Rh4BG098800

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000789
Physical Location & Seq
Forward (+)
16896114 .. 16900498
4385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG098800.1

Sequence Viewer

Length: 582 bp
ATGAGTAGCGAAAAGGTTCCCAATCCCATTTCTACTACTGCTGCGAACACCAAGACCACTCCTCCTCACGGCGTCGAGTTCGTTAAAGGCGTTAACGGCCTCGACAAGGTCGTCCTCCGTGATCCGCGCGGCAGTCTCGCCGAGGTGTATTTGTATGGGGGTCATGTAACATCATGGAAGAATGACCAGGGGGAGGAATTGCTATTTGTCAGCAACAAGGCTATATTTAAGCCTCCAAAAGCAATTCGTGGGGGGATCCCAATTTGCTTTCCACAATTTTCAAATATTGGTTCTCTTGATGCACATGGATTTGCTAGAAACAGATTTTGGAGCATTGACCCTGATCCATCTCCTTTTCCAACAAATACTTCCAATAAGGTTTTTGTTGATTTGATTCTTAAGCCTACTGAAGAAGATATTAAGACTTGGCCTCATAGTTATGAGTTCCGGCTGCGAGTAGCTTTGGGACCTGGAGGAGATCTGATGTTGACATCTCGCATCCGGAATACCAACTCTGATGGGAAGCCATTCACATTCACGTTTGCTTATCATACTTATTTCTCTGTTTCAGATATAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

193

Amino Acids

21.48

Weight (kDa)

8.99

Isoelectric Point (pI)

