RchiOBHm_Chr5g0018411

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000789
Physical Location & Seq
Reverse (-)
12973276 .. 12974295
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29862

Sequence Viewer

Length: 372 bp
ATGGATCATGAGAAGAACAGAACATTTGTAATACGCAAAGATGGTCTCCCAGATGCCGTGGTGTGGAATCCTTGGGATAAGAAGGCAAAGGCTATGGCTGATTTTGGACATAATGAGTACAAACATATGCTTTCTGTGGAGGCTGCTGCTATTGAGAGACCTATCACATTGAAACCTGGAGACGAGTGGAAAGGGCGGCAGGAACAAAGTGCGAAAGGATTGCTTTTTGCACCTTTATTTTTTGGTTTTACACTATTCCTTATCGAAATGATAACGTTTAGAATTGGTTCCCTTGAAACTATTATTTACCATTTATGTATATGTAAATCATATAGATTATTTTGGACTGGTTTAGAAGTATATCTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

123

Amino Acids

14.32

Weight (kDa)

7.79

Isoelectric Point (pI)

26.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 2 - 68 3.7e-12 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 196
AclI AACGTT 1 cut(s) 275
AclWI GGATC 1 cut(s) 12
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 2 cut(s) 172, 296
AjnI CCWGG 1 cut(s) 175
Alw26I GTCTC 3 cut(s) 50, 151, 174
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 143, 146
Asp700I GAANNNNTTC 1 cut(s) 286
BbvI GCAGC 2 cut(s) 130, 133
BccI CCATC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 41
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 1 cut(s) 177
BcoDI GTCTC 3 cut(s) 50, 151, 174
BisI GCNGC 3 cut(s) 144, 147, 197
BlsI GCNGC 3 cut(s) 145, 148, 198
Bme1390I CCNGG 1 cut(s) 177
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 198
BsaI GGTCTC 2 cut(s) 50, 151
BsaJI CCNNGG 2 cut(s) 57, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 352
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 57, 71
BseLI CCNNNNNNNGG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 352
BseXI GCAGC 2 cut(s) 130, 133
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 3 cut(s) 50, 151, 174
BsmBI CGTCTC 1 cut(s) 174
Bso31I GGTCTC 2 cut(s) 50, 151
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 1 cut(s) 196
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 2 cut(s) 50, 151
BsrI ACTGG 1 cut(s) 352
BssECI CCNNGG 2 cut(s) 57, 71
BssMI GATC 1 cut(s) 4
BssT1I CCWWGG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 57
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 3 cut(s) 50, 151, 174
BstMBI GATC 1 cut(s) 4
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 175
BstV1I GCAGC 2 cut(s) 130, 133
BtgI CCRYGG 1 cut(s) 57
CciI TCATGA 1 cut(s) 7
Csp6I GTAC 1 cut(s) 118
CviAII CATG 1 cut(s) 8
CviJI RGCY 3 cut(s) 92, 98, 143
CviKI_1 RGCY 3 cut(s) 92, 98, 143
CviQI GTAC 1 cut(s) 118
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eco130I CCWWGG 1 cut(s) 71
Eco31I GGTCTC 2 cut(s) 50, 151
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 1 cut(s) 11
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 1 cut(s) 7
FauNDI CATATG 1 cut(s) 126
Fnu4HI GCNGC 3 cut(s) 144, 147, 197
Fsp4HI GCNGC 3 cut(s) 144, 147, 197
GluI GCNGC 3 cut(s) 144, 147, 197
GsuI CTGGAG 1 cut(s) 198
Hin1II CATG 1 cut(s) 11
HinfI GANTC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 366
Hpy188III TCNNGA 1 cut(s) 8
HpyAV CCTTC 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 1 cut(s) 230
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 1 cut(s) 11
Kzo9I GATC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 63, 162, 185, 189, 333
Lsp1109I GCAGC 2 cut(s) 130, 133
LweI GCATC 1 cut(s) 43
MaeII ACGT 1 cut(s) 275
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 1 cut(s) 25
MluCI AATT 1 cut(s) 282
MnlI CCTC 1 cut(s) 133
MroXI GAANNNNTTC 1 cut(s) 286
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
NdeI CATATG 1 cut(s) 126
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 1 cut(s) 289
PagI TCATGA 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 3 cut(s) 145, 148, 198
Psp1406I AACGTT 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 289
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SatI GCNGC 3 cut(s) 144, 147, 197
Sau3AI GATC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 177
SetI ASST 4 cut(s) 163, 178, 235, 278
SfaNI GCATC 1 cut(s) 43
Sse9I AATT 1 cut(s) 282
SsiI CCGC 1 cut(s) 196
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 1 cut(s) 71
TaiI ACGT 1 cut(s) 278
TaqI TCGA 1 cut(s) 264
TasI AATT 1 cut(s) 282
TatI WGTACW 1 cut(s) 117
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 1 cut(s) 67
TseI GCWGC 2 cut(s) 143, 146
XmnI GAANNNNTTC 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.