s) 180, 1081
TspDTI ATGAA 1 cut(s) 672
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 1 cut(s) 554
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 7 cut(s) 317, 424, 470, 1024, 1030, 1064, 1076
XcmI CCANNNNNNNNNTGG 2 cut(s) 275, 934
XhoI CTCGAG 2 cut(s) 359, 715
XmnI GAANNNNTTC 1 cut(s) 1064
XspI CTAG 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.