Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Forward (+)

36667027 .. 36671533

Gene Structure 4507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00414360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGCTTGGAGGATTTCAAGACAACCAAGGGCATTGGAATAATTACTATTCACCTCGATACAATCCGTCATGTAATAATTCTTCTTATTTTGCGTGGAACAATGATCCAAACATGCAACATGGATCTTTCAATGAGTTTGAAGCTTCTCCATATTCATACCATGACTATTGGCCACAAGCACCACCTCCTCAAAACTCAGGTATGTCTAATAATTATGATGAGATTATTAAGGAACTAAATGCTGCTACTCAAGCTTTGATTCAGGGACAACAAGCTTTGGATGCTTCTATTCAGCAAGCTTGTGAGGGTGATGATGCTTGGGCAGAAACTCAAAGTCGTTGGGAGACCTTTATATCTCAAGAGCACCCTTCTAAACCGATGACACCTTTAGGAGAGCTCTCAACAACTACGGCTTTGTGTCAACCTCATGATGCAGTCCATGATTCAACATTTGATGACGAAGAAGTAATGGATTTGGAGGAGTCTTATAAAGAGCAACTCAATGGTGATAATTGTGAGGATCCCGAAGTATGCTACATAACCGAGCTTGGAAAGTGGGAAATGGAAGACCCTTTTGATGATGAGGAACCCTACAACATGGGTACTAAAGATGAGCTTCATGCAAATGTGTTCCAAGTGCCTGAAATAATCATGTTACCTCATGAAGATCCAAAAGGTTATGAGGCCACGAGAGATGATTGCGTAAAAGAGAAGTCCATCAAAGCTCCTACATTTGGACCTTTATTGCTAGCACATGGAAGACCACCTGATCCTTCAACACCTCATTCAAGTTCTACACAAGTTCTCCACATCAAAGCAACGTTTGAGTTTGTTGATCATATGGAGATGGTGATAAGTGAATATCTCAAATCACATAAGGAGATCATTCTAGTCGTGATTGTTGAACTTAAGAAAAGAAGGAGACAATGGAAGAAGAGAAAGAAAAAGAGAAGCATCAAATTCTATCTTTCCATTGCTCCCAAGTTACCCAAGTTGCTAGCCAGGCACCATGAAACATCTTTGAAGAGGCTTAAGCATCCGATCGAACCTCGGCCTAAACCTCCCCGATTACTCTTGATGAAGAGCTGCTATGTCGGCCGAAAGACTTTAAATTTAAGCGCTTCTTGGGAGGCAACCCAAAACATCTCATCCATCGGGGCATCCCTGCAGAAGTTAGAAGGGCTAGAAGTTGGCCTCATGACGAGAGAAAGTGAAGTTAGAAAATGCACTTTTCGTTCTCTCTCATTTTCAACCCATCATCACTTCTTTTGGAGTCCATATAGCACAGAGCTTATGTTAGGAAGTCAAGACCTTCTGGTCTTGAGGTTGGGGTCTTTGTTGTCATCTCCAAAAGTCAAGTTTGTTGATCATTATAGAAGATATGATGTCATAGATCACGTGGGAGTCAAGAATCATCCAGAAACTTGGCAAAACGAAGTCGTTCCTTGTCCAAGAAGGAAGCTTCGAGAGACAGAAATTGAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

495

Amino Acids

57.04

Weight (kDa)

5.83

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	489
AasI	GACNNNNNNGTC	1 cut(s)	1316
AccB1I	GGYRCC	1 cut(s)	1005
AclI	AACGTT	1 cut(s)	821
AclWI	GGATC	6 cut(s)	98, 130, 515, 528, 662, 764
AcoI	YGGCCR	2 cut(s)	170, 1096
AcsI	RAATTY	2 cut(s)	959, 1111
AcvI	CACGTG	1 cut(s)	1399
AfaI	GTAC	1 cut(s)	604
AfeI	AGCGCT	1 cut(s)	1120
AfiI	CCNNNNNNNGG	1 cut(s)	734
