Rroxscaffold_2G00077900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001602
Physical Location & Seq
Reverse (-)
1351659 .. 1353546
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00077900.1

Sequence Viewer

Length: 1233 bp
ATGCTTCGGTGGCAGCAGGCTGGAACGCAGGGCTGCAGGGAGGGGGCATCAGGGGCTGCTGTGCAAGGTTGCAAGCGCACGGGCGCGCGGGCTGTAGCGAAGGCTCGGCTAGCTCGGGCTAGGGGCTGCTTTGTGAATGAGTGTGTTCCATATGCTCCATGGTTGGTCATTCAATGGAGACATGTCCAAGCTTCCAATATCAAGGATACTATGATCAAAATACCATGCTTGGAGGATTTCATGACAACCAAGGGCATTGGAATAATTATTATTCACCTCGATACAATCCGGCATGGGATAATCCTCCTTACTCTTCGTGGAATGACGATCCAAACGTGCAACAAGGATCTTTCAATGAGTTCGAAGATTCTCCATATTCATACCATGACTATTGGCCACAAGCCCCACCTCCTCAAAACTCAGCTTCGGATGCTTCTTTTCAAGCTTGGATTCGGGGAAAAGAAAGCTCTTGATGATGATTTGGCAGAAAAACTAAAGCGTTTGGAGAACTTAATATCTCAGGAGCATCCTTCTAAACCGATGGCAACTTTAGGGGAGCTCCCAATAACTACAGTTTTGTGTCAACCTCATGATGCAGTCCATGATCCAACATTTGATGAGGATGAAGTAATGGATTTGGAGGAGTCTTATAAAGAGCCACTCAACGTTGAGATTTTTGAGGATCACTACATGACCGAGCTTGAAAAGTGGGAAATGGAAGATCCCTTTGATGATGAGGAATCCCATCATGAAGAAAGTAAGGATGAGCTTCATGCAAATGTTCCCCAAGTGCACGAAACAATCATGTTACCTTATGAAGATCCAAAAGGATATGAGGCCACAAGGGAGGATTGCTTAAAAAAGGAGTCCATCAAAGCTCCTACATTTGGACCTTTATTGCTAGCACATGGAAGACCATCTGATCCTACAACGCCTCATTCAACCTCTACACATGTTCTCCCTATCCACGCAATGGTCAAGTTTGTTGATCATGTGGAGATGGTCATAAGTGAATATCTCAAATCAGATAAGGAGATAATTCTTGCTGTGATTGTCAAAGTTAAGAAAAGAAGGAGACAATGGAAGAAGAGAAAGAAAAAGAGAAGCATCAAATCCTATCTTTCCGTTGCTCCCAAGTTACCCAAGTTGCTGTCAAGGGATCATGAAACATCTTTGAAGAGGCTTAAGCATTTGATCGAACCGCGGCCTAAACCTCCCGATTACTCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

410

Amino Acids

46.97

Weight (kDa)

