Rmu_sc0002141.1_g000020

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002141.1
OG0000789
Physical Location & Seq
Forward (+)
69074 .. 72127
3054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002141.1_g000020.1.cds

Sequence Viewer

Length: 525 bp
atgatttttgattcatcaaccagagtagttttcaatcttggttctgttgatgcacatggatgtgctagaaacaaattttggagcatttaccctgatccatctccttttccaactaataattccattaaggtttttgttgatttcatccttaagcctactgaagatgatattaagacttggcctcacagttgcgagttccggctgcgagtagctttgggacctggaggagatctaatgttgtcatctcgtatccggaataccaactctgatgggaagccattcacattcacgtttgcatatcacacttcagatatcagtgaagttcgtgtagaaggcttggagaccctcgattatctggacaacgtgcagaacaggaaaagtagtattgagcaaggagatgctataacatttgaatcggaggtggacaagatatatattagaactcctacaaagattgcaattctggatcatgagaagaagagaacatttgtggtacgccaaagatggtcttccagatgcccgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

174

Amino Acids

19.94

Weight (kDa)

6.9

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 252
AclWI GGATC 2 cut(s) 89, 474
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 2 cut(s) 180, 291
AfaI GTAC 1 cut(s) 495
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 2 cut(s) 34, 413
AjnI CCWGG 1 cut(s) 220
AjuI GAANNNNNNNTTGG 4 cut(s) 61, 93, 103, 135
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 2 cut(s) 89, 474
Aor13HI TCCGGA 1 cut(s) 252
AoxI GGCC 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 202
ApoI RAATTY 1 cut(s) 74
Asp700I GAANNNNTTC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 218
AvaII GGWCC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 501
BbvI GCAGC 1 cut(s) 189
BccI CCATC 3 cut(s) 106, 263, 498
BciT130I CCWGG 1 cut(s) 222
BciVI GTATCC 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 1 cut(s) 66
BfrI CTTAAG 1 cut(s) 149
BfuI GTATCC 1 cut(s) 260
BglII AGATCT 1 cut(s) 229
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 3 cut(s) 40, 388, 506
BpiI GAAGAC 1 cut(s) 501
BpmI CTGGAG 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 335
BsaWI WCCGGW 1 cut(s) 252
BseAI TCCGGA 1 cut(s) 252
BseBI CCWGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 65, 144
BseRI GAGGAG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 189
BsgI GTGCAG 1 cut(s) 386
BshFI GGCC 1 cut(s) 181
BsiSI CCGG 2 cut(s) 199, 253
BslFI GGGAC 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 335
BsmFI GGGAC 1 cut(s) 231
BsnI GGCC 1 cut(s) 181
Bso31I GGTCTC 1 cut(s) 335
Bsp13I TCCGGA 1 cut(s) 252
Bsp143I GATC 3 cut(s) 94, 229, 466
BspANI GGCC 1 cut(s) 181
BspEI TCCGGA 1 cut(s) 252
BspHI TCATGA 1 cut(s) 469
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 2 cut(s) 89, 474
BspTI CTTAAG 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 335
BssMI GATC 3 cut(s) 94, 229, 466
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 473
BstAFI CTTAAG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 65, 144
BstKTI GATC 3 cut(s) 97, 232, 469
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 3 cut(s) 94, 229, 466
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 501
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 1 cut(s) 181
BtsCI GGATG 2 cut(s) 65, 144
BtsIMutI CAGTG 1 cut(s) 322
CciI TCATGA 1 cut(s) 469
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 494
CviAII CATG 2 cut(s) 56, 470
