Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Forward (+)

62263654 .. 62268848

Gene Structure 5195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTCATGTGGCATCAATCTTACAAGGTGTGTTCCATATGCTCCATGGTTGGTCATTCAGCGGAGACATGTACAAGCATCCGGTATGAAGGATACTATGGTCAAAATACCATGCTTGGAGGATTTCAAGACAACCCAAGGGCATTGGAATAATTACTATTCACCTCCATACAGTCCAGCATGGGATAACTCTCCATATTCTTCATGGAACAACAATCCAAAAATGCAGCAAGGATCTTTCAATGCGTTTGATGCTTCCCTATGTTCATACCATGATTATAGGCCACAAGCACCTCCACCTGAAAACTCAGAACAGCAAGCTTTGGATGCTTCTATACAGCGAGCTTGTGAGAATGGTGATGATTGGGCAGAAACTCAAAGGCGTTGGGAGACCTTTATATCTCAAGAGCACCCTTCTACACTAATGGTAACTTTAGAGGAGTTCCCAACAACTACGGCTTTGGATCAACCTCAAGATGCATTCAATGATTCAAGCTATGATGAGGATGAAATAAGGGATTTGGATGAGTCTTATGAAGAGCAACGCAATATCGAGACATGTGAGGACTACGAACTATGTTGCATAACCGAGCTTGAAAAATGGGAAATGGAAGATCCCTTTGATGATGATGATGATGATGAATCCTATCATGGAGGAAGTAAGGATGAGCTTCATGCAAATGTGTCCCAAGTGCCCCCGAAACAATCATGTTACCCTTATGAAGATCCAAAATGTTACGAGACCACAATGGAGGATTGCTTAAAAGAGGAGTCCATCAAGGCTTCTACATTTGGACTTTTATTGCTGGCACATGGAAGACCACATGATTCTTCAGCGCCTCATTCAAGCTCTACACATGTTCTCCCCATCCAAGCAACGTTTGAGTTTGTTGATCATGCGGAGATGGTGATATGTAAGCACCTCAAATCTGATAAGGAGGTCATTCTTGCCATTGGCCGAGATTGCGTCCAGGAACTAGAGGCTTTGGAATTGGCGCTTTCGTTTTTTGTCCGTAGCCTCTGGACATGGCTTTATTATCGCTATGCTAACATCGGTGGCTACAAACATCTTGTTACTTCTGCTTATGTTCTTTCGCCCTCCGCTCTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

370

Amino Acids

42.47

Weight (kDa)

4.49

Isoelectric Point (pI)

