FvH4_4g07740

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000789
Physical Location & Seq
Forward (+)
7220445 .. 7227898
7454 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07740.t3

Sequence Viewer

Length: 987 bp
ATGAGTAGCGAAAAGGTTCCCAATCCCACCATTGCTGCCACTCCTCCTCCTCCTTCTCACGGCGTTGAGTTCGTCAAGGGCATCAATGGCCTCGACAAGGTCGTCCTCCGTGATCCGCGCGGCAGTCTCGCCGAGGTGTATTTGTATGGGGGTCATGTAACATCATGGAAGAATGACCAGGGGGAGGAATTGCTATTTGTCAGCAACAAGGCTGTATTTAAGCCTCCAAAAGCAATTCGTGGGGGGATCCCAATTTGTTTTCCACAATTTTCAAATCTTGGTTCTCTTGATGCACATGGATTTGCTAGAAACAGATTTTGGACCGTTGACCATGATCCGTCTCCGTTTCCAACAAATACTTCCAATAAGGTTTTTGTTGATTTGATCCTTAAGCCTACTGAAGATGATATTAAGACTTGGCCTCACAGTTACGAGTTCCGCCTGCGAGTAGCTTTGGGACCTGGAGGAGATCTGATGTTGACATCTCGCATCCGGAATACCAACTCTGATGGGAAGCCATTCACATTCACGTTTGCGTATCACACTTATTTCTCTGTTTCAGATATCAGTGAAGTTCGTGTAGAAGGCTTGGAGACCCTCGATTATCTGGACAACATGCAGAACAGGCAACGATGTACTGAGCAAGGAGATGCTATAACATTTGAATCAGAGGTGGACAAGATATATCTTAGCACTCCTACAAAGATTGCTATTCTGGATCATGAGAAGAAGAGAACCTTTGTAATACGTAAAGATGGTCTTCCAGATGCTGTGGTGTGGAATCCCTGGGATAAGAAGGCAAAGGCTATGGCTGATTTTGGAGATGATGAGTACAAGCATATGCTCTGTGTGGAGACTGCTGCTATTGAGAGACCAATCACATTGAAACCTGGAGAGGAGTGGAGAGGGCGGCAGGAGCTTTCAGCTGTTCCTTCCAGTTACTGTAGTGGGCAACTTGATCCTCGAAAGGTTCTCCAGGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

329

Amino Acids

36.82

Weight (kDa)

6.1

Isoelectric Point (pI)

