RchiOBHm_Chr3g0475991

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000789
Physical Location & Seq
Forward (+)
21921717 .. 21924414
2698 bp
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UTR
Exon/CDS
Intron
PRQ44144

Sequence Viewer

Length: 147 bp
ATGTCTGTGTTTTCAGAGTCGTCAAAAGTTGTAATCACGAACGTGATTGGCCTAATTTGGGGTCCTATTACGACGGAATGGATTCAAGTGGAGAATGTGGTGTGCTTGCTGAGACCATGTTTTACATTCCAGCAAAAACTGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

48

Amino Acids

5.44

Weight (kDa)

5.98

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 1 cut(s) 86
AleI CACNNNNGTG 1 cut(s) 41
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 106
AoxI GGCC 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 62
AvaII GGWCC 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 101, 131
BshFI GGCC 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 106
BsnI GGCC 1 cut(s) 51
Bso31I GGTCTC 1 cut(s) 106
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 2 cut(s) 102, 132
BspLI GGNNCC 1 cut(s) 63
BspTNI GGTCTC 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 2 cut(s) 110, 140
BstMAI GTCTC 1 cut(s) 106
BsuRI GGCC 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 62
CviAII CATG 1 cut(s) 117
CviJI RGCY 2 cut(s) 51, 144
CviKI_1 RGCY 2 cut(s) 51, 144
DdeI CTNAG 2 cut(s) 110, 140
Eco31I GGTCTC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 62
FaeI CATG 1 cut(s) 120
FaiI YATR 1 cut(s) 118
FatI CATG 1 cut(s) 116
HaeIII GGCC 1 cut(s) 51
Hin1II CATG 1 cut(s) 120
HinfI GANTC 2 cut(s) 17, 82
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 42
HpyF3I CTNAG 2 cut(s) 110, 140
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 1 cut(s) 120
LpnPI CCDG 1 cut(s) 143
MaeII ACGT 1 cut(s) 42
MluCI AATT 1 cut(s) 54
MlyI GAGTC 1 cut(s) 26
MroXI GAANNNNTTC 1 cut(s) 81
MslI CAYNNNNRTG 1 cut(s) 41
NlaIII CATG 1 cut(s) 120
NlaIV GGNNCC 1 cut(s) 63
OliI CACNNNNGTG 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 82
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PpuMI RGGWCCY 1 cut(s) 62
Psp5II RGGWCCY 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 62
PspPPI RGGWCCY 1 cut(s) 62
RseI CAYNNNNRTG 1 cut(s) 41
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 1 cut(s) 26
SetI ASST 2 cut(s) 45, 146
SgeI CNNG 6 cut(s) 49, 55, 98, 118, 129, 142
SinI GGWCC 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 1 cut(s) 54
TaiI ACGT 1 cut(s) 45
TasI AATT 1 cut(s) 54
TfiI GAWTC 1 cut(s) 82
TspGWI ACGGA 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.