Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000789

Physical Location & Seq

Genomic Coordinates Forward (+)

19840855 .. 19845304

Gene Structure 4450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGGGTTTGCTGGAGACGACGAAGAAGGATCGACAAATAAACGATTGGCTCTTTGTATTTCTGGGTCTTGGACTTCATCCCAATGTTTGTGTTTTCAGAGTTGTCAGAAGACTTTAAATATAGATACAACCAGAGGCCGCAAAGAAAAATCTCACATTTATTCCTCTAGCACCAGCTTGTGTGATTCTGGATTTGCAAATGTAGATTGTGGAATTCCTTCAGTGTTGAAGTATGATTGGAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

82

Amino Acids

8.98

Weight (kDa)

6.52

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57330
fragaria_vesca	FvH4_4g07740 FvH4_4g07740 FvH4_4g07740 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010
malus_domestica	MD05G1327600.v1.1 MD09G1230300.v1.1 MD13G1246400.v1.1 MD16G1253800.v1.1 MD17G1229200.v1.1
prunus_persica	Prupe.1G081500_v2.0.a1 Prupe.1G081500_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G292800_v2.0.a1
pyrus_communis	pycom09g14950 pycom13g21740 pycom13g21750 pycom14g13110 pycom16g21500 pycom17g23160
rosa_chinensis	RchiOBHm_Chr3g0475991 RchiOBHm_Chr4g0400811 RchiOBHm_Chr5g0018411
rosa_laevigata	RLG00000009179 RLG00000021107 RLG00000032141 RLG00000032366 RLG00000034317
rosa_multiflora	Rmu_sc0002141.1_g000020 Rmu_sc0004591.1_g000012 Rmu_sc0040059.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033540 Rroxscaffold_1G00059320 Rroxscaffold_2G00112700 Rroxscaffold_4G00322360 Rroxscaffold_5G00345630 Rroxscaffold_5G00348000
rosa_rugosa	Rorug01G0058800 Rorug02G0299000 Rorug02G0299100 Rorug04G0026000 Rorug05G0043600 Rorug06G0305200
rosa_samantha	Rh1AG113800 Rh1AG183300 Rh3BG233300 Rh4AG103900 Rh4BG098800 Rh4CG112100 Rh4DG095700 Rh6AG047200 Rh6AG174700 Rh6BG293500 Rh6BG425100
rosa_wichuraiana	Rw4G008400 Rw4G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	229
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	9
BsmBI	CGTCTC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	29
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	37
BssMI	GATC	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	77
BstKTI	GATC	1 cut(s)	32
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	228
CviJI	RGCY	3 cut(s)	50, 138, 177
CviKI_1	RGCY	3 cut(s)	50, 138, 177
DpnI	GATC	1 cut(s)	31
DpnII	GATC	1 cut(s)	29
DraI	TTTAAA	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	9
FaiI	YATR	2 cut(s)	122, 234
Fnu4HI	GCNGC	1 cut(s)	139
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	139
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	1 cut(s)	139
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	138
HinfI	GANTC	1 cut(s)	185
Hpy188I	TCNGA	2 cut(s)	99, 108
Hpy188III	TCNNGA	1 cut(s)	189
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	20, 228
HpyCH4V	TGCA	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	29
LpnPI	CCDG	4 cut(s)	48, 145, 174, 187
MaeI	CTAG	1 cut(s)	168
MalI	GATC	1 cut(s)	31
MboI	GATC	1 cut(s)	29
MboII	GAAGA	2 cut(s)	35, 121
MluCI	AATT	2 cut(s)	213, 244
MnlI	CCTC	2 cut(s)	128, 175
MroXI	GAANNNNTTC	1 cut(s)	217
MseI	TTAA	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	82
NdeII	GATC	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	1 cut(s)	29
SetI	ASST	1 cut(s)	179
SgeI	CNNG	8 cut(s)	24, 75, 81, 144, 180, 186, 190, 201
SmiMI	CAYNNNNRTG	1 cut(s)	82
Sse9I	AATT	2 cut(s)	213, 244
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	1 cut(s)	168
TaqI	TCGA	1 cut(s)	32
TasI	AATT	2 cut(s)	213, 244
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	1 cut(s)	228
TspDTI	ATGAA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	228
XapI	RAATTY	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	217
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.