59.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1103
AciI	CCGC	3 cut(s)	61, 899, 1101
AclI	AACGTT	1 cut(s)	878
AclWI	GGATC	4 cut(s)	241, 471, 608, 719
AcoI	YGGCCR	1 cut(s)	955
AcuI	CTGAAG	1 cut(s)	816
AfaI	GTAC	1 cut(s)	72
AflIII	ACRYGT	3 cut(s)	67, 557, 856
AgsI	TTSAA	6 cut(s)	127, 241, 484, 492, 596, 846
AjnI	CCWGG	1 cut(s)	969
AluBI	AGCT	6 cut(s)	320, 344, 495, 592, 670, 849
AluI	AGCT	6 cut(s)	320, 344, 495, 592, 670, 849
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	4 cut(s)	58, 383, 548, 734
AlwI	GGATC	4 cut(s)	241, 471, 608, 719
AoxI	GGCC	2 cut(s)	281, 955
ApeKI	GCWGC	1 cut(s)	226
AspLEI	GCGC	2 cut(s)	838, 997
AsuHPI	GGTGA	3 cut(s)	153, 368, 919
BaeGI	GKGCMC	1 cut(s)	696
BaeI	ACNNNNGTAYC	2 cut(s)	84, 117
BbsI	GAAGAC	1 cut(s)	823
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	3 cut(s)	782, 875, 898
BceAI	ACGGC	1 cut(s)	471
BciT130I	CCWGG	1 cut(s)	971
BciVI	GTATCC	1 cut(s)	85
BclI	TGATCA	1 cut(s)	892
BcoDI	GTCTC	4 cut(s)	58, 383, 548, 734
BfaI	CTAG	1 cut(s)	977
BfoI	RGCGCY	2 cut(s)	839, 998
BfuI	GTATCC	1 cut(s)	85
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	971
BmrFI	CCNGG	1 cut(s)	971
BmsI	GCATC	5 cut(s)	21, 86, 241, 316, 466
BpiI	GAAGAC	1 cut(s)	823
BpuEI	CTTGAG	2 cut(s)	387, 456
BsaI	GGTCTC	2 cut(s)	383, 734
BsaJI	CCNNGG	2 cut(s)	44, 136
BsaWI	WCCGGW	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	846, 876
BseBI	CCWGG	1 cut(s)	971
BseDI	CCNNGG	2 cut(s)	44, 136
BseGI	GGATG	6 cut(s)	77, 331, 511, 529, 670, 867
BseMII	CTCAG	1 cut(s)	321
BseRI	GAGGAG	2 cut(s)	452, 782
BseSI	GKGCMC	1 cut(s)	696
BseXI	GCAGC	1 cut(s)	238
BshFI	GGCC	2 cut(s)	283, 957
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	670
BsmAI	GTCTC	4 cut(s)	58, 383, 548, 734
BsmFI	GGGAC	1 cut(s)	670
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	2 cut(s)	283, 957
Bso31I	GGTCTC	2 cut(s)	383, 734
Bsp1286I	GDGCHC	2 cut(s)	411, 696
Bsp1407I	TGTACA	1 cut(s)	70
Bsp143I	GATC	5 cut(s)	233, 463, 613, 724, 892
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	3 cut(s)	61, 899, 1101
BspANI	GGCC	2 cut(s)	283, 957
BspCNI	CTCAG	1 cut(s)	320
BspPI	GGATC	4 cut(s)	241, 471, 608, 719
BspQI	GCTCTTC	1 cut(s)	531
BspTNI	GGTCTC	2 cut(s)	383, 734
BsrBI	CCGCTC	1 cut(s)	1103
BsrGI	TGTACA	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	44, 136
BssMI	GATC	5 cut(s)	233, 463, 613, 724, 892
BssT1I	CCWWGG	2 cut(s)	44, 136
Bst2UI	CCWGG	1 cut(s)	971
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	531
BstAUI	TGTACA	1 cut(s)	70
BstC8I	GCNNGC	3 cut(s)	318, 342, 807
BstDEI	CTNAG	1 cut(s)	307
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	6 cut(s)	77, 331, 511, 529, 670, 867
BstH2I	RGCGCY	2 cut(s)	839, 998
BstHHI	GCGC	2 cut(s)	838, 997
BstKTI	GATC	5 cut(s)	236, 466, 616, 727, 895
BstMAI	GTCTC	4 cut(s)	58, 383, 548, 734
BstMBI	GATC	5 cut(s)	233, 463, 613, 724, 892
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 326, 963
BstNI	CCWGG	1 cut(s)	971
BstNSI	RCATGY	3 cut(s)	71, 561, 860
BstSCI	CCNGG	1 cut(s)	969
BstSLI	GKGCMC	1 cut(s)	696
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	1 cut(s)	823
BstX2I	RGATCY	3 cut(s)	233, 613, 724
BstYI	RGATCY	3 cut(s)	233, 613, 724
BsuI	GTATCC	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	283, 957
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	6 cut(s)	77, 331, 511, 529, 670, 867
Cac8I	GCNNGC	3 cut(s)	318, 342, 807
