Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Forward (+)

5850222 .. 5854226

Gene Structure 4005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTCTAATAATTATGATGAGATAATTAAGGCTCTAAATGCTTCTACTCAAGCTTTGATTCAGGAACAGCAAGCTCGTGAGGAGGATGGTGATTGGGCAGAAACTCAAAGGCGTTGGGAGACCTTCATCTCTCGGGAGCACCCTCCCGCACCGATAACAACTTTAGGAGAGCTCTCGACAACTACGGCTTTGTGTCAACCTCATGATGCAGTCCATTATTCAACATTTGATGAGGATGAAGTAATGGATTTTGAGAAGTCATATAAAGAGCAACTCAATGTTGGTACTTGTGAGGATTATGAAGTACACTACATGACCGAGCTTGAAAAGTGGGAAATGGAAGATCCCTTTGATGATGAGGAATCCTATCATGAAGAAAGTAAGGATGAGCTTCATGCAAATGTGCCCCAAGTGCCTAAAACAATCATGGTATCACATGAAGATCCAAAAGGTTATGAGACCACTAGGGAGGATTGCTTAAAAGAGGAGTCCATCAAAGGAAGACCATCTGATCCTTCAACGCCTCATTCAAGCTCTACACATGTTTTCCCCATCCAAGCAACGTTTGAGTTTGTTGATCATATGGAGATGCGTCGGTGCATTGTCAACCATGGATTTACCGAGCTAACGCTTTATACCCTTTCGGGTGGGCCCTCGCTAGGCCCCCAAGGAGTCCCCCACTCCCGTGCTAAGATAGACCTCCGTTTGGTCGGTATATTGTTTGTTGAGGGAGCCGCGCCGAGCGAGAGGGTGTTGGGTAGCAAACCCGATCTTCGGTTTCCGAGTGGCAGGGGTCAACGTGCTCGATCGTGGCCGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

273

Amino Acids

31.09

Weight (kDa)

