Rmu_sc0000498.1_g000030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000498.1
OG0001602
Physical Location & Seq
Forward (+)
121737 .. 122705
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000498.1_g000030.1.cds

Sequence Viewer

Length: 969 bp
atgaagccctcccttgaggcaattacacaagcagttgagaaaagtgcggaagaatcatcgaggaatatggacaaagccgtggagaatattgagcgacatatccagcaaattattaattctttgaaccaagatacagaggagctggaaacacaatcttgggttcaagagtcatatcatgacgtattgacgagtgaggaggaagattgggcagaagctaatgagcctttggaggccaaggtacttatggagtgccctcctacacctactacaactttagggaagtcccttgaagtcacggccttacctcaatctcataatgtattccatgagtcaattttggatgaggatgaggatacagatgtggatgagccctatgaaaagaaacttaaggttgggacatctgaggattatgtgttacactatacaactacgcttgaagcatatgaagatagtgatattgatgagtccttgacaggtgaggaattttacattaaagaaagtaaagttcagcttcatgcgaatgagtaccaagtgccagaagcaatcatcatagctcataaagatcaagaatacaaggatgacatggaggattgcttagaagaggagtccagcaaatctcctatagacgagcctctaattctatcacatggccgaccacttgaccattacttgccacatttgagctttacatttgttccctccatacaagaaactcttgagtttgttgatcatgtggagatggtgataggtgaatatcccaattctgataagaagattcttttggccgtgcttgtgggacataagaagagaaagagacaatggaagaagagaaagaaaatgagaaagttgaaatcctatctttccattgttaccaaggagcacaaattgcttaaaagggatcacctagcatctttgaaaaaggtcaagcatctcatggaaccaagaccaaaacctcctgattactcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

322

Amino Acids

37.31

Weight (kDa)

4.95

Isoelectric Point (pI)