AflII	CTTAAG	2 cut(s)	908, 1031
AjnI	CCWGG	1 cut(s)	1001
Alw21I	GWGCWC	2 cut(s)	366, 399
Alw26I	GTCTC	3 cut(s)	338, 916, 1463
AlwI	GGATC	6 cut(s)	98, 130, 515, 528, 662, 764
Aor51HI	AGCGCT	1 cut(s)	1120
AoxI	GGCC	5 cut(s)	170, 684, 1052, 1096, 1192
ApeKI	GCWGC	2 cut(s)	242, 1086
ApoI	RAATTY	2 cut(s)	959, 1111
Asp700I	GAANNNNTTC	1 cut(s)	1440
AspLEI	GCGC	1 cut(s)	1121
AspS9I	GGNCC	1 cut(s)	737
AsuHPI	GGTGA	4 cut(s)	42, 320, 518, 862
AsuNHI	GCTAGC	2 cut(s)	748, 997
AvaII	GGWCC	1 cut(s)	737
BalI	TGGCCA	1 cut(s)	172
BamHI	GGATCC	1 cut(s)	520
BanI	GGYRCC	1 cut(s)	1005
BanII	GRGCYC	1 cut(s)	399
BarI	GAAGNNNNNNTAC	2 cut(s)	64, 96
BauI	CACGAG	1 cut(s)	688
BbrPI	CACGTG	1 cut(s)	1399
BbsI	GAAGAC	2 cut(s)	573, 766
Bbv12I	GWGCWC	2 cut(s)	366, 399
BbvI	GCAGC	2 cut(s)	229, 1073
BccI	CCATC	4 cut(s)	725, 841, 1160, 1263
BceAI	ACGGC	1 cut(s)	426
BciT130I	CCWGG	1 cut(s)	1003
BclI	TGATCA	2 cut(s)	835, 1366
BcoDI	GTCTC	3 cut(s)	338, 916, 1463
BfaI	CTAG	5 cut(s)	749, 890, 998, 1184, 1486
BfmI	CTRYAG	1 cut(s)	1166
BfoI	RGCGCY	1 cut(s)	1122
BfrI	CTTAAG	2 cut(s)	908, 1031
BisI	GCNGC	2 cut(s)	243, 1087
BlsI	GCNGC	2 cut(s)	244, 1088
Bme1390I	CCNGG	1 cut(s)	1003
Bme18I	GGWCC	1 cut(s)	737
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	3 cut(s)	522, 588, 1007
BmrFI	CCNGG	1 cut(s)	1003
BmsI	GCATC	6 cut(s)	271, 304, 421, 963, 1045, 1169
BmtI	GCTAGC	2 cut(s)	752, 1001
BpiI	GAAGAC	2 cut(s)	573, 766
BpuEI	CTTGAG	3 cut(s)	234, 342, 1342
BsaAI	YACGTR	1 cut(s)	1399
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	25, 1049
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	1 cut(s)	734
Bse3DI	GCAATG	1 cut(s)	972
BseBI	CCWGG	1 cut(s)	1003
BseDI	CCNNGG	2 cut(s)	25, 1049
BseGI	GGATG	5 cut(s)	286, 1036, 1148, 1160, 1414
BseLI	CCNNNNNNNGG	1 cut(s)	734
BseMI	GCAATG	1 cut(s)	972
BseMII	CTCAG	1 cut(s)	210
BseRI	GAGGAG	2 cut(s)	177, 494
BseX3I	CGGCCG	1 cut(s)	1096
BseXI	GCAGC	2 cut(s)	229, 1073
Bsh1285I	CGRYCG	2 cut(s)	1044, 1099
BshFI	GGCC	5 cut(s)	172, 686, 1054, 1098, 1194
BshNI	GGYRCC	1 cut(s)	1005
BsiEI	CGRYCG	2 cut(s)	1044, 1099
BsiHKAI	GWGCWC	2 cut(s)	366, 399
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	734
BsmAI	GTCTC	3 cut(s)	338, 916, 1463
