Rroxscaffold_3G00224850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001602
Physical Location & Seq
Forward (+)
8101533 .. 8101805
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00224850.1

Sequence Viewer

Length: 273 bp
ATGGCAACTTTGGGGGAGCTCTCGGCAGCTGTGGCTTTGTGTCAACCTCATAATGCATTCCATGATTTAACATTTGATGAGGACGTAGTAAGAGATTTGGGGGAATCTTATAAAGAGCAACTCAATGTTGAGACTCGTGAGGATTATGAAGTACACTACATGACCGAGCTTGACAAGTGGGAAATGGAAGATCTCTTTGATGATGAGGAACCCTACAATGAAGAAAGTAAAGATGAGCTTCATGCAAATGTGTGCACAAGTGCACTGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.46

Weight (kDa)

4.12

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 111
AfaI GTAC 1 cut(s) 153
AluBI AGCT 4 cut(s) 19, 29, 169, 238
AluI AGCT 4 cut(s) 19, 29, 169, 238
Alw21I GWGCWC 3 cut(s) 21, 257, 265
Alw26I GTCTC 1 cut(s) 125
Alw44I GTGCAC 2 cut(s) 253, 261
ApaLI GTGCAC 2 cut(s) 253, 261
ApeKI GCWGC 1 cut(s) 26
BaeGI GKGCMC 2 cut(s) 257, 265
BanII GRGCYC 1 cut(s) 21
BauI CACGAG 1 cut(s) 135
Bbv12I GWGCWC 3 cut(s) 21, 257, 265
BbvI GCAGC 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 125
BglII AGATCT 1 cut(s) 190
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 210
BseSI GKGCMC 2 cut(s) 257, 265
BseXI GCAGC 1 cut(s) 38
BsiHKAI GWGCWC 3 cut(s) 21, 257, 265
BsmAI GTCTC 1 cut(s) 125
BsmI GAATGC 1 cut(s) 56
Bsp1286I GDGCHC 3 cut(s) 21, 257, 265
Bsp143I GATC 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 210
BssMI GATC 1 cut(s) 190
BssSI CACGAG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 135
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstSLI GKGCMC 2 cut(s) 257, 265
BstV1I GCAGC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 263
Csp6I GTAC 1 cut(s) 152
CviAII CATG 3 cut(s) 62, 160, 242
CviJI RGCY 5 cut(s) 19, 29, 35, 169, 238
CviKI_1 RGCY 5 cut(s) 19, 29, 35, 169, 238
CviQI GTAC 1 cut(s) 152
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 19
EcoICRI GAGCTC 1 cut(s) 19
EcoT22I ATGCAT 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 3 cut(s) 65, 163, 245
FaiI YATR 6 cut(s) 51, 63, 111, 147, 161, 243
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FatI CATG 3 cut(s) 61, 159, 241
Fnu4HI GCNGC 1 cut(s) 27
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
Hin1II CATG 3 cut(s) 65, 163, 245
HincII GTYRAC 1 cut(s) 44
HindII GTYRAC 1 cut(s) 44
HinfI GANTC 2 cut(s) 104, 133
Hpy166II GTNNAC 4 cut(s) 44, 154, 255, 263
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 4 cut(s) 44, 154, 255, 263
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 4 cut(s) 56, 245, 255, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 3 cut(s) 65, 163, 245
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 1 cut(s) 38
MaeII ACGT 1 cut(s) 84
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 2 cut(s) 200, 233
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 3 cut(s) 21, 257, 265
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 4 cut(s) 57, 73, 133, 199
Mph1103I ATGCAT 1 cut(s) 58
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 246
MspA1I CMGCKG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeII GATC 1 cut(s) 190
NlaIII CATG 3 cut(s) 65, 163, 245
NlaIV GGNNCC 1 cut(s) 210
NsiI ATGCAT 1 cut(s) 58
PctI GAATGC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PsiI TTATAA 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 210
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 246
SacI GAGCTC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 1 cut(s) 127
SduI GDGCHC 3 cut(s) 21, 257, 265
SetI ASST 6 cut(s) 21, 31, 49, 87, 171, 240
SgeI CNNG 9 cut(s) 34, 74, 147, 149, 172, 178, 182, 187, 254
SmiMI CAYNNNNRTG 1 cut(s) 246
SstI GAGCTC 1 cut(s) 21
TaiI ACGT 1 cut(s) 87
TaqII GACCGA 1 cut(s) 179
TatI WGTACW 1 cut(s) 151
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 270
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 3 cut(s) 162, 230, 234
TspRI CASTG 1 cut(s) 270
VneI GTGCAC 2 cut(s) 253, 261
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.