Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000789

Physical Location & Seq

Genomic Coordinates Forward (+)

72003286 .. 72006240

Gene Structure 2955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021107

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGTGTTATGGATAATGCCACTCTACCGTCTACAATTTGTGCTGGCCCGGCAACCGTCCAGAAATTTCCCGGTCTCTAAAAAGTTACAGGCGCGCTCCAATTCCCAAATAGTGAATAAAAGCCGGATACCCATCGTGTTCGACTCGGACTCGGACTCAAATCTTCTCCTCCGCTCCTATTGTTGCTCGGCTAATGTGACTATAGATGTAACTTGGCTTCTCATATTTCTGATTCAAGGGTTAGCTGGAGATGACGAAGAAGGATCGACAAATAAACGATTGGCTTTTCGTTTTTCTGGGTCTGATGTTAAATATATAACCAGAAGTCGTAAAGAAAATCTCACATTTATTCCTCTAGCACCAGCCTGTGTGTTCTCTTTCAGAGGCTGTAAGAAAGGAAAAGCGGAGAGGCAGAAAGTAAGCAGCTACAAATCAGATCTAACAAGGAGTTGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.31

Weight (kDa)

9.97

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57330
fragaria_vesca	FvH4_4g07740 FvH4_4g07740 FvH4_4g07740 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010 FvH4_6g28010
malus_domestica	MD05G1327600.v1.1 MD09G1230300.v1.1 MD13G1246400.v1.1 MD16G1253800.v1.1 MD17G1229200.v1.1
prunus_persica	Prupe.1G081500_v2.0.a1 Prupe.1G081500_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G106800_v2.0.a1 Prupe.3G292800_v2.0.a1
pyrus_communis	pycom09g14950 pycom13g21740 pycom13g21750 pycom14g13110 pycom16g21500 pycom17g23160
rosa_chinensis	RchiOBHm_Chr3g0475991 RchiOBHm_Chr4g0400811 RchiOBHm_Chr5g0018411
rosa_laevigata	RLG00000009179 RLG00000021107 RLG00000032141 RLG00000032366 RLG00000034317
rosa_multiflora	Rmu_sc0002141.1_g000020 Rmu_sc0004591.1_g000012 Rmu_sc0040059.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033540 Rroxscaffold_1G00059320 Rroxscaffold_2G00112700 Rroxscaffold_4G00322360 Rroxscaffold_5G00345630 Rroxscaffold_5G00348000
rosa_rugosa	Rorug01G0058800 Rorug02G0299000 Rorug02G0299100 Rorug04G0026000 Rorug05G0043600 Rorug06G0305200
rosa_samantha	Rh1AG113800 Rh1AG183300 Rh3BG233300 Rh4AG103900 Rh4BG098800 Rh4CG112100 Rh4DG095700 Rh6AG047200 Rh6AG174700 Rh6BG293500 Rh6BG425100
rosa_wichuraiana	Rw4G008400 Rw4G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	31
AccII	CGCG	1 cut(s)	94
AciI	CCGC	2 cut(s)	172, 404
AclWI	GGATC	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	236
AluBI	AGCT	2 cut(s)	245, 426
AluI	AGCT	2 cut(s)	245, 426
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	271
AlwNI	CAGNNNCTG	1 cut(s)	387
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	423
ApoI	RAATTY	1 cut(s)	64
AspLEI	GCGC	2 cut(s)	94, 96
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	2 cut(s)	49, 71
BarI	GAAGNNNNNNTAC	2 cut(s)	201, 233
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	1 cut(s)	140
BciVI	GTATCC	1 cut(s)	120
BcnI	CCSGG	2 cut(s)	49, 71
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	120
BglII	AGATCT	1 cut(s)	436
BisI	GCNGC	1 cut(s)	424
BlsI	GCNGC	1 cut(s)	425
Bme1390I	CCNGG	2 cut(s)	49, 71
BmgT120I	GGNCC	1 cut(s)	46
BmrFI	CCNGG	2 cut(s)	49, 71
BpmI	CTGGAG	1 cut(s)	267
BpuMI	CCSGG	2 cut(s)	49, 71
BsaBI	GATNNNNATC	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	79
BsaXI	ACNNNNNCTCC	1 cut(s)	439
Bse8I	GATNNNNATC	1 cut(s)	131
BseJI	GATNNNNATC	1 cut(s)	131
BsePI	GCGCGC	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	47
BsiSI	CCGG	3 cut(s)	49, 71, 124