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	5 cut(s)	172, 686, 1054, 1098, 1194
Bso31I	GGTCTC	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	366, 399
BspANI	GGCC	5 cut(s)	172, 686, 1054, 1098, 1194
BspCNI	CTCAG	1 cut(s)	209
BspHI	TCATGA	3 cut(s)	427, 661, 1197
BspLI	GGNNCC	3 cut(s)	522, 588, 1007
BspMAI	CTGCAG	1 cut(s)	1170
BspOI	GCTAGC	2 cut(s)	752, 1001
BspPI	GGATC	6 cut(s)	98, 130, 515, 528, 662, 764
BspQI	GCTCTTC	1 cut(s)	1076
BspT107I	GGYRCC	1 cut(s)	1005
BspTI	CTTAAG	2 cut(s)	908, 1031
BspTNI	GGTCTC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	972
BssECI	CCNNGG	2 cut(s)	25, 1049
BssSI	CACGAG	1 cut(s)	688
BssT1I	CCWWGG	1 cut(s)	25
Bst2BI	CACGAG	1 cut(s)	688
Bst2UI	CCWGG	1 cut(s)	1003
Bst6I	CTCTTC	3 cut(s)	929, 1019, 1076
BstAFI	CTTAAG	2 cut(s)	908, 1031
BstBAI	YACGTR	1 cut(s)	1399
BstC8I	GCNNGC	3 cut(s)	297, 750, 999
BstDEI	CTNAG	1 cut(s)	196
BstF5I	GGATG	5 cut(s)	286, 1036, 1148, 1160, 1414
BstH2I	RGCGCY	1 cut(s)	1122
BstHHI	GCGC	1 cut(s)	1121
BstMAI	GTCTC	3 cut(s)	338, 916, 1463
BstMCI	CGRYCG	2 cut(s)	1044, 1099
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 281, 1003, 1095
BstNI	CCWGG	1 cut(s)	1003
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	1001
BstSFI	CTRYAG	1 cut(s)	1166
BstV1I	GCAGC	2 cut(s)	229, 1073
BstV2I	GAAGAC	2 cut(s)	573, 766
BstX2I	RGATCY	3 cut(s)	122, 520, 667
BstXI	CCANNNNNNTGG	1 cut(s)	1425
BstYI	RGATCY	3 cut(s)	122, 520, 667
BstZI	CGGCCG	1 cut(s)	1096
BsuRI	GGCC	5 cut(s)	172, 686, 1054, 1098, 1194
BtsCI	GGATG	5 cut(s)	286, 1036, 1148, 1160, 1414
Cac8I	GCNNGC	3 cut(s)	297, 750, 999
CciI	TCATGA	3 cut(s)	427, 661, 1197
CfoI	GCGC	1 cut(s)	1121
Cfr13I	GGNCC	1 cut(s)	737
Csp6I	GTAC	1 cut(s)	603
CviQI	GTAC	1 cut(s)	603
DdeI	CTNAG	1 cut(s)	196
DraI	TTTAAA	1 cut(s)	1110
DrdI	GACNNNNNNGTC	1 cut(s)	1316
DseDI	GACNNNNNNGTC	1 cut(s)	1316
EaeI	YGGCCR	2 cut(s)	170, 1096
EagI	CGGCCG	1 cut(s)	1096
Eam1104I	CTCTTC	3 cut(s)	929, 1019, 1076
EarI	CTCTTC	3 cut(s)	929, 1019, 1076
Ecl136II	GAGCTC	1 cut(s)	397
EclXI	CGGCCG	1 cut(s)	1096
Eco130I	CCWWGG	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	737
Eco47III	AGCGCT	1 cut(s)	1120
Eco52I	CGGCCG	1 cut(s)	1096
Eco53kI	GAGCTC	1 cut(s)	397
Eco72I	CACGTG	1 cut(s)	1399
