Rmu_sc0016839.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016839.1
OG0001602
Physical Location & Seq
Reverse (-)
1434 .. 2336
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016839.1_g000001.1.cds

Sequence Viewer

Length: 903 bp
atggacaaagccgtggagaatattgagcaacatatccagcaaattattaattctttgaaccaagaaacagaggagcgggaaatacaatgttgggtccaagagtcatatcatgaggtgttgacgagtgaggaagaagattgggtagaagctaatgagcctttggaggccaaggtaattatggagtgccctcctacacctactacaactttagggcagtcccttgaagtcacagccttacctcaacctcataatgtattacatgaatcaattttggatgaggatgaggatacagatttggatgagccctatgaaaagaaacttgaggttgggacgtgtgaggattatgtgtcacaccatacaaccgagcttgaagcatatgaagatagtgacattgaagagtccttgacaaacgaggaattttacattaaagaaagtaaggttcaacttcatgcgaatgagtaccaagtgccgaaagcaatcatcatagctcataaagatcaagaatacaaggatgacatggaggattgcttagaagaggagtccagcaaatctcctatagacgggcctctaattctatcacatggccgaccacctgaccattacttaccacattcgagctttacatttgttccctccatacaagaaactcttgagtttgtggatcatgtggagatggtgatatgtgaatatcccaattctgataagaagattcttttggccgtgcttgtgggacataagaagagaatgagacaatggaagaagagaaagaaaacaagaaagttgaaatcctatctttccattgttaccaaggaggacaagttgcttacaagggatcacctagcatctttgaaaaaggtcaagcatctcatggaaccaagacgaaaacctcctgattactcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

34.99

Weight (kDa)