29.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 32 - 307 9.2e-72 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AccII CGCG 2 cut(s) 118, 120
AccIII TCCGGA 1 cut(s) 492
AciI CCGC 4 cut(s) 116, 120, 439, 910
AclWI GGATC 7 cut(s) 107, 241, 254, 329, 379, 726, 953
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 2 cut(s) 637, 833
AfiI CCNNNNNNNGG 3 cut(s) 59, 97, 184
AflII CTTAAG 1 cut(s) 389
AgsI TTSAA 3 cut(s) 273, 665, 886
AjnI CCWGG 5 cut(s) 177, 460, 785, 889, 975
AjuI GAANNNNNNNTTGG 4 cut(s) 301, 333, 343, 375
AluBI AGCT 3 cut(s) 452, 919, 926
AluI AGCT 3 cut(s) 452, 919, 926
Alw26I GTCTC 5 cut(s) 131, 345, 587, 848, 865
AlwI GGATC 7 cut(s) 107, 241, 254, 329, 379, 726, 953
AlwNI CAGNNNCTG 2 cut(s) 770, 942
Aor13HI TCCGGA 1 cut(s) 492
AoxI GGCC 2 cut(s) 88, 419
ApeKI GCWGC 2 cut(s) 35, 860
Asp700I GAANNNNTTC 2 cut(s) 15, 518
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 321, 458
AvaII GGWCC 2 cut(s) 321, 458
BamHI GGATCC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 752
BbvI GCAGC 2 cut(s) 22, 847
BccI CCATC 2 cut(s) 503, 749
BceAI ACGGC 1 cut(s) 76
BciT130I CCWGG 5 cut(s) 179, 462, 787, 891, 977
BcoDI GTCTC 5 cut(s) 131, 345, 587, 848, 865
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 943
BfrI CTTAAG 1 cut(s) 389
BglII AGATCT 1 cut(s) 469
BisI GCNGC 4 cut(s) 36, 121, 861, 911
BlsI GCNGC 4 cut(s) 37, 122, 862, 912
Bme1390I CCNGG 5 cut(s) 179, 462, 787, 891, 977
Bme18I GGWCC 2 cut(s) 321, 458
BmgT120I GGNCC 2 cut(s) 321, 458
BmiI GGNNCC 3 cut(s) 18, 248, 459
BmrFI CCNGG 5 cut(s) 179, 462, 787, 891, 977
BmsI GCATC 5 cut(s) 90, 280, 498, 640, 757
BpiI GAAGAC 1 cut(s) 752
BpmI CTGGAG 3 cut(s) 483, 912, 959
BsaAI YACGTR 1 cut(s) 749
BsaI GGTCTC 2 cut(s) 587, 865
BsaJI CCNNGG 5 cut(s) 132, 178, 785, 786, 976
BsaWI WCCGGW 1 cut(s) 492
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 97, 184
Bse1I ACTGG 1 cut(s) 936
Bse3DI GCAATG 1 cut(s) 30
BseAI TCCGGA 1 cut(s) 492
BseBI CCWGG 5 cut(s) 179, 462, 787, 891, 977
BseDI CCNNGG 5 cut(s) 132, 178, 785, 786, 976
BseGI GGATG 1 cut(s) 489
BseLI CCNNNNNNNGG 3 cut(s) 59, 97, 184
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 630
BseNI ACTGG 1 cut(s) 936
BseRI GAGGAG 5 cut(s) 33, 36, 39, 480, 911
BseXI GCAGC 2 cut(s) 22, 847
Bsh1236I CGCG 2 cut(s) 118, 120
BshFI GGCC 2 cut(s) 90, 421
BsiSI CCGG 1 cut(s) 493
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 3 cut(s) 59, 97, 184
BsmAI GTCTC 5 cut(s) 131, 345, 587, 848, 865
BsmBI CGTCTC 1 cut(s) 345
BsmFI GGGAC 1 cut(s) 471
BsnI GGCC 2 cut(s) 90, 421
Bso31I GGTCTC 2 cut(s) 587, 865
Bsp13I TCCGGA 1 cut(s) 492
Bsp143I GATC 7 cut(s) 112, 246, 334, 384, 469, 718, 958
BspACI CCGC 4 cut(s) 116, 120, 439, 910
BspANI GGCC 2 cut(s) 90, 421
BspCNI CTCAG 1 cut(s) 631
BspEI TCCGGA 1 cut(s) 492
BspFNI CGCG 2 cut(s) 118, 120
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 3 cut(s) 18, 248, 459
BspPI GGATC 7 cut(s) 107, 241, 254, 329, 379, 726, 953
BspTI CTTAAG 1 cut(s) 389
BspTNI GGTCTC 2 cut(s) 587, 865
BsrDI GCAATG 1 cut(s) 30
BsrI ACTGG 1 cut(s) 936