8.46

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 651
AccB7I CCANNNNNTGG 1 cut(s) 973
AccII CGCG 3 cut(s) 86, 88, 1204
AciI CCGC 3 cut(s) 88, 1202, 1204
AclI AACGTT 1 cut(s) 666
AclWI GGATC 8 cut(s) 322, 354, 599, 690, 716, 815, 917, 1167
AcoI YGGCCR 1 cut(s) 394
AfiI CCNNNNNNNGG 2 cut(s) 887, 973
AflII CTTAAG 1 cut(s) 1184
AflIII ACRYGT 2 cut(s) 181, 952
AgsI TTSAA 6 cut(s) 173, 354, 442, 704, 942, 1177
AluBI AGCT 9 cut(s) 113, 191, 424, 445, 467, 559, 700, 769, 878
AluI AGCT 9 cut(s) 113, 191, 424, 445, 467, 559, 700, 769, 878
Alw21I GWGCWC 2 cut(s) 561, 795
Alw26I GTCTC 2 cut(s) 172, 1069
Alw44I GTGCAC 1 cut(s) 791
AlwI GGATC 8 cut(s) 322, 354, 599, 690, 716, 815, 917, 1167
AlwNI CAGNNNCTG 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 114
AoxI GGCC 3 cut(s) 394, 837, 1205
ApaLI GTGCAC 1 cut(s) 791
ApeKI GCWGC 4 cut(s) 13, 33, 56, 126
AspLEI GCGC 3 cut(s) 78, 86, 88
AspS9I GGNCC 1 cut(s) 890
AsuHPI GGTGA 1 cut(s) 266
AsuII TTCGAA 1 cut(s) 362
AsuNHI GCTAGC 2 cut(s) 109, 901
AvaI CYCGRG 1 cut(s) 114
AvaII GGWCC 1 cut(s) 890
BaeGI GKGCMC 1 cut(s) 795
BalI TGGCCA 1 cut(s) 396
BanII GRGCYC 1 cut(s) 561
BbsI GAAGAC 1 cut(s) 919
Bbv12I GWGCWC 2 cut(s) 561, 795
BbvI GCAGC 4 cut(s) 20, 25, 43, 113
BccI CCATC 5 cut(s) 535, 753, 878, 925, 994
BciVI GTATCC 1 cut(s) 199
BclI TGATCA 2 cut(s) 213, 988
BcoDI GTCTC 2 cut(s) 172, 1069
BfaI CTAG 4 cut(s) 110, 120, 902, 1227
BfmI CTRYAG 3 cut(s) 34, 93, 570
BfrI CTTAAG 1 cut(s) 1184
BfuI GTATCC 1 cut(s) 199
BisI GCNGC 5 cut(s) 14, 34, 57, 127, 1205
BlsI GCNGC 5 cut(s) 15, 35, 58, 128, 1206
Bme18I GGWCC 1 cut(s) 890
BmeT110I CYCGRG 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 890
BmsI GCATC 5 cut(s) 56, 420, 535, 583, 1116
BmtI GCTAGC 2 cut(s) 113, 905
BpiI GAAGAC 1 cut(s) 919
Bpu14I TTCGAA 1 cut(s) 362
BsaJI CCNNGG 3 cut(s) 158, 249, 1202
BsaXI ACNNNNNCTCC 2 cut(s) 942, 972
Bsc4I CCNNNNNNNGG 2 cut(s) 887, 973
Bse3DI GCAATG 1 cut(s) 978
BseDI CCNNGG 3 cut(s) 158, 249, 1202
BseGI GGATG 4 cut(s) 435, 526, 628, 769
BseLI CCNNNNNNNGG 2 cut(s) 887, 973
BseMI GCAATG 1 cut(s) 978
BseMII CTCAG 2 cut(s) 434, 533
BsePI GCGCGC 1 cut(s) 84
BseRI GAGGAG 2 cut(s) 401, 656
BseSI GKGCMC 1 cut(s) 795
BseXI GCAGC 4 cut(s) 20, 25, 43, 113
Bsh1236I CGCG 3 cut(s) 86, 88, 1204
BshFI GGCC 3 cut(s) 396, 839, 1207
BsiHKAI GWGCWC 2 cut(s) 561, 795
BsiHKCI CYCGRG 1 cut(s) 114
BsiSI CCGG 1 cut(s) 289
BslI CCNNNNNNNGG 2 cut(s) 887, 973
BsmAI GTCTC 2 cut(s) 172, 1069
BsnI GGCC 3 cut(s) 396, 839, 1207
BsoBI CYCGRG 1 cut(s) 114
Bsp119I TTCGAA 1 cut(s) 362
Bsp1286I GDGCHC 2 cut(s) 561, 795
Bsp19I CCATGG 1 cut(s) 158
BspACI CCGC 3 cut(s) 88, 1202, 1204
BspANI GGCC 3 cut(s) 396, 839, 1207
BspCNI CTCAG 2 cut(s) 433, 532
BspFNI CGCG 3 cut(s) 86, 88, 1204
BspHI TCATGA 4 cut(s) 240, 589, 748, 1162
BspMAI CTGCAG 1 cut(s) 38
BspOI GCTAGC 2 cut(s) 113, 905
BspPI GGATC 8 cut(s) 322, 354, 599, 690, 716, 815, 917, 1167
BspT104I TTCGAA 1 cut(s) 362
