pycom13g21750

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000789
Physical Location & Seq
Forward (+)
18682596 .. 18685176
2581 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g21750.6

Sequence Viewer

Length: 687 bp
ATGAAGACCTGGCCTCACAGTTATGAGTTCCGGCTGCGGGTAGCTTTGGGACCCGGAGGAGATCTGACATTGATATCCCGCATCAGGAATACCAACACCGATGGGAAGCCATTCACATTCACATTTGCATATCACACTTACTTCGCTGTTTCAGATATCAGTGAAGTTCGCGTAGAAGGATTGGAAACCTTGGATTATCTTGACAACTTGCAGAGCAGGAAACGTTGCACTGAACAAGGCGATGCTATAACATTTGAGTCAGAGGTGGACAAGATATATCTGAGCACTCCTACAAAGATTGCAATTCTGGATCATGAGAAGAAGAGAACATTTGTAATACGCAAAGATGGTCTTCCAGATGCTGTTGTATGGAATCCCTGGGATAAGAAGGCGAAGGCTTTGACTGACTTTGGAGATGATGAATACAAGCATATGCTGTGTGTGGAGGCTGCTGCTATTGAGAAACCTATAACATTGAAACCTGGAGAGGAGTGGAGAGGAAGGCAGGAGCTTTCAGCTGTTCCTTCCAGTTACTGCAGCGGGCAACTTGATCCCCGAAAGGTTCTTCAGGGAAGCGAACTAATTGTATCTGCTTCTATTTTTCTCTCCTATGAATTGTTAGTAAGCAAAACGAAGGGGAAATTGACTACTAATAGTTCTTTTCAAAGGAGGCAGCCAAACCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

229

Amino Acids

25.9

Weight (kDa)

