Rorug02G0299000

Belongs to the glucose-6-phosphate 1-epimerase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
33338791 .. 33340113
1323 bp
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UTR
Exon/CDS
Intron
Rorug02G0299000.1

Sequence Viewer

Length: 411 bp
ATGAAACCGTCGCAGAGTAAGTGTCGCAAAACTCTTTGCCGTCGCAAAAGTGGTCTGCTACGGCAAAATGCCGTGGCAAAAGACATTGGCGACGCCATCAACGGCGACGGAAGCTTTGCCGTCGCAGAGCCGTCGCAAATGCTTTTTTGCTACGGCAAAATAGCTTTTCGCTACGGCAAGGCGCCGTGGCTATTGCAATTTTTTTTTGTAGTGAGTGGTGAACATCGGAGATTTCTTACAGGCAAACCTTCACTAGAAAACTCCTCAAGATTATATGGGCCAATCAAGGAGTTAACATCAGAAGAAAAACCTCCAATTTATCAGGAAACTACAGTGAAAGATTATGTTATGTGCCACTACAAGAAATGGGAACTAGATGAGGTCTCTGGGCTAGAAGACTTGAAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

15.54

Weight (kDa)

9.17

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 181
AcyI GRCGYC 2 cut(s) 93, 182
AgsI TTSAA 1 cut(s) 403
AluBI AGCT 2 cut(s) 114, 164
AluI AGCT 2 cut(s) 114, 164
Alw26I GTCTC 1 cut(s) 388
AoxI GGCC 1 cut(s) 278
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 230
BanI GGYRCC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 402
BccI CCATC 1 cut(s) 104
BceAI ACGGC 9 cut(s) 24, 56, 77, 104, 115, 118, 169, 169, 190
BcgI CGANNNNNNTGC 2 cut(s) 114, 148
BcoDI GTCTC 1 cut(s) 388
BfaI CTAG 3 cut(s) 254, 374, 392
BfmI CTRYAG 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 250
BsaHI GRCGYC 2 cut(s) 93, 182
BsaI GGTCTC 1 cut(s) 388
BsaJI CCNNGG 2 cut(s) 72, 185
BseDI CCNNGG 2 cut(s) 72, 185
BseRI GAGGAG 1 cut(s) 253
BshFI GGCC 1 cut(s) 280
BshNI GGYRCC 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 388
BsnI GGCC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 388
BspANI GGCC 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 183
BspT107I GGYRCC 1 cut(s) 181
BspTNI GGTCTC 1 cut(s) 388
BssECI CCNNGG 2 cut(s) 72, 185
BssNI GRCGYC 2 cut(s) 93, 182
Bst4CI ACNGT 3 cut(s) 9, 334, 408
BstACI GRCGYC 2 cut(s) 93, 182
BstDSI CCRYGG 2 cut(s) 72, 185
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 388
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 330
BstV2I GAAGAC 1 cut(s) 402
BsuRI GGCC 1 cut(s) 280
BtgI CCRYGG 2 cut(s) 72, 185
BtsIMutI CAGTG 1 cut(s) 339
CfoI GCGC 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 278
CseI GACGC 1 cut(s) 101
CviJI RGCY 6 cut(s) 114, 130, 164, 190, 280, 391
CviKI_1 RGCY 6 cut(s) 114, 130, 164, 190, 280, 391
DinI GGCGCC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 388
EgeI GGCGCC 1 cut(s) 183
EheI GGCGCC 1 cut(s) 183
FaiI YATR 4 cut(s) 274, 276, 345, 350
FspBI CTAG 3 cut(s) 254, 374, 392
GlaI GCGC 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 1 cut(s) 280
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 184
Hin1I GRCGYC 2 cut(s) 93, 182
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HindIII AAGCTT 1 cut(s) 112
HpaI GTTAAC 1 cut(s) 294
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 2 cut(s) 221, 294
Hpy188I TCNGA 2 cut(s) 228, 301
Hpy188III TCNNGA 2 cut(s) 267, 323
Hpy8I GTNNAC 2 cut(s) 221, 294
Hpy99I CGWCG 6 cut(s) 13, 45, 95, 110, 125, 136
HpyAV CCTTC 1 cut(s) 258
HpyCH4III ACNGT 3 cut(s) 9, 334, 408
HpyCH4V TGCA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
Hsp92I GRCGYC 2 cut(s) 93, 182
HspAI GCGC 1 cut(s) 182
KasI GGCGCC 1 cut(s) 181
KspAI GTTAAC 1 cut(s) 294
LpnPI CCDG 3 cut(s) 225, 308, 372
MaeI CTAG 3 cut(s) 254, 374, 392
MboII GAAGA 2 cut(s) 314, 407
MluCI AATT 2 cut(s) 197, 315
Mly113I GGCGCC 1 cut(s) 182
MnlI CCTC 3 cut(s) 274, 321, 373
MseI TTAA 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 111
NarI GGCGCC 1 cut(s) 182
NlaIV GGNNCC 1 cut(s) 183
PluTI GGCGCC 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 1 cut(s) 278
SaqAI TTAA 1 cut(s) 293
Sau96I GGNCC 1 cut(s) 278
SetI ASST 5 cut(s) 116, 166, 250, 313, 384
SfcI CTRYAG 1 cut(s) 330
SfoI GGCGCC 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
Sse9I AATT 2 cut(s) 197, 315
SspDI GGCGCC 1 cut(s) 181
SspMI CTAG 3 cut(s) 254, 374, 392
TaaI ACNGT 3 cut(s) 9, 334, 408
TasI AATT 2 cut(s) 197, 315
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 1 cut(s) 339
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 1 cut(s) 339
XspI CTAG 3 cut(s) 254, 374, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.