4.77

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	737
AciI	CCGC	2 cut(s)	147, 735
AclI	AACGTT	1 cut(s)	563
AclWI	GGATC	3 cut(s)	338, 437, 506
AcoI	YGGCCR	1 cut(s)	812
AfaI	GTAC	2 cut(s)	286, 306
AfiI	CCNNNNNNNGG	3 cut(s)	659, 706, 774
AflIII	ACRYGT	1 cut(s)	541
AgsI	TTSAA	4 cut(s)	222, 326, 519, 531
AleI	CACNNNNGTG	1 cut(s)	684
AluBI	AGCT	7 cut(s)	53, 74, 172, 322, 391, 534, 625
AluI	AGCT	7 cut(s)	53, 74, 172, 322, 391, 534, 625
Alw21I	GWGCWC	3 cut(s)	141, 174, 805
Alw26I	GTCTC	2 cut(s)	113, 452
AlwI	GGATC	3 cut(s)	338, 437, 506
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	3 cut(s)	650, 661, 812
ApaI	GGGCCC	1 cut(s)	654
AspLEI	GCGC	1 cut(s)	739
AspS9I	GGNCC	3 cut(s)	650, 651, 662
AsuHPI	GGTGA	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	132
BaeGI	GKGCMC	2 cut(s)	408, 654
BanII	GRGCYC	2 cut(s)	174, 654
BauI	CACGAG	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	508
Bbv12I	GWGCWC	3 cut(s)	141, 174, 805
BccI	CCATC	4 cut(s)	80, 500, 514, 560
BceAI	ACGGC	2 cut(s)	201, 799
BclI	TGATCA	1 cut(s)	577
BcoDI	GTCTC	2 cut(s)	113, 452
BfaI	CTAG	2 cut(s)	465, 659
BisI	GCNGC	1 cut(s)	735
BlsI	GCNGC	1 cut(s)	736
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	3 cut(s)	650, 651, 662
BmiI	GGNNCC	3 cut(s)	652, 664, 733
BmsI	GCATC	2 cut(s)	196, 579
BpiI	GAAGAC	1 cut(s)	508
BpuEI	CTTGAG	1 cut(s)	33
BsaI	GGTCTC	2 cut(s)	113, 452
BsaJI	CCNNGG	2 cut(s)	610, 667
Bsc4I	CCNNNNNNNGG	3 cut(s)	659, 706, 774
BseDI	CCNNGG	2 cut(s)	610, 667
BseGI	GGATG	4 cut(s)	91, 241, 391, 552
BseLI	CCNNNNNNNGG	3 cut(s)	659, 706, 774
BseRI	GAGGAG	2 cut(s)	95, 500
BseSI	GKGCMC	2 cut(s)	408, 654
Bsh1236I	CGCG	1 cut(s)	737
Bsh1285I	CGRYCG	1 cut(s)	809
BshFI	GGCC	3 cut(s)	652, 663, 814
BsiEI	CGRYCG	1 cut(s)	809
BsiHKAI	GWGCWC	3 cut(s)	141, 174, 805
BsiHKCI	CYCGRG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	3 cut(s)	659, 706, 774
BsmAI	GTCTC	2 cut(s)	113, 452
BsmFI	GGGAC	1 cut(s)	659
BsnI	GGCC	3 cut(s)	652, 663, 814
Bso31I	GGTCTC	2 cut(s)	113, 452
BsoBI	CYCGRG	1 cut(s)	132
Bsp120I	GGGCCC	1 cut(s)	650
Bsp1286I	GDGCHC	5 cut(s)	141, 174, 408, 654, 805
Bsp143I	GATC	6 cut(s)	343, 442, 511, 577, 769, 806
Bsp19I	CCATGG	1 cut(s)	610
BspACI	CCGC	2 cut(s)	147, 735
BspANI	GGCC	3 cut(s)	652, 663, 814
BspFNI	CGCG	1 cut(s)	737
BspHI	TCATGA	2 cut(s)	202, 370
BspLI	GGNNCC	3 cut(s)	652, 664, 733
BspPI	GGATC	3 cut(s)	338, 437, 506
BspTNI	GGTCTC	2 cut(s)	113, 452
BssECI	CCNNGG	2 cut(s)	610, 667
BssMI	GATC	6 cut(s)	343, 442, 511, 577, 769, 806
BssSI	CACGAG	1 cut(s)	75
BssT1I	CCWWGG	2 cut(s)	610, 667
Bst2BI	CACGAG	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	690
BstDSI	CCRYGG	1 cut(s)	610
BstF5I	GGATG	4 cut(s)	91, 241, 391, 552
BstFNI	CGCG	1 cut(s)	737
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	6 cut(s)	346, 445, 514, 580, 772, 809
BstMAI	GTCTC	2 cut(s)	113, 452
BstMBI	GATC	6 cut(s)	343, 442, 511, 577, 769, 806
BstMCI	CGRYCG	1 cut(s)	809
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 412
BstNSI	RCATGY	1 cut(s)	545
BstSLI	GKGCMC	2 cut(s)	408, 654
BstUI	CGCG	1 cut(s)	737
BstV2I	GAAGAC	1 cut(s)	508
BstX2I	RGATCY	2 cut(s)	343, 442
BstYI	RGATCY	2 cut(s)	343, 442
BsuRI	GGCC	3 cut(s)	652, 663, 814
BtgI	CCRYGG	1 cut(s)	610
BtsCI	GGATG	4 cut(s)	91, 241, 391, 552
Cac8I	GCNNGC	1 cut(s)	72
CciI	TCATGA	2 cut(s)	202, 370
CfoI	GCGC	1 cut(s)	739
Cfr13I	GGNCC	3 cut(s)	650, 651, 662
CseI	GACGC	1 cut(s)	581
Csp6I	GTAC	2 cut(s)	285, 305
CviAII	CATG	8 cut(s)	203, 313, 371, 395, 427, 437, 542, 611
CviQI	GTAC	2 cut(s)	285, 305
DdeI	CTNAG	1 cut(s)	690
DpnI	GATC	6 cut(s)	345, 444, 513, 579, 771, 808
DpnII	GATC	6 cut(s)	343, 442, 511, 577, 769, 806
EaeI	YGGCCR	1 cut(s)	812
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	2 cut(s)	610, 667
Eco24I	GRGCYC	2 cut(s)	174, 654
Eco31I	GGTCTC	2 cut(s)	113, 452
Eco53kI	GAGCTC	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	172
