Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Reverse (-)

15977022 .. 15977662

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24111.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCAAGAATCATTTGAGTTTGTTGAGCATGTGGATATGGTGGTACCTGAATGTCTCAAATCAGATAAGGAGATTCTTACATTGATTGAGAAAAGTTGCAGACAATGGAAGAAGAGAAACAAAAAGAGAAGTTTTACATCCTATATCTCCATTGCTCCCAAGTTACTCAAATTGCTACCAAAGGACCATGAAATATCTTTGAAGAGGGTCAAGCATTTGATTGAACCACGACCTGAACCTCCTGACTACTCTTGTCAAAAAGCCGTAGCAGCCCAACTTTCTCGAAAACAGTGCTCTCGCAGAAGCAGTCTTCCAACTTTGGAAGGCTACGGTTTGCATCTCACAGAACCTGGGACGGTGTGCTTTATATCAAAAGAAAGATCTCTGAGTTTAGTTTCTGTAGGATTTTACAGAAGTGGATTTGGATACCCAAGTCATTCCCAGTTTGATTTTGAAGGCAGCAAGGTCACTGCCAGGAAACCAGAATTTGTGCAATACAGCCGGAAAAAGGTCAAAACAGGGGATACTTCCATCCATCCTGTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

20.89

Weight (kDa)

9.49

Isoelectric Point (pI)

60.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	485
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	508
AgsI	TTSAA	3 cut(s)	202, 224, 455
AjnI	CCWGG	2 cut(s)	349, 473
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	59
AlwNI	CAGNNNCTG	1 cut(s)	350
ApeKI	GCWGC	2 cut(s)	269, 459
ApoI	RAATTY	1 cut(s)	485
Asp718I	GGTACC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	184
BaeI	ACNNNNGTAYC	2 cut(s)	418, 451
BanI	GGYRCC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	281, 471
BccI	CCATC	2 cut(s)	539, 543
BceAI	ACGGC	1 cut(s)	248
BcgI	CGANNNNNNTGC	2 cut(s)	273, 307
BciT130I	CCWGG	2 cut(s)	351, 475
BciVI	GTATCC	2 cut(s)	419, 517
BcoDI	GTCTC	1 cut(s)	59
BfmI	CTRYAG	2 cut(s)	399, 540
BfuI	GTATCC	2 cut(s)	419, 517
BglII	AGATCT	1 cut(s)	380
BisI	GCNGC	2 cut(s)	270, 460
BlsI	GCNGC	2 cut(s)	271, 461
Bme1390I	CCNGG	2 cut(s)	351, 475
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	351, 475
BmrI	ACTGGG	1 cut(s)	436
BmsI	GCATC	1 cut(s)	346
BmuI	ACTGGG	1 cut(s)	436
BpiI	GAAGAC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse1I	ACTGG	1 cut(s)	442
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	351, 475
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	3 cut(s)	137, 531, 535
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	1 cut(s)	442
BseXI	GCAGC	2 cut(s)	281, 471
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	502
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	1 cut(s)	380
BspCNI	CTCAG	1 cut(s)	378
BspLI	GGNNCC	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	442
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	1 cut(s)	380
Bst2UI	CCWGG	2 cut(s)	351, 475
Bst4CI	ACNGT	3 cut(s)	291, 332, 358
Bst6I	CTCTTC	2 cut(s)	107, 197
BstDEI	CTNAG	1 cut(s)	386
BstF5I	GGATG	3 cut(s)	137, 531, 535
BstKTI	GATC	1 cut(s)	383
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	380
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	2 cut(s)	351, 475
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	2 cut(s)	349, 473
BstSFI	CTRYAG	2 cut(s)	399, 540
BstV1I	GCAGC	2 cut(s)	281, 471
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BsuI	GTATCC	2 cut(s)	419, 517
BtsCI	GGATG	3 cut(s)	137, 531, 535
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	2 cut(s)	296, 468
CaiI	CAGNNNCTG	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	2 cut(s)	29, 188
CviJI	RGCY	4 cut(s)	263, 272, 327, 501
CviKI_1	RGCY	4 cut(s)	263, 272, 327, 501
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	1 cut(s)	386
DpnI	GATC	1 cut(s)	382
DpnII	GATC	1 cut(s)	380
Eam1104I	CTCTTC	2 cut(s)	107, 197
EarI	CTCTTC	2 cut(s)	107, 197
Eco47I	GGWCC	1 cut(s)	184
EcoRII	CCWGG	2 cut(s)	349, 473
FaeI	CATG	2 cut(s)	32, 191
FaiI	YATR	5 cut(s)	30, 38, 144, 189, 368
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	2 cut(s)	28, 187
Fnu4HI	GCNGC	2 cut(s)	270, 460
FokI	GGATG	3 cut(s)	124, 518, 522
Fsp4HI	GCNGC	2 cut(s)	270, 460
GluI	GCNGC	2 cut(s)	270, 460
HapII	CCGG	1 cut(s)	502
Hin1II	CATG	2 cut(s)	32, 191
HinfI	GANTC	2 cut(s)	8, 73
HpaII	CCGG	1 cut(s)	502
Hpy188I	TCNGA	2 cut(s)	64, 387
Hpy188III	TCNNGA	2 cut(s)	242, 282
HpyAV	CCTTC	2 cut(s)	317, 449
HpyCH4III	ACNGT	3 cut(s)	291, 332, 358
HpyCH4V	TGCA	4 cut(s)	4, 99, 337, 493
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	386
Hsp92II	CATG	2 cut(s)	32, 191
KpnI	GGTACC	1 cut(s)	47
Kzo9I	GATC	1 cut(s)	380
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	2 cut(s)	281, 471
LweI	GCATC	1 cut(s)	346
MaeIII	GTNAC	2 cut(s)	162, 466
MalI	GATC	1 cut(s)	382
MboI	GATC	1 cut(s)	380
MboII	GAAGA	4 cut(s)	121, 124, 214, 302
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	2 cut(s)	170, 485
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	2 cut(s)	198, 249
MspI	CCGG	1 cut(s)	502
MspR9I	CCNGG	2 cut(s)	351, 475
MvaI	CCWGG	2 cut(s)	351, 475
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeII	GATC	1 cut(s)	380
NlaIII	CATG	2 cut(s)	32, 191
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	8, 73
PkrI	GCNGC	2 cut(s)	271, 461
Psp6I	CCWGG	2 cut(s)	349, 473
PspGI	CCWGG	2 cut(s)	349, 473
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	380
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SatI	GCNGC	2 cut(s)	270, 460
Sau3AI	GATC	1 cut(s)	380
Sau96I	GGNCC	1 cut(s)	184
ScrFI	CCNGG	2 cut(s)	351, 475
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	6 cut(s)	49, 235, 241, 352, 468, 513
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	2 cut(s)	399, 540
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	2 cut(s)	170, 485
StyD4I	CCNGG	2 cut(s)	349, 473
TaaI	ACNGT	3 cut(s)	291, 332, 358
TaqI	TCGA	1 cut(s)	283
TasI	AATT	2 cut(s)	170, 485
TfiI	GAWTC	2 cut(s)	8, 73
TscAI	CASTG	2 cut(s)	296, 475
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	2 cut(s)	269, 459
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	2 cut(s)	296, 475
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	1 cut(s)	485
XceI	RCATGY	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.