CviJI RGCY 6 cut(s) 154, 181, 202, 212, 277, 336
CviKI_1 RGCY 6 cut(s) 154, 181, 202, 212, 277, 336
CviQI GTAC 1 cut(s) 494
DpnI GATC 3 cut(s) 96, 231, 468
DpnII GATC 3 cut(s) 94, 229, 466
Eam1104I CTCTTC 1 cut(s) 473
EarI CTCTTC 1 cut(s) 473
Eco31I GGTCTC 1 cut(s) 335
Eco32I GATATC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 2 cut(s) 180, 291
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 220
EcoRV GATATC 1 cut(s) 313
FaeI CATG 2 cut(s) 59, 473
FaiI YATR 6 cut(s) 57, 298, 404, 433, 435, 471
FalI AAGNNNNNCTT 2 cut(s) 493, 525
FaqI GGGAC 1 cut(s) 231
FatI CATG 2 cut(s) 55, 469
Fnu4HI GCNGC 1 cut(s) 203
FokI GGATG 2 cut(s) 72, 131
Fsp4HI GCNGC 1 cut(s) 203
FspBI CTAG 1 cut(s) 66
GluI GCNGC 1 cut(s) 203
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 1 cut(s) 181
HapII CCGG 2 cut(s) 199, 253
Hin1II CATG 2 cut(s) 59, 473
HinfI GANTC 2 cut(s) 11, 413
HpaII CCGG 2 cut(s) 199, 253
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 3 cut(s) 268, 310, 418
Hpy188III TCNNGA 5 cut(s) 253, 356, 464, 470, 513
Hpy8I GTNNAC 1 cut(s) 424
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4IV ACGT 2 cut(s) 290, 363
HpyCH4V TGCA 4 cut(s) 53, 296, 367, 458
HpySE526I ACGT 2 cut(s) 290, 363
Hsp92II CATG 2 cut(s) 59, 473
Kpn2I TCCGGA 1 cut(s) 252
Kzo9I GATC 3 cut(s) 94, 229, 466
LmnI GCTCC 1 cut(s) 81
LpnPI CCDG 9 cut(s) 34, 105, 207, 212, 234, 266, 341, 358, 449
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 3 cut(s) 40, 388, 506
MaeI CTAG 1 cut(s) 66
MaeII ACGT 2 cut(s) 290, 363
MalI GATC 3 cut(s) 96, 231, 468
MboI GATC 3 cut(s) 94, 229, 466
MboII GAAGA 4 cut(s) 173, 487, 490, 501
MflI RGATCY 1 cut(s) 229
MluCI AATT 3 cut(s) 74, 118, 459
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 4 cut(s) 192, 218, 356, 412
MroI TCCGGA 1 cut(s) 252
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 3 cut(s) 126, 150, 171
MslI CAYNNNNRTG 2 cut(s) 58, 60
MspCI CTTAAG 1 cut(s) 149
MspI CCGG 2 cut(s) 199, 253
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
NdeII GATC 3 cut(s) 94, 229, 466
NlaIII CATG 2 cut(s) 59, 473
NlaIV GGNNCC 1 cut(s) 219
PagI TCATGA 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 2 cut(s) 11, 413
PkrI GCNGC 1 cut(s) 204
PpuMI RGGWCCY 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 218
PspPPI RGGWCCY 1 cut(s) 218
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
RseI CAYNNNNRTG 2 cut(s) 58, 60
SaqAI TTAA 3 cut(s) 126, 150, 171
SatI GCNGC 1 cut(s) 203
Sau3AI GATC 3 cut(s) 94, 229, 466
Sau96I GGNCC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 222
SetI ASST 6 cut(s) 132, 214, 223, 293, 366, 423
SfaNI GCATC 3 cut(s) 40, 388, 506
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 2 cut(s) 58, 60
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 3 cut(s) 74, 118, 459
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 188
TaiI ACGT 2 cut(s) 293, 366
TaqI TCGA 1 cut(s) 348
TasI AATT 3 cut(s) 74, 118, 459
TfiI GAWTC 2 cut(s) 11, 413
Tru1I TTAA 3 cut(s) 126, 150, 171
Tru9I TTAA 3 cut(s) 126, 150, 171
TscAI CASTG 1 cut(s) 322
TseI GCWGC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 133
TspRI CASTG 1 cut(s) 322
Vha464I CTTAAG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.