55.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 47
AclWI GGATC 1 cut(s) 906
AcoI YGGCCR 2 cut(s) 649, 783
AcsI RAATTY 1 cut(s) 482
AfaI GTAC 2 cut(s) 240, 527
AflII CTTAAG 1 cut(s) 386
AgsI TTSAA 6 cut(s) 124, 164, 290, 437, 850, 916
AjuI GAANNNNNNNTTGG 2 cut(s) 764, 796
AluBI AGCT 5 cut(s) 142, 215, 511, 554, 684
AluI AGCT 5 cut(s) 142, 215, 511, 554, 684
Alw21I GWGCWC 1 cut(s) 882
Alw26I GTCTC 1 cut(s) 808
AlwI GGATC 1 cut(s) 906
AoxI GGCC 4 cut(s) 231, 297, 649, 783
ApoI RAATTY 1 cut(s) 482
AseI ATTAAT 1 cut(s) 114
AsuHPI GGTGA 4 cut(s) 488, 754, 761, 893
BaeGI GKGCMC 1 cut(s) 254
BaeI ACNNNNGTAYC 2 cut(s) 345, 378
BanII GRGCYC 1 cut(s) 372
Bbv12I GWGCWC 1 cut(s) 882
BccI CCATC 1 cut(s) 733
BceAI ACGGC 3 cut(s) 62, 312, 770
BciVI GTATCC 1 cut(s) 346
BclI TGATCA 1 cut(s) 727
BcoDI GTCTC 1 cut(s) 808
BfaI CTAG 1 cut(s) 905
BfmI CTRYAG 1 cut(s) 621
BfrI CTTAAG 1 cut(s) 386
BfuI GTATCC 1 cut(s) 346
BmiI GGNNCC 1 cut(s) 939
BmsI GCATC 2 cut(s) 917, 937
BpuEI CTTGAG 2 cut(s) 35, 737
BsaJI CCNNGG 3 cut(s) 78, 234, 873
BseDI CCNNGG 3 cut(s) 78, 234, 873
BseGI GGATG 4 cut(s) 346, 352, 370, 583
BseMII CTCAG 1 cut(s) 393
BseRI GAGGAG 3 cut(s) 152, 209, 617
BseSI GKGCMC 1 cut(s) 254
BshFI GGCC 4 cut(s) 233, 299, 651, 785
BsiHKAI GWGCWC 1 cut(s) 882
BslFI GGGAC 3 cut(s) 268, 409, 810
BsmAI GTCTC 1 cut(s) 808
BsmFI GGGAC 3 cut(s) 268, 409, 810
BsnI GGCC 4 cut(s) 233, 299, 651, 785
Bsp1286I GDGCHC 3 cut(s) 254, 372, 882
Bsp143I GATC 3 cut(s) 562, 727, 898
BspACI CCGC 1 cut(s) 47
BspANI GGCC 4 cut(s) 233, 299, 651, 785
BspCNI CTCAG 1 cut(s) 394
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 939
BspPI GGATC 1 cut(s) 906
BspTI CTTAAG 1 cut(s) 386
BssECI CCNNGG 3 cut(s) 78, 234, 873
BssMI GATC 3 cut(s) 562, 727, 898
BssT1I CCWWGG 2 cut(s) 234, 873
Bst6I CTCTTC 3 cut(s) 594, 800, 821
BstAFI CTTAAG 1 cut(s) 386
BstAPI GCANNNNNTGC 1 cut(s) 886
BstDEI CTNAG 2 cut(s) 402, 595
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 4 cut(s) 346, 352, 370, 583
BstKTI GATC 3 cut(s) 565, 730, 901
BstMAI GTCTC 1 cut(s) 808
BstMBI GATC 3 cut(s) 562, 727, 898
BstMWI GCNNNNNNNGC 1 cut(s) 886
BstSFI CTRYAG 1 cut(s) 621
BstSLI GKGCMC 1 cut(s) 254
BsuI GTATCC 1 cut(s) 346
BsuRI GGCC 4 cut(s) 233, 299, 651, 785
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 4 cut(s) 346, 352, 370, 583
CciI TCATGA 1 cut(s) 175
Csp6I GTAC 2 cut(s) 239, 526
CviAII CATG 7 cut(s) 176, 326, 515, 583, 647, 731, 934
CviQI GTAC 2 cut(s) 239, 526
DdeI CTNAG 2 cut(s) 402, 595
DpnI GATC 3 cut(s) 564, 729, 900
DpnII GATC 3 cut(s) 562, 727, 898
EaeI YGGCCR 2 cut(s) 649, 783
Eam1104I CTCTTC 3 cut(s) 594, 800, 821
EarI CTCTTC 3 cut(s) 594, 800, 821
Eco130I CCWWGG 2 cut(s) 234, 873
Eco24I GRGCYC 1 cut(s) 372
EcoT14I CCWWGG 2 cut(s) 234, 873
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 2 cut(s) 234, 873
FaeI CATG 7 cut(s) 179, 329, 518, 586, 650, 734, 937
FalI AAGNNNNNCTT 4 cut(s) 495, 527, 699, 731
FaqI GGGAC 3 cut(s) 268, 409, 810
FatI CATG 7 cut(s) 175, 325, 514, 582, 646, 730, 933
FauNDI CATATG 1 cut(s) 442
FbaI TGATCA 1 cut(s) 727
FokI GGATG 4 cut(s) 353, 359, 377, 590
FriOI GRGCYC 1 cut(s) 372
FspBI CTAG 1 cut(s) 905
HaeIII GGCC 4 cut(s) 233, 299, 651, 785
Hin1II CATG 7 cut(s) 179, 329, 518, 586, 650, 734, 937
HinfI GANTC 6 cut(s) 53, 167, 329, 464, 605, 775
HphI GGTGA 4 cut(s) 488, 754, 761, 893
Hpy188I TCNGA 2 cut(s) 403, 766
Hpy188III TCNNGA 6 cut(s) 164, 176, 566, 716, 956, 966
HpyCH4IV ACGT 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 886
HpyF3I CTNAG 2 cut(s) 402, 595
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 7 cut(s) 179, 329, 518, 586, 650, 734, 937
Ksp22I TGATCA 1 cut(s) 727
Kzo9I GATC 3 cut(s) 562, 727, 898
LmnI GCTCC 2 cut(s) 139, 877
LpnPI CCDG 5 cut(s) 116, 128, 459, 549, 622
LweI GCATC 2 cut(s) 917, 937
MaeI CTAG 1 cut(s) 905
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 3 cut(s) 292, 414, 868
MalI GATC 3 cut(s) 564, 729, 900
MboI GATC 3 cut(s) 562, 727, 898
MboII GAAGA 8 cut(s) 62, 212, 458, 611, 784, 817, 835, 838
MhlI GDGCHC 3 cut(s) 254, 372, 882
MluCI AATT 8 cut(s) 21, 108, 115, 333, 482, 636, 760, 884
MlyI GAGTC 4 cut(s) 176, 338, 473, 614
MseI TTAA 4 cut(s) 114, 387, 492, 891
MslI CAYNNNNRTG 1 cut(s) 519
MspCI CTTAAG 1 cut(s) 386
MwoI GCNNNNNNNGC 1 cut(s) 886
NdeI CATATG 1 cut(s) 442
NdeII GATC 3 cut(s) 562, 727, 898
NlaIII CATG 7 cut(s) 179, 329, 518, 586, 650, 734, 937
NlaIV GGNNCC 1 cut(s) 939
NmuCI GTSAC 1 cut(s) 292
PagI TCATGA 1 cut(s) 175
PfeI GAWTC 2 cut(s) 53, 775
PleI GAGTC 4 cut(s) 175, 337, 472, 613
PpsI GAGTC 4 cut(s) 175, 337, 472, 613
PshBI ATTAAT 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 939
RsaI GTAC 2 cut(s) 240, 527
RsaNI GTAC 2 cut(s) 239, 526
RseI CAYNNNNRTG 1 cut(s) 519
SaqAI TTAA 4 cut(s) 114, 387, 492, 891
Sau3AI GATC 3 cut(s) 562, 727, 898
SchI GAGTC 4 cut(s) 176, 338, 473, 614
SduI GDGCHC 3 cut(s) 254, 372, 882
SfaNI GCATC 2 cut(s) 917, 937
SfcI CTRYAG 1 cut(s) 621
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 3 cut(s) 14, 386, 716
SmoI CTYRAG 3 cut(s) 14, 386, 716
Sse9I AATT 8 cut(s) 21, 108, 115, 333, 482, 636, 760, 884
SsiI CCGC 1 cut(s) 47
SspI AATATT 1 cut(s) 88
SspMI CTAG 1 cut(s) 905
StyI CCWWGG 2 cut(s) 234, 873
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 59
TasI AATT 8 cut(s) 21, 108, 115, 333, 482, 636, 760, 884
TfiI GAWTC 2 cut(s) 53, 775
Tru1I TTAA 4 cut(s) 114, 387, 492, 891
Tru9I TTAA 4 cut(s) 114, 387, 492, 891
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 4 cut(s) 17, 390, 459, 503
Vha464I CTTAAG 1 cut(s) 386
VspI ATTAAT 1 cut(s) 114
XapI RAATTY 1 cut(s) 482
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XspI CTAG 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.