7.68

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 171
AciI CCGC 3 cut(s) 37, 79, 540
AclI AACGTT 1 cut(s) 223
AclWI GGATC 2 cut(s) 318, 545
AcuI CTGAAG 1 cut(s) 551
AfiI CCNNNNNNNGG 2 cut(s) 37, 84
AgsI TTSAA 2 cut(s) 478, 665
AjnI CCWGG 3 cut(s) 8, 377, 481
AluBI AGCT 3 cut(s) 44, 511, 518
AluI AGCT 3 cut(s) 44, 511, 518
Alw21I GWGCWC 1 cut(s) 287
AlwI GGATC 2 cut(s) 318, 545
AlwNI CAGNNNCTG 2 cut(s) 362, 534
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 5 cut(s) 34, 449, 452, 537, 673
Asp700I GAANNNNTTC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 1 cut(s) 54
AvaII GGWCC 1 cut(s) 50
BbsI GAAGAC 2 cut(s) 11, 344
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 4 cut(s) 21, 436, 439, 549
BccI CCATC 2 cut(s) 95, 341
BciT130I CCWGG 3 cut(s) 10, 379, 483
BcnI CCSGG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 535
BglII AGATCT 1 cut(s) 61
BisI GCNGC 5 cut(s) 35, 450, 453, 538, 674
BlsI GCNGC 5 cut(s) 36, 451, 454, 539, 675
Bme1390I CCNGG 4 cut(s) 10, 54, 379, 483
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 2 cut(s) 51, 52
BmrFI CCNGG 4 cut(s) 10, 54, 379, 483
BmsI GCATC 3 cut(s) 90, 232, 349
BpiI GAAGAC 2 cut(s) 11, 344
BpmI CTGGAG 1 cut(s) 504
BpuMI CCSGG 1 cut(s) 54
BsaJI CCNNGG 3 cut(s) 189, 377, 378
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 84
Bse1I ACTGG 1 cut(s) 528
BseBI CCWGG 3 cut(s) 10, 379, 483
BseDI CCNNGG 3 cut(s) 189, 377, 378
BseLI CCNNNNNNNGG 2 cut(s) 37, 84
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 528
BseRI GAGGAG 2 cut(s) 72, 503
BseXI GCAGC 4 cut(s) 21, 436, 439, 549
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 2 cut(s) 31, 54
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 37, 84
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 3 cut(s) 61, 310, 550
BspACI CCGC 3 cut(s) 37, 79, 540
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 273
BspFNI CGCG 1 cut(s) 171
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 51, 52
BspMAI CTGCAG 1 cut(s) 539
BspPI GGATC 2 cut(s) 318, 545
BsrI ACTGG 1 cut(s) 528
BssECI CCNNGG 3 cut(s) 189, 377, 378
BssMI GATC 3 cut(s) 61, 310, 550
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 3 cut(s) 10, 379, 483
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 542
BstDEI CTNAG 1 cut(s) 281
BstFNI CGCG 1 cut(s) 171
BstKTI GATC 3 cut(s) 64, 313, 553
BstMBI GATC 3 cut(s) 61, 310, 550
BstNI CCWGG 3 cut(s) 10, 379, 483
BstSCI CCNGG 4 cut(s) 8, 52, 377, 481
BstSFI CTRYAG 1 cut(s) 535
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 4 cut(s) 21, 436, 439, 549
BstV2I GAAGAC 2 cut(s) 11, 344
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BsuRI GGCC 1 cut(s) 13
BtgZI GCGATG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 166, 228
Cac8I GCNNGC 1 cut(s) 542
CaiI CAGNNNCTG 2 cut(s) 362, 534
CciI TCATGA 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 50
CviAII CATG 1 cut(s) 314
CviJI RGCY 9 cut(s) 13, 34, 44, 109, 398, 449, 511, 518, 676
CviKI_1 RGCY 9 cut(s) 13, 34, 44, 109, 398, 449, 511, 518, 676
DdeI CTNAG 1 cut(s) 281
DpnI GATC 3 cut(s) 63, 312, 552
DpnII GATC 3 cut(s) 61, 310, 550
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 189
Eco32I GATATC 2 cut(s) 75, 157
Eco47I GGWCC 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 551
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 3 cut(s) 8, 377, 481
EcoRV GATATC 2 cut(s) 75, 157
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 1 cut(s) 317
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FaqI GGGAC 1 cut(s) 63
FatI CATG 1 cut(s) 313
FauI CCCGC 3 cut(s) 30, 86, 533
FauNDI CATATG 1 cut(s) 432
Fnu4HI GCNGC 5 cut(s) 35, 450, 453, 538, 674
Fsp4HI GCNGC 5 cut(s) 35, 450, 453, 538, 674
GluI GCNGC 5 cut(s) 35, 450, 453, 538, 674
GsuI CTGGAG 1 cut(s) 504
HaeIII GGCC 1 cut(s) 13
HapII CCGG 2 cut(s) 31, 54
Hin1II CATG 1 cut(s) 317
HinfI GANTC 2 cut(s) 257, 373
HpaII CCGG 2 cut(s) 31, 54
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 4 cut(s) 66, 154, 262, 282
Hpy188III TCNNGA 5 cut(s) 85, 200, 308, 314, 356
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 6 cut(s) 170, 382, 388, 495, 534, 628
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 5 cut(s) 128, 211, 228, 302, 537
HpyF3I CTNAG 1 cut(s) 281
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 1 cut(s) 317
KflI GGGWCCC 1 cut(s) 50
Kzo9I GATC 3 cut(s) 61, 310, 550
LmnI GCTCC 1 cut(s) 508
Lsp1109I GCAGC 4 cut(s) 21, 436, 439, 549
LweI GCATC 3 cut(s) 90, 232, 349
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 530
MalI GATC 3 cut(s) 63, 312, 552
MboI GATC 3 cut(s) 61, 310, 550
MboII GAAGA 5 cut(s) 16, 331, 334, 344, 557
MflI RGATCY 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 4 cut(s) 303, 582, 614, 641
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 7 cut(s) 24, 50, 256, 439, 481, 491, 663
MroXI GAANNNNTTC 1 cut(s) 110
MslI CAYNNNNRTG 1 cut(s) 21
MspA1I CMGCKG 2 cut(s) 518, 540
MspI CCGG 2 cut(s) 31, 54
MspR9I CCNGG 4 cut(s) 10, 54, 379, 483
MvaI CCWGG 3 cut(s) 10, 379, 483
MvnI CGCG 1 cut(s) 171
NciI CCSGG 1 cut(s) 54
NdeI CATATG 1 cut(s) 432
NdeII GATC 3 cut(s) 61, 310, 550
NlaIII CATG 1 cut(s) 317
NlaIV GGNNCC 2 cut(s) 51, 52
PagI TCATGA 1 cut(s) 313
PasI CCCWGGG 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 110
PfeI GAWTC 1 cut(s) 373
PkrI GCNGC 5 cut(s) 36, 451, 454, 539, 675
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 50
Psp1406I AACGTT 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 3 cut(s) 8, 377, 481
PspGI CCWGG 3 cut(s) 8, 377, 481
PspN4I GGNNCC 2 cut(s) 51, 52
PspPI GGNCC 1 cut(s) 50
PspPPI RGGWCCY 1 cut(s) 50
PstI CTGCAG 1 cut(s) 539
PstNI CAGNNNCTG 2 cut(s) 362, 534
PsuI RGATCY 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 518
RseI CAYNNNNRTG 1 cut(s) 21
SatI GCNGC 5 cut(s) 35, 450, 453, 538, 674
Sau3AI GATC 3 cut(s) 61, 310, 550
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 4 cut(s) 10, 54, 379, 483
SduI GDGCHC 1 cut(s) 287
SfaNI GCATC 3 cut(s) 90, 232, 349
SfcI CTRYAG 1 cut(s) 535
SinI GGWCC 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 21
Sse9I AATT 4 cut(s) 303, 582, 614, 641
SsiI CCGC 3 cut(s) 37, 79, 540
StyD4I CCNGG 4 cut(s) 8, 52, 377, 481
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 1 cut(s) 226
TasI AATT 4 cut(s) 303, 582, 614, 641
TfiI GAWTC 1 cut(s) 373
TscAI CASTG 2 cut(s) 166, 235
TseI GCWGC 5 cut(s) 34, 449, 452, 537, 673
TspDTI ATGAA 3 cut(s) 17, 435, 627
TspRI CASTG 2 cut(s) 166, 235
VpaK11BI GGWCC 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.