BssECI CCNNGG 5 cut(s) 132, 178, 785, 786, 976
BssMI GATC 7 cut(s) 112, 246, 334, 384, 469, 718, 958
Bst2UI CCWGG 5 cut(s) 179, 462, 787, 891, 977
Bst4CI ACNGT 3 cut(s) 325, 428, 944
Bst6I CTCTTC 1 cut(s) 725
BstAFI CTTAAG 1 cut(s) 389
BstBAI YACGTR 1 cut(s) 749
BstC8I GCNNGC 1 cut(s) 443
BstDEI CTNAG 2 cut(s) 639, 689
BstENI CCTNNNNNAGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 489
BstFNI CGCG 2 cut(s) 118, 120
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 7 cut(s) 115, 249, 337, 387, 472, 721, 961
BstMAI GTCTC 5 cut(s) 131, 345, 587, 848, 865
BstMBI GATC 7 cut(s) 112, 246, 334, 384, 469, 718, 958
BstMWI GCNNNNNNNGC 3 cut(s) 87, 625, 916
BstNI CCWGG 5 cut(s) 179, 462, 787, 891, 977
BstNSI RCATGY 1 cut(s) 619
BstSCI CCNGG 5 cut(s) 177, 460, 785, 889, 975
BstSFI CTRYAG 1 cut(s) 943
BstSNI TACGTA 1 cut(s) 749
BstUI CGCG 2 cut(s) 118, 120
BstV1I GCAGC 2 cut(s) 22, 847
BstV2I GAAGAC 1 cut(s) 752
BstX2I RGATCY 2 cut(s) 246, 469
BstYI RGATCY 2 cut(s) 246, 469
BsuRI GGCC 2 cut(s) 90, 421
BtsCI GGATG 1 cut(s) 489
BtsIMutI CAGTG 1 cut(s) 574
Cac8I GCNNGC 1 cut(s) 443
CaiI CAGNNNCTG 2 cut(s) 770, 942
CciI TCATGA 1 cut(s) 721
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 2 cut(s) 321, 458
Csp6I GTAC 2 cut(s) 636, 832
CviAII CATG 6 cut(s) 155, 165, 296, 332, 616, 722
CviQI GTAC 2 cut(s) 636, 832
DdeI CTNAG 2 cut(s) 639, 689
DpnI GATC 7 cut(s) 114, 248, 336, 386, 471, 720, 960
DpnII GATC 7 cut(s) 112, 246, 334, 384, 469, 718, 958
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 725
EarI CTCTTC 1 cut(s) 725
EciI GGCGGA 1 cut(s) 428
Eco105I TACGTA 1 cut(s) 749
Eco31I GGTCTC 2 cut(s) 587, 865
Eco32I GATATC 1 cut(s) 565
Eco47I GGWCC 2 cut(s) 321, 458
Eco57I CTGAAG 1 cut(s) 420
EcoNI CCTNNNNNAGG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 458
EcoRII CCWGG 5 cut(s) 177, 460, 785, 889, 975
EcoRV GATATC 1 cut(s) 565
Esp3I CGTCTC 1 cut(s) 345
FaeI CATG 6 cut(s) 158, 168, 299, 335, 619, 725
FalI AAGNNNNNCTT 4 cut(s) 722, 754, 744, 776
FaqI GGGAC 1 cut(s) 471
FatI CATG 6 cut(s) 154, 164, 295, 331, 615, 721
FauNDI CATATG 1 cut(s) 840
Fnu4HI GCNGC 4 cut(s) 36, 121, 861, 911
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 4 cut(s) 36, 121, 861, 911
FspBI CTAG 1 cut(s) 306
GlaI GCGC 1 cut(s) 119
GluI GCNGC 4 cut(s) 36, 121, 861, 911
GsuI CTGGAG 3 cut(s) 483, 912, 959
HaeIII GGCC 2 cut(s) 90, 421
HapII CCGG 1 cut(s) 493
HhaI GCGC 1 cut(s) 120
Hin1II CATG 6 cut(s) 158, 168, 299, 335, 619, 725
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HincII GTYRAC 2 cut(s) 328, 480
HindII GTYRAC 2 cut(s) 328, 480
HinfI GANTC 2 cut(s) 665, 781
HpaII CCGG 1 cut(s) 493
Hpy166II GTNNAC 3 cut(s) 328, 480, 676
Hpy188I TCNGA 4 cut(s) 474, 508, 562, 670
Hpy188III TCNNGA 6 cut(s) 287, 493, 608, 716, 722, 764
Hpy8I GTNNAC 3 cut(s) 328, 480, 676
HpyAV CCTTC 4 cut(s) 63, 578, 790, 942
HpyCH4III ACNGT 3 cut(s) 325, 428, 944
HpyCH4IV ACGT 2 cut(s) 530, 748
HpyCH4V TGCA 2 cut(s) 293, 619
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 625, 916
HpyF3I CTNAG 2 cut(s) 639, 689