BsmAI	GTCTC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	263, 436
BspACI	CCGC	2 cut(s)	172, 404
BspANI	GGCC	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	271
BspTNI	GGTCTC	1 cut(s)	79
BsrBI	CCGCTC	1 cut(s)	174
BssHII	GCGCGC	1 cut(s)	92
BssMI	GATC	2 cut(s)	263, 436
Bst4CI	ACNGT	2 cut(s)	29, 57
BstC8I	GCNNGC	2 cut(s)	45, 94
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	94, 96
BstKTI	GATC	2 cut(s)	266, 439
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	2 cut(s)	263, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstSCI	CCNGG	2 cut(s)	47, 69
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BsuI	GTATCC	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	47
Cac8I	GCNNGC	2 cut(s)	45, 94
CaiI	CAGNNNCTG	1 cut(s)	387
CfoI	GCGC	2 cut(s)	94, 96
Cfr13I	GGNCC	1 cut(s)	46
CviJI	RGCY	9 cut(s)	47, 123, 191, 217, 245, 284, 365, 387, 426
CviKI_1	RGCY	9 cut(s)	47, 123, 191, 217, 245, 284, 365, 387, 426
DpnI	GATC	2 cut(s)	265, 438
DpnII	GATC	2 cut(s)	263, 436
Eco31I	GGTCTC	1 cut(s)	79
FaiI	YATR	5 cut(s)	10, 203, 224, 315, 317
FblI	GTMKAC	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	424
Fsp4HI	GCNGC	1 cut(s)	424
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	2 cut(s)	93, 95
GluI	GCNGC	1 cut(s)	424
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	3 cut(s)	49, 71, 124
HhaI	GCGC	2 cut(s)	94, 96
Hin6I	GCGC	2 cut(s)	92, 94
HinP1I	GCGC	2 cut(s)	92, 94
HinfI	GANTC	4 cut(s)	143, 149, 155, 232
HpaII	CCGG	3 cut(s)	49, 71, 124
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	6 cut(s)	148, 154, 231, 304, 383, 436
Hpy188III	TCNNGA	1 cut(s)	60
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	2 cut(s)	29, 57
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HspAI	GCGC	2 cut(s)	92, 94
Kzo9I	GATC	2 cut(s)	263, 436
LmnI	GCTCC	2 cut(s)	101, 179
Lsp1109I	GCAGC	1 cut(s)	435
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	3 cut(s)	84, 196, 208
MalI	GATC	2 cut(s)	265, 438
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	2 cut(s)	263, 436
MboII	GAAGA	2 cut(s)	155, 269
MflI	RGATCY	1 cut(s)	436
MluCI	AATT	3 cut(s)	35, 64, 100
MlyI	GAGTC	3 cut(s)	137, 143, 149
MnlI	CCTC	4 cut(s)	179, 363, 377, 402
MseI	TTAA	1 cut(s)	309
MspI	CCGG	3 cut(s)	49, 71, 124
MspR9I	CCNGG	2 cut(s)	49, 71
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	49
NciI	CCSGG	2 cut(s)	49, 71
NdeII	GATC	2 cut(s)	263, 436
NmeAIII	GCCGAG	1 cut(s)	167
NmuCI	GTSAC	1 cut(s)	196
PauI	GCGCGC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	425
PleI	GAGTC	3 cut(s)	137, 143, 149
PpsI	GAGTC	3 cut(s)	137, 143, 149
PspPI	GGNCC	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	436
PteI	GCGCGC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	424
Sau3AI	GATC	2 cut(s)	263, 436
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	3 cut(s)	137, 143, 149
ScrFI	CCNGG	2 cut(s)	49, 71
SetI	ASST	2 cut(s)	247, 428
SfcI	CTRYAG	1 cut(s)	201
Sse9I	AATT	3 cut(s)	35, 64, 100
SsiI	CCGC	2 cut(s)	172, 404
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	47, 69
TaaI	ACNGT	2 cut(s)	29, 57
TaqI	TCGA	2 cut(s)	141, 266
TasI	AATT	3 cut(s)	35, 64, 100
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	423
Tsp45I	GTSAC	1 cut(s)	196
XapI	RAATTY	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	31
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.