EcoO109I	RGGNCCY	2 cut(s)	651, 662
EcoT14I	CCWWGG	2 cut(s)	610, 667
EcoT38I	GRGCYC	2 cut(s)	174, 654
ErhI	CCWWGG	2 cut(s)	610, 667
FaeI	CATG	8 cut(s)	206, 316, 374, 398, 430, 440, 545, 614
FaqI	GGGAC	1 cut(s)	659
FatI	CATG	8 cut(s)	202, 312, 370, 394, 426, 436, 541, 610
FauI	CCCGC	1 cut(s)	154
FauNDI	CATATG	1 cut(s)	582
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	1 cut(s)	735
FokI	GGATG	4 cut(s)	98, 248, 398, 539
FriOI	GRGCYC	2 cut(s)	174, 654
Fsp4HI	GCNGC	1 cut(s)	735
FspBI	CTAG	2 cut(s)	465, 659
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	1 cut(s)	735
HaeIII	GGCC	3 cut(s)	652, 663, 814
HgaI	GACGC	1 cut(s)	581
HhaI	GCGC	1 cut(s)	739
Hin1II	CATG	8 cut(s)	206, 316, 374, 398, 430, 440, 545, 614
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HincII	GTYRAC	3 cut(s)	197, 607, 797
HindII	GTYRAC	3 cut(s)	197, 607, 797
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	4 cut(s)	58, 362, 488, 672
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	4 cut(s)	197, 307, 607, 797
Hpy188I	TCNGA	2 cut(s)	511, 783
Hpy188III	TCNNGA	6 cut(s)	62, 77, 134, 175, 203, 371
Hpy8I	GTNNAC	4 cut(s)	197, 307, 607, 797
Hpy99I	CGWCG	2 cut(s)	597, 820
HpyAV	CCTTC	2 cut(s)	133, 525
HpyCH4IV	ACGT	2 cut(s)	563, 799
HpyCH4V	TGCA	3 cut(s)	209, 398, 600
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 412
HpyF3I	CTNAG	1 cut(s)	690
HpySE526I	ACGT	2 cut(s)	563, 799
Hsp92II	CATG	8 cut(s)	206, 316, 374, 398, 430, 440, 545, 614
HspAI	GCGC	1 cut(s)	737
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	6 cut(s)	343, 442, 511, 577, 769, 806
LmnI	GCTCC	2 cut(s)	136, 731
LpnPI	CCDG	2 cut(s)	47, 775
LweI	GCATC	2 cut(s)	196, 579
MaeI	CTAG	2 cut(s)	465, 659
MaeII	ACGT	2 cut(s)	563, 799
MalI	GATC	6 cut(s)	345, 444, 513, 579, 771, 808
MboI	GATC	6 cut(s)	343, 442, 511, 577, 769, 806
MboII	GAAGA	5 cut(s)	353, 386, 452, 513, 764
MflI	RGATCY	2 cut(s)	343, 442
MhlI	GDGCHC	5 cut(s)	141, 174, 408, 654, 805
MluCI	AATT	2 cut(s)	10, 24
MlyI	GAGTC	2 cut(s)	497, 681
MseI	TTAA	2 cut(s)	27, 479
MslI	CAYNNNNRTG	2 cut(s)	399, 684
MvnI	CGCG	1 cut(s)	737
MwoI	GCNNNNNNNGC	2 cut(s)	38, 412
NcoI	CCATGG	1 cut(s)	610
NdeI	CATATG	1 cut(s)	582
NdeII	GATC	6 cut(s)	343, 442, 511, 577, 769, 806
NlaIII	CATG	8 cut(s)	206, 316, 374, 398, 430, 440, 545, 614
NlaIV	GGNNCC	3 cut(s)	652, 664, 733
NmeAIII	GCCGAG	1 cut(s)	765
NspI	RCATGY	1 cut(s)	545
OliI	CACNNNNGTG	1 cut(s)	684
PagI	TCATGA	2 cut(s)	202, 370
PciI	ACATGT	1 cut(s)	541
PcsI	WCGNNNNNNNCGW	1 cut(s)	815
PfeI	GAWTC	2 cut(s)	58, 362
PkrI	GCNGC	1 cut(s)	736
Ple19I	CGATCG	1 cut(s)	809
PleI	GAGTC	2 cut(s)	496, 680
PpsI	GAGTC	2 cut(s)	496, 680
PscI	ACATGT	1 cut(s)	541
Psp124BI	GAGCTC	1 cut(s)	174
Psp1406I	AACGTT	1 cut(s)	563
PspN4I	GGNNCC	3 cut(s)	652, 664, 733
PspOMI	GGGCCC	1 cut(s)	650
PspPI	GGNCC	3 cut(s)	650, 651, 662
PsuI	RGATCY	2 cut(s)	343, 442
PvuI	CGATCG	1 cut(s)	809
RsaI	GTAC	2 cut(s)	286, 306
RsaNI	GTAC	2 cut(s)	285, 305
RseI	CAYNNNNRTG	2 cut(s)	399, 684
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	27, 479
SatI	GCNGC	1 cut(s)	735
Sau3AI	GATC	6 cut(s)	343, 442, 511, 577, 769, 806
Sau96I	GGNCC	3 cut(s)	650, 651, 662
SchI	GAGTC	2 cut(s)	497, 681
SduI	GDGCHC	5 cut(s)	141, 174, 408, 654, 805
SfaNI	GCATC	2 cut(s)	196, 579
SmiMI	CAYNNNNRTG	2 cut(s)	399, 684
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	2 cut(s)	10, 24
SsiI	CCGC	2 cut(s)	147, 735
SspMI	CTAG	2 cut(s)	465, 659
SstI	GAGCTC	1 cut(s)	174
StyI	CCWWGG	2 cut(s)	610, 667
TaiI	ACGT	2 cut(s)	566, 802
TaqI	TCGA	2 cut(s)	176, 805
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	2 cut(s)	10, 24
TatI	WGTACW	1 cut(s)	304
TauI	GCSGC	1 cut(s)	737
TfiI	GAWTC	2 cut(s)	58, 362
Tru1I	TTAA	2 cut(s)	27, 479
Tru9I	TTAA	2 cut(s)	27, 479
TspDTI	ATGAA	6 cut(s)	115, 252, 315, 383, 387, 453
TspGWI	ACGGA	1 cut(s)	692
XceI	RCATGY	1 cut(s)	545
XspI	CTAG	2 cut(s)	465, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.