EcoICRI	GAGCTC	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	1001
EcoT14I	CCWWGG	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	25
FalI	AAGNNNNNCTT	4 cut(s)	600, 632, 1108, 1140
FaqI	GGGAC	1 cut(s)	279
FauNDI	CATATG	1 cut(s)	840
FbaI	TGATCA	2 cut(s)	835, 1366
Fnu4HI	GCNGC	2 cut(s)	243, 1087
FokI	GGATG	5 cut(s)	293, 1023, 1135, 1147, 1401
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	2 cut(s)	243, 1087
FspBI	CTAG	5 cut(s)	749, 890, 998, 1184, 1486
GlaI	GCGC	1 cut(s)	1120
GluI	GCNGC	2 cut(s)	243, 1087
HaeII	RGCGCY	1 cut(s)	1122
HaeIII	GGCC	5 cut(s)	172, 686, 1054, 1098, 1194
HhaI	GCGC	1 cut(s)	1121
Hin6I	GCGC	1 cut(s)	1119
HinP1I	GCGC	1 cut(s)	1119
HincII	GTYRAC	1 cut(s)	422
HindII	GTYRAC	1 cut(s)	422
HindIII	AAGCTT	5 cut(s)	141, 252, 273, 297, 1460
HinfI	GANTC	7 cut(s)	259, 443, 482, 1273, 1404, 1411, 1481
HphI	GGTGA	4 cut(s)	42, 320, 518, 862
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	1 cut(s)	1041
Hpy8I	GTNNAC	1 cut(s)	422
HpyAV	CCTTC	6 cut(s)	378, 783, 912, 1172, 1322, 1449
HpyCH4IV	ACGT	2 cut(s)	821, 1398
HpyCH4V	TGCA	5 cut(s)	115, 434, 623, 1168, 1227
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 281, 1003, 1095
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	2 cut(s)	821, 1398
HspAI	GCGC	1 cut(s)	1119
Ksp22I	TGATCA	2 cut(s)	835, 1366
LguI	GCTCTTC	1 cut(s)	1076
LmnI	GCTCC	2 cut(s)	730, 982
LpnPI	CCDG	9 cut(s)	183, 248, 654, 780, 988, 1015, 1178, 1301, 1431
Lsp1109I	GCAGC	2 cut(s)	229, 1073
LweI	GCATC	6 cut(s)	271, 304, 421, 963, 1045, 1169
MaeI	CTAG	5 cut(s)	749, 890, 998, 1184, 1486
MaeII	ACGT	2 cut(s)	821, 1398
MaeIII	GTNAC	2 cut(s)	654, 984
MflI	RGATCY	3 cut(s)	122, 520, 667
MhlI	GDGCHC	2 cut(s)	366, 399
MlsI	TGGCCA	1 cut(s)	172
MluCI	AATT	7 cut(s)	40, 76, 211, 511, 959, 1111, 1476
MluNI	TGGCCA	1 cut(s)	172
MlyI	GAGTC	3 cut(s)	491, 1282, 1413
Mox20I	TGGCCA	1 cut(s)	172
MroXI	GAANNNNTTC	1 cut(s)	1440
MscI	TGGCCA	1 cut(s)	172
MseI	TTAA	5 cut(s)	228, 909, 1032, 1109, 1115
MslI	CAYNNNNRTG	1 cut(s)	624
Msp20I	TGGCCA	1 cut(s)	172
MspCI	CTTAAG	2 cut(s)	908, 1031
MspR9I	CCNGG	1 cut(s)	1003
MvaI	CCWGG	1 cut(s)	1003
MwoI	GCNNNNNNNGC	4 cut(s)	251, 281, 1003, 1095
NdeI	CATATG	1 cut(s)	840