4.85

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 76
AciI CCGC 1 cut(s) 76
AclWI GGATC 2 cut(s) 669, 840
AcoI YGGCCR 2 cut(s) 583, 717
AcsI RAATTY 1 cut(s) 416
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 1 cut(s) 560
AflIII ACRYGT 1 cut(s) 332
AgsI TTSAA 7 cut(s) 58, 224, 371, 395, 443, 784, 850
AjiI CACGTC 1 cut(s) 333
AjuI GAANNNNNNNTTGG 2 cut(s) 698, 730
AluBI AGCT 4 cut(s) 149, 367, 488, 618
AluI AGCT 4 cut(s) 149, 367, 488, 618
Alw26I GTCTC 1 cut(s) 742
AlwI GGATC 2 cut(s) 669, 840
AoxI GGCC 4 cut(s) 165, 563, 583, 717
ApoI RAATTY 1 cut(s) 416
AseI ATTAAT 1 cut(s) 48
AspS9I GGNCC 2 cut(s) 94, 563
AsuHPI GGTGA 2 cut(s) 688, 827
AvaII GGWCC 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 306
BccI CCATC 1 cut(s) 667
BceAI ACGGC 1 cut(s) 704
BciVI GTATCC 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 742
BfaI CTAG 1 cut(s) 839
BfmI CTRYAG 1 cut(s) 555
BfuI GTATCC 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 94
BmgBI CACGTC 1 cut(s) 333
BmgT120I GGNCC 2 cut(s) 94, 563
BmiI GGNNCC 2 cut(s) 95, 873
BmsI GCATC 2 cut(s) 851, 871
BpuEI CTTGAG 2 cut(s) 341, 671
BsaJI CCNNGG 3 cut(s) 12, 168, 807
BsaXI ACNNNNNCTCC 2 cut(s) 803, 833
Bsc4I CCNNNNNNNGG 1 cut(s) 560
BseDI CCNNGG 3 cut(s) 12, 168, 807
BseGI GGATG 4 cut(s) 280, 286, 304, 517
BseLI CCNNNNNNNGG 1 cut(s) 560
BseRI GAGGAG 2 cut(s) 86, 551
BseSI GKGCMC 1 cut(s) 188
BshFI GGCC 4 cut(s) 167, 565, 585, 719
BslFI GGGAC 3 cut(s) 202, 343, 744
BslI CCNNNNNNNGG 1 cut(s) 560
BsmAI GTCTC 1 cut(s) 742
BsmFI GGGAC 3 cut(s) 202, 343, 744
BsnI GGCC 4 cut(s) 167, 565, 585, 719
Bsp1286I GDGCHC 2 cut(s) 188, 306
Bsp143I GATC 3 cut(s) 496, 661, 832
BspACI CCGC 1 cut(s) 76
BspANI GGCC 4 cut(s) 167, 565, 585, 719
BspHI TCATGA 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 95, 873
BspPI GGATC 2 cut(s) 669, 840
BsrBI CCGCTC 1 cut(s) 76
BssECI CCNNGG 3 cut(s) 12, 168, 807
BssMI GATC 3 cut(s) 496, 661, 832
BssT1I CCWWGG 2 cut(s) 168, 807
Bst6I CTCTTC 4 cut(s) 390, 528, 734, 755
BstDEI CTNAG 1 cut(s) 529
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 4 cut(s) 280, 286, 304, 517
BstKTI GATC 3 cut(s) 499, 664, 835
BstMAI GTCTC 1 cut(s) 742
BstMBI GATC 3 cut(s) 496, 661, 832
BstSFI CTRYAG 1 cut(s) 555
BstSLI GKGCMC 1 cut(s) 188
BsuI GTATCC 1 cut(s) 280
BsuRI GGCC 4 cut(s) 167, 565, 585, 719
BtgI CCRYGG 1 cut(s) 12
BtrI CACGTC 1 cut(s) 333
BtsCI GGATG 4 cut(s) 280, 286, 304, 517
CciI TCATGA 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 94, 563
Csp6I GTAC 1 cut(s) 460
CviAII CATG 7 cut(s) 110, 260, 449, 517, 581, 665, 868
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 1 cut(s) 529
DpnI GATC 3 cut(s) 498, 663, 834
DpnII GATC 3 cut(s) 496, 661, 832
EaeI YGGCCR 2 cut(s) 583, 717
Eam1104I CTCTTC 4 cut(s) 390, 528, 734, 755
EarI CTCTTC 4 cut(s) 390, 528, 734, 755
Eco130I CCWWGG 2 cut(s) 168, 807
Eco24I GRGCYC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 94
EcoT14I CCWWGG 2 cut(s) 168, 807
EcoT38I GRGCYC 1 cut(s) 306
ErhI CCWWGG 2 cut(s) 168, 807
FaeI CATG 7 cut(s) 113, 263, 452, 520, 584, 668, 871
FalI AAGNNNNNCTT 2 cut(s) 633, 665
FaqI GGGAC 3 cut(s) 202, 343, 744
FatI CATG 7 cut(s) 109, 259, 448, 516, 580, 664, 867
FauI CCCGC 1 cut(s) 69
FauNDI CATATG 1 cut(s) 376
FokI GGATG 4 cut(s) 287, 293, 311, 524
FriOI GRGCYC 1 cut(s) 306
FspBI CTAG 1 cut(s) 839
HaeIII GGCC 4 cut(s) 167, 565, 585, 719
Hin1II CATG 7 cut(s) 113, 263, 452, 520, 584, 668, 871
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 5 cut(s) 101, 263, 398, 539, 709
HphI GGTGA 2 cut(s) 688, 827
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 1 cut(s) 700
Hpy188III TCNNGA 4 cut(s) 110, 500, 650, 890
Hpy8I GTNNAC 1 cut(s) 120
HpyCH4IV ACGT 1 cut(s) 332
HpyF3I CTNAG 1 cut(s) 529
HpySE526I ACGT 1 cut(s) 332
Hsp92II CATG 7 cut(s) 113, 263, 452, 520, 584, 668, 871
Kzo9I GATC 3 cut(s) 496, 661, 832
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 3 cut(s) 50, 556, 606
LweI GCATC 2 cut(s) 851, 871
MaeI CTAG 1 cut(s) 839
MaeII ACGT 1 cut(s) 332
MaeIII GTNAC 4 cut(s) 226, 348, 386, 802
MalI GATC 3 cut(s) 498, 663, 834
MbiI CCGCTC 1 cut(s) 76
MboI GATC 3 cut(s) 496, 661, 832
MboII GAAGA 9 cut(s) 143, 146, 392, 407, 545, 718, 751, 769, 772
MhlI GDGCHC 2 cut(s) 188, 306
MluCI AATT 7 cut(s) 42, 49, 174, 267, 416, 570, 694
MlyI GAGTC 3 cut(s) 110, 407, 548
MseI TTAA 3 cut(s) 48, 426, 901
MslI CAYNNNNRTG 1 cut(s) 453
NdeI CATATG 1 cut(s) 376
NdeII GATC 3 cut(s) 496, 661, 832
NlaIII CATG 7 cut(s) 113, 263, 452, 520, 584, 668, 871
NlaIV GGNNCC 2 cut(s) 95, 873
NmuCI GTSAC 3 cut(s) 226, 348, 386
PagI TCATGA 1 cut(s) 109
PfeI GAWTC 2 cut(s) 263, 709
PleI GAGTC 3 cut(s) 109, 406, 547
PpsI GAGTC 3 cut(s) 109, 406, 547
PshBI ATTAAT 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 95, 873
PspPI GGNCC 2 cut(s) 94, 563
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 3 cut(s) 48, 426, 901
Sau3AI GATC 3 cut(s) 496, 661, 832
Sau96I GGNCC 2 cut(s) 94, 563
SchI GAGTC 3 cut(s) 110, 407, 548
SduI GDGCHC 2 cut(s) 188, 306
SfaNI GCATC 2 cut(s) 851, 871
SfcI CTRYAG 1 cut(s) 555
SinI GGWCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 2 cut(s) 320, 650
SmoI CTYRAG 2 cut(s) 320, 650
Sse9I AATT 7 cut(s) 42, 49, 174, 267, 416, 570, 694
SsiI CCGC 1 cut(s) 76
SspI AATATT 1 cut(s) 22
SspMI CTAG 1 cut(s) 839
StyI CCWWGG 2 cut(s) 168, 807
TaiI ACGT 1 cut(s) 335
TaqI TCGA 1 cut(s) 614
TasI AATT 7 cut(s) 42, 49, 174, 267, 416, 570, 694
TfiI GAWTC 2 cut(s) 263, 709
Tru1I TTAA 3 cut(s) 48, 426, 901
Tru9I TTAA 3 cut(s) 48, 426, 901
TseFI GTSAC 3 cut(s) 226, 348, 386
Tsp45I GTSAC 3 cut(s) 226, 348, 386
TspDTI ATGAA 4 cut(s) 276, 324, 393, 437
VpaK11BI GGWCC 1 cut(s) 94
VspI ATTAAT 1 cut(s) 48
XapI RAATTY 1 cut(s) 416
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XspI CTAG 1 cut(s) 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.