BspTI CTTAAG 1 cut(s) 1184
BsrDI GCAATG 1 cut(s) 978
BssECI CCNNGG 3 cut(s) 158, 249, 1202
BssHII GCGCGC 1 cut(s) 84
BssT1I CCWWGG 2 cut(s) 158, 249
Bst4CI ACNGT 1 cut(s) 574
Bst6I CTCTTC 3 cut(s) 318, 1082, 1172
BstAFI CTTAAG 1 cut(s) 1184
BstBI TTCGAA 1 cut(s) 362
BstC8I GCNNGC 6 cut(s) 18, 74, 86, 90, 111, 903
BstDEI CTNAG 2 cut(s) 420, 519
BstDSI CCRYGG 2 cut(s) 158, 1202
BstF5I GGATG 4 cut(s) 435, 526, 628, 769
BstFNI CGCG 3 cut(s) 86, 88, 1204
BstHHI GCGC 3 cut(s) 78, 86, 88
BstMAI GTCTC 2 cut(s) 172, 1069
BstMWI GCNNNNNNNGC 4 cut(s) 10, 53, 110, 430
BstNSI RCATGY 2 cut(s) 185, 956
BstSFI CTRYAG 3 cut(s) 34, 93, 570
BstSLI GKGCMC 1 cut(s) 795
BstUI CGCG 3 cut(s) 86, 88, 1204
BstV1I GCAGC 4 cut(s) 20, 25, 43, 113
BstV2I GAAGAC 1 cut(s) 919
BstX2I RGATCY 3 cut(s) 346, 721, 820
BstYI RGATCY 3 cut(s) 346, 721, 820
BsuI GTATCC 1 cut(s) 199
BsuRI GGCC 3 cut(s) 396, 839, 1207
BtgI CCRYGG 2 cut(s) 158, 1202
BtsCI GGATG 4 cut(s) 435, 526, 628, 769
Cac8I GCNNGC 6 cut(s) 18, 74, 86, 90, 111, 903
CaiI CAGNNNCTG 1 cut(s) 56
CciI TCATGA 4 cut(s) 240, 589, 748, 1162
CfoI GCGC 3 cut(s) 78, 86, 88
Cfr13I GGNCC 1 cut(s) 890
Cfr42I CCGCGG 1 cut(s) 1205
DdeI CTNAG 2 cut(s) 420, 519
EaeI YGGCCR 1 cut(s) 394
Eam1104I CTCTTC 3 cut(s) 318, 1082, 1172
EarI CTCTTC 3 cut(s) 318, 1082, 1172
Ecl136II GAGCTC 1 cut(s) 559
Eco130I CCWWGG 2 cut(s) 158, 249
Eco24I GRGCYC 1 cut(s) 561
Eco47I GGWCC 1 cut(s) 890
Eco53kI GAGCTC 1 cut(s) 559
Eco88I CYCGRG 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 559
EcoT14I CCWWGG 2 cut(s) 158, 249
EcoT38I GRGCYC 1 cut(s) 561
ErhI CCWWGG 2 cut(s) 158, 249
FauI CCCGC 1 cut(s) 81
FauNDI CATATG 1 cut(s) 151
FbaI TGATCA 2 cut(s) 213, 988
Fnu4HI GCNGC 5 cut(s) 14, 34, 57, 127, 1205
FokI GGATG 4 cut(s) 442, 513, 635, 776
FriOI GRGCYC 1 cut(s) 561
Fsp4HI GCNGC 5 cut(s) 14, 34, 57, 127, 1205
FspBI CTAG 4 cut(s) 110, 120, 902, 1227
GlaI GCGC 3 cut(s) 77, 85, 87
GluI GCNGC 5 cut(s) 14, 34, 57, 127, 1205
HaeIII GGCC 3 cut(s) 396, 839, 1207
HapII CCGG 1 cut(s) 289
HhaI GCGC 3 cut(s) 78, 86, 88
Hin6I GCGC 3 cut(s) 76, 84, 86
HinP1I GCGC 3 cut(s) 76, 84, 86
HincII GTYRAC 1 cut(s) 584
HindII GTYRAC 1 cut(s) 584
HindIII AAGCTT 2 cut(s) 189, 443
HinfI GANTC 5 cut(s) 367, 450, 644, 740, 866
HpaII CCGG 1 cut(s) 289
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 2 cut(s) 584, 793
Hpy188I TCNGA 3 cut(s) 429, 922, 1027
Hpy188III TCNNGA 8 cut(s) 241, 470, 521, 590, 749, 1163, 1217, 1227
Hpy8I GTNNAC 2 cut(s) 584, 793
HpyAV CCTTC 3 cut(s) 94, 540, 1065
HpyCH4III ACNGT 1 cut(s) 574
HpyCH4IV ACGT 2 cut(s) 335, 666
HpyCH4V TGCA 7 cut(s) 36, 64, 72, 339, 596, 776, 793
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 53, 110, 430
HpyF3I CTNAG 2 cut(s) 420, 519
HpySE526I ACGT 2 cut(s) 335, 666
HspAI GCGC 3 cut(s) 76, 84, 86
Ksp22I TGATCA 2 cut(s) 213, 988
KspI CCGCGG 1 cut(s) 1205
LmnI GCTCC 6 cut(s) 160, 523, 556, 564, 883, 1135