NheI	GCTAGC	2 cut(s)	748, 997
NlaIV	GGNNCC	3 cut(s)	522, 588, 1007
NmeAIII	GCCGAG	1 cut(s)	1030
NspI	RCATGY	1 cut(s)	115
PagI	TCATGA	3 cut(s)	427, 661, 1197
PciSI	GCTCTTC	1 cut(s)	1076
PdmI	GAANNNNTTC	1 cut(s)	1440
PfeI	GAWTC	4 cut(s)	259, 443, 1411, 1481
PkrI	GCNGC	2 cut(s)	244, 1088
Ple19I	CGATCG	1 cut(s)	1044
PleI	GAGTC	3 cut(s)	490, 1281, 1412
PmaCI	CACGTG	1 cut(s)	1399
PmlI	CACGTG	1 cut(s)	1399
PpsI	GAGTC	3 cut(s)	490, 1281, 1412
Ppu21I	YACGTR	1 cut(s)	1399
PsiI	TTATAA	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	399
Psp1406I	AACGTT	1 cut(s)	821
Psp6I	CCWGG	1 cut(s)	1001
PspCI	CACGTG	1 cut(s)	1399
PspGI	CCWGG	1 cut(s)	1001
PspN4I	GGNNCC	3 cut(s)	522, 588, 1007
PspPI	GGNCC	1 cut(s)	737
PstI	CTGCAG	1 cut(s)	1170
PsuI	RGATCY	3 cut(s)	122, 520, 667
PvuI	CGATCG	1 cut(s)	1044
RsaI	GTAC	1 cut(s)	604
RsaNI	GTAC	1 cut(s)	603
RseI	CAYNNNNRTG	1 cut(s)	624
SacI	GAGCTC	1 cut(s)	399
SapI	GCTCTTC	1 cut(s)	1076
SaqAI	TTAA	5 cut(s)	228, 909, 1032, 1109, 1115
SatI	GCNGC	2 cut(s)	243, 1087
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	3 cut(s)	491, 1282, 1413
ScrFI	CCNGG	1 cut(s)	1003
SduI	GDGCHC	2 cut(s)	366, 399
SfaNI	GCATC	6 cut(s)	271, 304, 421, 963, 1045, 1169
SfcI	CTRYAG	1 cut(s)	1166
SinI	GGWCC	1 cut(s)	737
SmiMI	CAYNNNNRTG	1 cut(s)	624
SmlI	CTYRAG	5 cut(s)	249, 357, 908, 1031, 1321
SmoI	CTYRAG	5 cut(s)	249, 357, 908, 1031, 1321
Sse9I	AATT	7 cut(s)	40, 76, 211, 511, 959, 1111, 1476
SspMI	CTAG	5 cut(s)	749, 890, 998, 1184, 1486
SstI	GAGCTC	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	1001
StyI	CCWWGG	1 cut(s)	25
TaiI	ACGT	2 cut(s)	824, 1401
TaqI	TCGA	3 cut(s)	55, 1044, 1465
TasI	AATT	7 cut(s)	40, 76, 211, 511, 959, 1111, 1476
TfiI	GAWTC	4 cut(s)	259, 443, 1411, 1481
Tru1I	TTAA	5 cut(s)	228, 909, 1032, 1109, 1115
Tru9I	TTAA	5 cut(s)	228, 909, 1032, 1109, 1115
TseI	GCWGC	2 cut(s)	242, 1086
TspDTI	ATGAA	5 cut(s)	144, 608, 678, 1026, 1094
TspGWI	ACGGA	1 cut(s)	54
Vha464I	CTTAAG	2 cut(s)	908, 1031
VpaK11BI	GGWCC	1 cut(s)	737
XapI	RAATTY	2 cut(s)	959, 1111
XceI	RCATGY	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	1440
XspI	CTAG	5 cut(s)	749, 890, 998, 1184, 1486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.