27.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 35 - 190 1.8e-37 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccII CGCG 2 cut(s) 127, 129
AccIII TCCGGA 1 cut(s) 501
AciI CCGC 2 cut(s) 125, 129
AclWI GGATC 4 cut(s) 116, 250, 263, 338
AcuI CTGAAG 1 cut(s) 429
AcyI GRCGYC 1 cut(s) 72
AfiI CCNNNNNNNGG 3 cut(s) 68, 106, 193
AflII CTTAAG 1 cut(s) 398
AgsI TTSAA 1 cut(s) 282
AjnI CCWGG 2 cut(s) 186, 469
AjuI GAANNNNNNNTTGG 4 cut(s) 310, 342, 352, 384
AluBI AGCT 1 cut(s) 461
AluI AGCT 1 cut(s) 461
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 4 cut(s) 116, 250, 263, 338
Aor13HI TCCGGA 1 cut(s) 501
AoxI GGCC 2 cut(s) 97, 428
ApeKI GCWGC 2 cut(s) 41, 451
Asp700I GAANNNNTTC 2 cut(s) 15, 527
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 467
AvaII GGWCC 1 cut(s) 467
BamHI GGATCC 1 cut(s) 255
BbvI GCAGC 2 cut(s) 28, 438
BccI CCATC 2 cut(s) 355, 512
BceAI ACGGC 2 cut(s) 85, 112
BciT130I CCWGG 2 cut(s) 188, 471
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 1 cut(s) 315
BfrI CTTAAG 1 cut(s) 398
BglII AGATCT 1 cut(s) 478
BisI GCNGC 3 cut(s) 42, 130, 452
BlsI GCNGC 3 cut(s) 43, 131, 453
Bme1390I CCNGG 2 cut(s) 188, 471
Bme18I GGWCC 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 3 cut(s) 18, 257, 468
BmrFI CCNGG 2 cut(s) 188, 471
BmsI GCATC 2 cut(s) 289, 507
BpmI CTGGAG 1 cut(s) 492
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 141, 187
BsaWI WCCGGW 1 cut(s) 501
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 106, 193
BseAI TCCGGA 1 cut(s) 501
BseBI CCWGG 2 cut(s) 188, 471
BseDI CCNNGG 2 cut(s) 141, 187
BseGI GGATG 1 cut(s) 498
BseLI CCNNNNNNNGG 3 cut(s) 68, 106, 193
BseRI GAGGAG 3 cut(s) 51, 54, 489
BseXI GCAGC 2 cut(s) 28, 438
Bsh1236I CGCG 2 cut(s) 127, 129
BshFI GGCC 2 cut(s) 99, 430
BsiSI CCGG 2 cut(s) 448, 502
BslFI GGGAC 1 cut(s) 480
BslI CCNNNNNNNGG 3 cut(s) 68, 106, 193
BsmAI GTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 480
BsnI GGCC 2 cut(s) 99, 430
Bsp13I TCCGGA 1 cut(s) 501
Bsp143I GATC 4 cut(s) 121, 255, 343, 478
BspACI CCGC 2 cut(s) 125, 129
BspANI GGCC 2 cut(s) 99, 430
BspEI TCCGGA 1 cut(s) 501
BspFNI CGCG 2 cut(s) 127, 129
BspLI GGNNCC 3 cut(s) 18, 257, 468
BspPI GGATC 4 cut(s) 116, 250, 263, 338
BspTI CTTAAG 1 cut(s) 398
BssECI CCNNGG 2 cut(s) 141, 187
BssMI GATC 4 cut(s) 121, 255, 343, 478
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 2 cut(s) 188, 471
BstACI GRCGYC 1 cut(s) 72
BstAFI CTTAAG 1 cut(s) 398
BstENI CCTNNNNNAGG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 498
BstFNI CGCG 2 cut(s) 127, 129
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 4 cut(s) 124, 258, 346, 481
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 4 cut(s) 121, 255, 343, 478
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNI CCWGG 2 cut(s) 188, 471
BstSCI CCNGG 2 cut(s) 186, 469
BstUI CGCG 2 cut(s) 127, 129
BstV1I GCAGC 2 cut(s) 28, 438
BstX2I RGATCY 2 cut(s) 255, 478
BstYI RGATCY 2 cut(s) 255, 478
BsuRI GGCC 2 cut(s) 99, 430
BtsCI GGATG 1 cut(s) 498
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 467
CseI GACGC 1 cut(s) 61
CviAII CATG 3 cut(s) 164, 174, 305
CviJI RGCY 8 cut(s) 99, 221, 232, 403, 430, 451, 461, 526
CviKI_1 RGCY 8 cut(s) 99, 221, 232, 403, 430, 451, 461, 526
DpnI GATC 4 cut(s) 123, 257, 345, 480
DpnII GATC 4 cut(s) 121, 255, 343, 478
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 467
Eco57I CTGAAG 1 cut(s) 429
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 467
EcoRII CCWGG 2 cut(s) 186, 469
FaeI CATG 3 cut(s) 167, 177, 308
FaiI YATR 9 cut(s) 156, 165, 175, 224, 306, 435, 441, 552, 575