HpySE526I ACGT 2 cut(s) 530, 748
Hsp92II CATG 6 cut(s) 158, 168, 299, 335, 619, 725
HspAI GCGC 1 cut(s) 118
Kpn2I TCCGGA 1 cut(s) 492
Kzo9I GATC 7 cut(s) 112, 246, 334, 384, 469, 718, 958
LmnI GCTCC 1 cut(s) 916
Lsp1109I GCAGC 2 cut(s) 22, 847
LweI GCATC 5 cut(s) 90, 280, 498, 640, 757
MaeI CTAG 1 cut(s) 306
MaeII ACGT 2 cut(s) 530, 748
MaeIII GTNAC 3 cut(s) 157, 428, 938
MalI GATC 7 cut(s) 114, 248, 336, 386, 471, 720, 960
MboI GATC 7 cut(s) 112, 246, 334, 384, 469, 718, 958
MboII GAAGA 5 cut(s) 181, 413, 739, 742, 752
MflI RGATCY 2 cut(s) 246, 469
MluCI AATT 4 cut(s) 188, 234, 252, 266
MmeI TCCRAC 1 cut(s) 374
MroI TCCGGA 1 cut(s) 492
MroXI GAANNNNTTC 2 cut(s) 15, 518
MseI TTAA 3 cut(s) 219, 390, 411
MspA1I CMGCKG 1 cut(s) 926
MspCI CTTAAG 1 cut(s) 389
MspI CCGG 1 cut(s) 493
MspR9I CCNGG 5 cut(s) 179, 462, 787, 891, 977
MvaI CCWGG 5 cut(s) 179, 462, 787, 891, 977
MvnI CGCG 2 cut(s) 118, 120
MwoI GCNNNNNNNGC 3 cut(s) 87, 625, 916
NdeI CATATG 1 cut(s) 840
NdeII GATC 7 cut(s) 112, 246, 334, 384, 469, 718, 958
NlaIII CATG 6 cut(s) 158, 168, 299, 335, 619, 725
NlaIV GGNNCC 3 cut(s) 18, 248, 459
NmeAIII GCCGAG 1 cut(s) 157
NspI RCATGY 1 cut(s) 619
PagI TCATGA 1 cut(s) 721
PasI CCCWGGG 1 cut(s) 786
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdmI GAANNNNTTC 2 cut(s) 15, 518
PfeI GAWTC 2 cut(s) 665, 781
PflFI GACNNNGTC 1 cut(s) 98
PkrI GCNGC 4 cut(s) 37, 122, 862, 912
Ppu21I YACGTR 1 cut(s) 749
PpuMI RGGWCCY 1 cut(s) 458
Psp5II RGGWCCY 1 cut(s) 458
Psp6I CCWGG 5 cut(s) 177, 460, 785, 889, 975
PspGI CCWGG 5 cut(s) 177, 460, 785, 889, 975
PspN4I GGNNCC 3 cut(s) 18, 248, 459
PspPI GGNCC 2 cut(s) 321, 458
PspPPI RGGWCCY 1 cut(s) 458
PstNI CAGNNNCTG 2 cut(s) 770, 942
PsuI RGATCY 2 cut(s) 246, 469
PsyI GACNNNGTC 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 926
RsaI GTAC 2 cut(s) 637, 833
RsaNI GTAC 2 cut(s) 636, 832
SaqAI TTAA 3 cut(s) 219, 390, 411
SatI GCNGC 4 cut(s) 36, 121, 861, 911
Sau3AI GATC 7 cut(s) 112, 246, 334, 384, 469, 718, 958
Sau96I GGNCC 2 cut(s) 321, 458
ScrFI CCNGG 5 cut(s) 179, 462, 787, 891, 977
SfaNI GCATC 5 cut(s) 90, 280, 498, 640, 757
SfcI CTRYAG 1 cut(s) 943
SinI GGWCC 2 cut(s) 321, 458
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
SnaBI TACGTA 1 cut(s) 749
Sse9I AATT 4 cut(s) 188, 234, 252, 266
SsiI CCGC 4 cut(s) 116, 120, 439, 910
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 5 cut(s) 177, 460, 785, 889, 975
TaaI ACNGT 3 cut(s) 325, 428, 944
TaiI ACGT 2 cut(s) 533, 751
TaqI TCGA 3 cut(s) 93, 600, 964
TasI AATT 4 cut(s) 188, 234, 252, 266
TatI WGTACW 2 cut(s) 635, 831
TauI GCSGC 2 cut(s) 123, 913
TfiI GAWTC 2 cut(s) 665, 781
Tru1I TTAA 3 cut(s) 219, 390, 411
Tru9I TTAA 3 cut(s) 219, 390, 411
TscAI CASTG 1 cut(s) 574
TseI GCWGC 2 cut(s) 35, 860
TspGWI ACGGA 3 cut(s) 98, 327, 333
TspRI CASTG 1 cut(s) 574
Tth111I GACNNNGTC 1 cut(s) 98
Vha464I CTTAAG 1 cut(s) 389
VpaK11BI GGWCC 2 cut(s) 321, 458
XagI CCTNNNNNAGG 1 cut(s) 95
XceI RCATGY 1 cut(s) 619
XmnI GAANNNNTTC 2 cut(s) 15, 518
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.