Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000789

Physical Location & Seq

Genomic Coordinates Forward (+)

40471681 .. 40478782

Gene Structure 7102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034317

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCTCCAAATCCGGTCTTGCAGGTTGGTCGCAGGAATCTGTTTAGGAGCAGTGAGCTCCTTCACCGCTGATCTGACAGGATCTGAACATAGCAAAGCAGGAACCCAATCTGGGTTTAAGTCCAGTGGTGTTTTGGGTCGAAGATGTCGTCCAGAGCCGGATATTGTGATACCCATTGTGTCCGACTCGGACTCTGACTCAAATCTTCTCCTCTGCTCCTATTGCCTTCTTGACCGCTCCTATTGGTTAGCTGGAGACGACGAAGAAGGATCGACAAATAAACGATTGGCTTTTCGTATTTCTGGGTCTGGGACTTCATCCCAATGTCTGTGTTTTCAGAGTCGTCAAAAGACGTTAAATATACAACCAGAGGTCGCAAAGAAAAATCTCACATTTATTCCTCTAGCACCAGCCTGTGTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006935 GO:0007275 GO:0008104 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0010183 GO:0012505 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045185 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0072595

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF747

Protein Analysis

142

Amino Acids

15.15

Weight (kDa)

8.14

Isoelectric Point (pI)

61.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57330
fragaria_vesca	FvH4_4g07740 FvH4_4g07740 FvH4_4g07740 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010
malus_domestica	MD05G1327600.v1.1 MD09G1230300.v1.1 MD13G1246400.v1.1 MD16G1253800.v1.1 MD17G1229200.v1.1
prunus_persica	Prupe.1G081500_v2.0.a1 Prupe.1G081500_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G292800_v2.0.a1
pyrus_communis	pycom09g14950 pycom13g21740 pycom13g21750 pycom14g13110 pycom16g21500 pycom17g23160
rosa_chinensis	RchiOBHm_Chr3g0475991 RchiOBHm_Chr4g0400811 RchiOBHm_Chr5g0018411
rosa_laevigata	RLG00000009179 RLG00000021107 RLG00000032141 RLG00000032366 RLG00000034317
rosa_multiflora	Rmu_sc0002141.1_g000020 Rmu_sc0004591.1_g000012 Rmu_sc0040059.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033540 Rroxscaffold_1G00059320 Rroxscaffold_2G00112700 Rroxscaffold_4G00322360 Rroxscaffold_5G00345630 Rroxscaffold_5G00348000
rosa_rugosa	Rorug01G0058800 Rorug02G0299000 Rorug02G0299100 Rorug04G0026000 Rorug05G0043600 Rorug06G0305200
rosa_samantha	Rh1AG113800 Rh1AG183300 Rh3BG233300 Rh4AG103900 Rh4BG098800 Rh4CG112100 Rh4DG095700 Rh6AG047200 Rh6AG174700 Rh6BG293500 Rh6BG425100
rosa_wichuraiana	Rw4G008400 Rw4G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	12
AccBSI	CCGCTC	1 cut(s)	237
AciI	CCGC	2 cut(s)	66, 235
AclWI	GGATC	2 cut(s)	88, 277
AfiI	CCNNNNNNNGG	1 cut(s)	111
AluBI	AGCT	2 cut(s)	57, 251
AluI	AGCT	2 cut(s)	57, 251
Alw21I	GWGCWC	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	88, 277
AlwNI	CAGNNNCTG	1 cut(s)	83
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
AsuHPI	GGTGA	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	59
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	404
BfuAI	ACCTGC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	317
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	13, 158
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	249
BsmBI	CGTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	3 cut(s)	70, 80, 269
BspACI	CCGC	2 cut(s)	66, 235
BspLI	GGNNCC	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	12
BspPI	GGATC	2 cut(s)	88, 277
BsrBI	CCGCTC	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	123
BssMI	GATC	3 cut(s)	70, 80, 269
BstF5I	GGATG	1 cut(s)	317
BstKTI	GATC	3 cut(s)	73, 83, 272
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	3 cut(s)	70, 80, 269
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	317
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	57, 130
BveI	ACCTGC	1 cut(s)	12
CaiI	CAGNNNCTG	1 cut(s)	83
CviJI	RGCY	5 cut(s)	57, 157, 251, 290, 413
CviKI_1	RGCY	5 cut(s)	57, 157, 251, 290, 413
DpnI	GATC	3 cut(s)	72, 82, 271
DpnII	GATC	3 cut(s)	70, 80, 269
Ecl136II	GAGCTC	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	59
Esp3I	CGTCTC	1 cut(s)	249
FaiI	YATR	2 cut(s)	90, 362
FaqI	GGGAC	1 cut(s)	325
FokI	GGATG	1 cut(s)	304
FriOI	GRGCYC	1 cut(s)	59
FspBI	CTAG	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	273
HapII	CCGG	2 cut(s)	13, 158
HinfI	GANTC	5 cut(s)	36, 185, 191, 197, 340
HpaII	CCGG	2 cut(s)	13, 158
HphI	GGTGA	1 cut(s)	55
Hpy188I	TCNGA	6 cut(s)	75, 85, 184, 190, 196, 339
Hpy188III	TCNNGA	2 cut(s)	152, 230
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	3 cut(s)	70, 236, 260
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	353
Kzo9I	GATC	3 cut(s)	70, 80, 269
LmnI	GCTCC	5 cut(s)	9, 47, 62, 221, 242
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	1 cut(s)	353
MalI	GATC	3 cut(s)	72, 82, 271
MbiI	CCGCTC	1 cut(s)	237
MboI	GATC	3 cut(s)	70, 80, 269
MboII	GAAGA	3 cut(s)	153, 197, 275
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	59
MlyI	GAGTC	4 cut(s)	179, 185, 191, 349
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	3 cut(s)	221, 364, 411
MseI	TTAA	2 cut(s)	117, 356
MslI	CAYNNNNRTG	1 cut(s)	322
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	2 cut(s)	13, 158
MwoI	GCNNNNNNNGC	1 cut(s)	222
NdeII	GATC	3 cut(s)	70, 80, 269
NlaIV	GGNNCC	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	36
PleI	GAGTC	4 cut(s)	179, 185, 191, 348
PpsI	GAGTC	4 cut(s)	179, 185, 191, 348
Psp124BI	GAGCTC	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	117, 356
Sau3AI	GATC	3 cut(s)	70, 80, 269
SchI	GAGTC	4 cut(s)	179, 185, 191, 349
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	5 cut(s)	26, 59, 253, 356, 375
SmiMI	CAYNNNNRTG	1 cut(s)	322
SsiI	CCGC	2 cut(s)	66, 235
SspMI	CTAG	1 cut(s)	404
SstI	GAGCTC	1 cut(s)	59
TaiI	ACGT	1 cut(s)	356
TaqI	TCGA	2 cut(s)	139, 272
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	2 cut(s)	117, 356
Tru9I	TTAA	2 cut(s)	117, 356
TscAI	CASTG	2 cut(s)	57, 130
TspDTI	ATGAA	1 cut(s)	306
TspRI	CASTG	2 cut(s)	57, 130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.