LpnPI CCDG 7 cut(s) 2, 6, 14, 22, 36, 302, 506
Lsp1109I GCAGC 4 cut(s) 20, 25, 43, 113
LweI GCATC 5 cut(s) 56, 420, 535, 583, 1116
MaeI CTAG 4 cut(s) 110, 120, 902, 1227
MaeII ACGT 2 cut(s) 335, 666
MaeIII GTNAC 2 cut(s) 807, 1137
MboII GAAGA 9 cut(s) 305, 376, 731, 764, 830, 924, 1096, 1099, 1189
MflI RGATCY 3 cut(s) 346, 721, 820
MhlI GDGCHC 2 cut(s) 561, 795
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 2 cut(s) 264, 1038
MluNI TGGCCA 1 cut(s) 396
MlyI GAGTC 2 cut(s) 653, 875
MmeI TCCRAC 1 cut(s) 632
Mox20I TGGCCA 1 cut(s) 396
MscI TGGCCA 1 cut(s) 396
MseI TTAA 4 cut(s) 512, 857, 1062, 1185
MslI CAYNNNNRTG 1 cut(s) 777
Msp20I TGGCCA 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 1204
MspCI CTTAAG 1 cut(s) 1184
MspI CCGG 1 cut(s) 289
MvnI CGCG 3 cut(s) 86, 88, 1204
MwoI GCNNNNNNNGC 4 cut(s) 10, 53, 110, 430
NcoI CCATGG 1 cut(s) 158
NdeI CATATG 1 cut(s) 151
NheI GCTAGC 2 cut(s) 109, 901
NmeAIII GCCGAG 1 cut(s) 85
NspI RCATGY 2 cut(s) 185, 956
NspV TTCGAA 1 cut(s) 362
PagI TCATGA 4 cut(s) 240, 589, 748, 1162
PauI GCGCGC 1 cut(s) 84
PciI ACATGT 2 cut(s) 181, 952
PcsI WCGNNNNNNNCGW 1 cut(s) 332
PfeI GAWTC 3 cut(s) 367, 450, 740
PflMI CCANNNNNTGG 1 cut(s) 973
PkrI GCNGC 5 cut(s) 15, 35, 58, 128, 1206
PleI GAGTC 2 cut(s) 652, 874
PpsI GAGTC 2 cut(s) 652, 874
PscI ACATGT 2 cut(s) 181, 952
PsiI TTATAA 1 cut(s) 651
Psp124BI GAGCTC 1 cut(s) 561
Psp1406I AACGTT 1 cut(s) 666
PspPI GGNCC 1 cut(s) 890
PstI CTGCAG 1 cut(s) 38
PstNI CAGNNNCTG 1 cut(s) 56
PsuI RGATCY 3 cut(s) 346, 721, 820
PteI GCGCGC 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 777
SacI GAGCTC 1 cut(s) 561
SacII CCGCGG 1 cut(s) 1205
SaqAI TTAA 4 cut(s) 512, 857, 1062, 1185
SatI GCNGC 5 cut(s) 14, 34, 57, 127, 1205
Sau96I GGNCC 1 cut(s) 890
SchI GAGTC 2 cut(s) 653, 875
SduI GDGCHC 2 cut(s) 561, 795
SfaNI GCATC 5 cut(s) 56, 420, 535, 583, 1116
SfcI CTRYAG 3 cut(s) 34, 93, 570
Sfr303I CCGCGG 1 cut(s) 1205
SfuI TTCGAA 1 cut(s) 362
SgrBI CCGCGG 1 cut(s) 1205
SinI GGWCC 1 cut(s) 890
SmiMI CAYNNNNRTG 1 cut(s) 777
SmlI CTYRAG 1 cut(s) 1184
SmoI CTYRAG 1 cut(s) 1184
Sse9I AATT 2 cut(s) 264, 1038
SsiI CCGC 3 cut(s) 88, 1202, 1204
SspMI CTAG 4 cut(s) 110, 120, 902, 1227
SstI GAGCTC 1 cut(s) 561
StyI CCWWGG 2 cut(s) 158, 249
TaaI ACNGT 1 cut(s) 574
TaiI ACGT 2 cut(s) 338, 669
TaqI TCGA 3 cut(s) 279, 362, 1197
TaqII GACCGA 1 cut(s) 710
TasI AATT 2 cut(s) 264, 1038
TauI GCSGC 1 cut(s) 1207
TfiI GAWTC 3 cut(s) 367, 450, 740
Tru1I TTAA 4 cut(s) 512, 857, 1062, 1185
Tru9I TTAA 4 cut(s) 512, 857, 1062, 1185
TseI GCWGC 4 cut(s) 13, 33, 56, 126
TspDTI ATGAA 7 cut(s) 229, 368, 639, 761, 765, 831, 1179
TspGWI ACGGA 1 cut(s) 1114
Van91I CCANNNNNTGG 1 cut(s) 973
Vha464I CTTAAG 1 cut(s) 1184
VneI GTGCAC 1 cut(s) 791
VpaK11BI GGWCC 1 cut(s) 890
XbaI TCTAGA 1 cut(s) 1226
XceI RCATGY 2 cut(s) 185, 956
XcmI CCANNNNNNNNNTGG 1 cut(s) 156
XspI CTAG 4 cut(s) 110, 120, 902, 1227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.