FaqI GGGAC 1 cut(s) 480
FatI CATG 3 cut(s) 163, 173, 304
Fnu4HI GCNGC 3 cut(s) 42, 130, 452
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 3 cut(s) 42, 130, 452
FspBI CTAG 1 cut(s) 315
GlaI GCGC 1 cut(s) 128
GluI GCNGC 3 cut(s) 42, 130, 452
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 2 cut(s) 99, 430
HapII CCGG 2 cut(s) 448, 502
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 3 cut(s) 167, 177, 308
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HincII GTYRAC 2 cut(s) 94, 489
HindII GTYRAC 2 cut(s) 94, 489
HinfI GANTC 1 cut(s) 394
HpaI GTTAAC 1 cut(s) 94
HpaII CCGG 2 cut(s) 448, 502
Hpy166II GTNNAC 2 cut(s) 94, 489
Hpy188I TCNGA 3 cut(s) 483, 517, 571
Hpy188III TCNNGA 2 cut(s) 296, 502
Hpy8I GTNNAC 2 cut(s) 94, 489
Hpy99I CGWCG 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 539
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpySE526I ACGT 1 cut(s) 539
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 3 cut(s) 167, 177, 308
HspAI GCGC 1 cut(s) 127
Kpn2I TCCGGA 1 cut(s) 501
KspAI GTTAAC 1 cut(s) 94
Kzo9I GATC 4 cut(s) 121, 255, 343, 478
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 7 cut(s) 173, 200, 354, 456, 461, 483, 515
Lsp1109I GCAGC 2 cut(s) 28, 438
LweI GCATC 2 cut(s) 289, 507
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 539
MaeIII GTNAC 1 cut(s) 166
MalI GATC 4 cut(s) 123, 257, 345, 480
MboI GATC 4 cut(s) 121, 255, 343, 478
MboII GAAGA 3 cut(s) 190, 422, 425
MflI RGATCY 2 cut(s) 255, 478
MluCI AATT 4 cut(s) 197, 243, 261, 275
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 9 cut(s) 72, 75, 110, 125, 136, 187, 243, 441, 467
MroI TCCGGA 1 cut(s) 501
MroXI GAANNNNTTC 2 cut(s) 15, 527
MseI TTAA 5 cut(s) 84, 93, 228, 399, 420
MslI CAYNNNNRTG 1 cut(s) 438
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 2 cut(s) 448, 502
MspR9I CCNGG 2 cut(s) 188, 471
MvaI CCWGG 2 cut(s) 188, 471
MvnI CGCG 2 cut(s) 127, 129
MwoI GCNNNNNNNGC 1 cut(s) 96
NdeII GATC 4 cut(s) 121, 255, 343, 478
NlaIII CATG 3 cut(s) 167, 177, 308
NlaIV GGNNCC 3 cut(s) 18, 257, 468
NmeAIII GCCGAG 1 cut(s) 166
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 108
PdmI GAANNNNTTC 2 cut(s) 15, 527
PfeI GAWTC 1 cut(s) 394
PflFI GACNNNGTC 1 cut(s) 107
PkrI GCNGC 3 cut(s) 43, 131, 453
PpuMI RGGWCCY 1 cut(s) 467
Psp5II RGGWCCY 1 cut(s) 467
Psp6I CCWGG 2 cut(s) 186, 469
PspGI CCWGG 2 cut(s) 186, 469
PspN4I GGNNCC 3 cut(s) 18, 257, 468
PspPI GGNCC 1 cut(s) 467
PspPPI RGGWCCY 1 cut(s) 467
PsuI RGATCY 2 cut(s) 255, 478
PsyI GACNNNGTC 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 5 cut(s) 84, 93, 228, 399, 420
SatI GCNGC 3 cut(s) 42, 130, 452
Sau3AI GATC 4 cut(s) 121, 255, 343, 478
Sau96I GGNCC 1 cut(s) 467
ScrFI CCNGG 2 cut(s) 188, 471
SetI ASST 8 cut(s) 18, 111, 147, 381, 463, 472, 542, 581
SfaNI GCATC 2 cut(s) 289, 507
SinI GGWCC 1 cut(s) 467
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 4 cut(s) 197, 243, 261, 275
SsiI CCGC 2 cut(s) 125, 129
SspI AATATT 1 cut(s) 286
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 186, 469
TaiI ACGT 1 cut(s) 542
TaqI TCGA 2 cut(s) 75, 102
TasI AATT 4 cut(s) 197, 243, 261, 275
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 5 cut(s) 84, 93, 228, 399, 420
Tru9I TTAA 5 cut(s) 84, 93, 228, 399, 420
TseI GCWGC 2 cut(s) 41, 451
TspGWI ACGGA 1 cut(s) 107
Tth111I GACNNNGTC 1 cut(s) 107
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 467
XagI CCTNNNNNAGG 1 cut(s) 104
XmnI GAANNNNTTC 2 cut(s) 15, 527
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.