CfoI	GCGC	2 cut(s)	838, 997
CseI	GACGC	1 cut(s)	955
Csp6I	GTAC	1 cut(s)	71
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	1 cut(s)	307
DpnI	GATC	5 cut(s)	235, 465, 615, 726, 894
DpnII	GATC	5 cut(s)	233, 463, 613, 724, 892
EaeI	YGGCCR	1 cut(s)	955
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco130I	CCWWGG	2 cut(s)	44, 136
Eco31I	GGTCTC	2 cut(s)	383, 734
Eco57I	CTGAAG	1 cut(s)	816
EcoRII	CCWGG	1 cut(s)	969
EcoT14I	CCWWGG	2 cut(s)	44, 136
EcoT22I	ATGCAT	1 cut(s)	481
ErhI	CCWWGG	2 cut(s)	44, 136
FaqI	GGGAC	1 cut(s)	670
FauNDI	CATATG	1 cut(s)	37
FbaI	TGATCA	1 cut(s)	892
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	6 cut(s)	64, 338, 518, 536, 677, 854
Fsp4HI	GCNGC	1 cut(s)	227
FspBI	CTAG	1 cut(s)	977
GlaI	GCGC	2 cut(s)	837, 996
GluI	GCNGC	1 cut(s)	227
HaeII	RGCGCY	2 cut(s)	839, 998
HaeIII	GGCC	2 cut(s)	283, 957
HapII	CCGG	1 cut(s)	81
HgaI	GACGC	1 cut(s)	955
HhaI	GCGC	2 cut(s)	838, 997
Hin6I	GCGC	2 cut(s)	836, 995
HinP1I	GCGC	2 cut(s)	836, 995
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	5 cut(s)	488, 527, 641, 770, 827
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	3 cut(s)	153, 368, 919
Hpy188I	TCNGA	2 cut(s)	310, 931
Hpy188III	TCNNGA	5 cut(s)	127, 404, 473, 553, 1021
HpyAV	CCTTC	2 cut(s)	82, 423
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	1 cut(s)	878
HpyCH4V	TGCA	4 cut(s)	226, 479, 582, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 326, 963
HpyF3I	CTNAG	1 cut(s)	307
HpySE526I	ACGT	1 cut(s)	878
HspAI	GCGC	2 cut(s)	836, 995
Ksp22I	TGATCA	1 cut(s)	892
Kzo9I	GATC	5 cut(s)	233, 463, 613, 724, 892
LguI	GCTCTTC	1 cut(s)	531
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	7 cut(s)	94, 189, 312, 791, 956, 983, 1006
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	5 cut(s)	21, 86, 241, 316, 466
MaeI	CTAG	1 cut(s)	977
MaeII	ACGT	1 cut(s)	878
MaeIII	GTNAC	4 cut(s)	427, 710, 734, 1072
MalI	GATC	5 cut(s)	235, 465, 615, 726, 894
MbiI	CCGCTC	1 cut(s)	1103
MboI	GATC	5 cut(s)	233, 463, 613, 724, 892
MboII	GAAGA	6 cut(s)	192, 548, 623, 734, 822, 828
MflI	RGATCY	3 cut(s)	233, 613, 724
MhlI	GDGCHC	2 cut(s)	411, 696
MluCI	AATT	2 cut(s)	151, 989
MlyI	GAGTC	2 cut(s)	536, 779
Mph1103I	ATGCAT	1 cut(s)	481
MseI	TTAA	2 cut(s)	761, 1111
MslI	CAYNNNNRTG	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	971
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	971
MwoI	GCNNNNNNNGC	3 cut(s)	251, 326, 963
NcoI	CCATGG	1 cut(s)	44
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	5 cut(s)	233, 463, 613, 724, 892
NmeAIII	GCCGAG	1 cut(s)	983
NsiI	ATGCAT	1 cut(s)	481
NspI	RCATGY	3 cut(s)	71, 561, 860
PciI	ACATGT	3 cut(s)	67, 557, 856
PciSI	GCTCTTC	1 cut(s)	531
PctI	GAATGC	1 cut(s)	479
PfeI	GAWTC	3 cut(s)	488, 641, 827
PfoI	TCCNGGA	1 cut(s)	969
PkrI	GCNGC	1 cut(s)	228
PleI	GAGTC	2 cut(s)	535, 778
PpsI	GAGTC	2 cut(s)	535, 778
PscI	ACATGT	3 cut(s)	67, 557, 856
Psp1406I	AACGTT	1 cut(s)	878
Psp6I	CCWGG	1 cut(s)	969
PspGI	CCWGG	1 cut(s)	969
PsuI	RGATCY	3 cut(s)	233, 613, 724
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	678
SapI	GCTCTTC	1 cut(s)	531
SaqAI	TTAA	2 cut(s)	761, 1111
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	5 cut(s)	233, 463, 613, 724, 892
SchI	GAGTC	2 cut(s)	536, 779
ScrFI	CCNGG	1 cut(s)	971
SduI	GDGCHC	2 cut(s)	411, 696
SfaNI	GCATC	5 cut(s)	21, 86, 241, 316, 466
SmiMI	CAYNNNNRTG	1 cut(s)	678
SmlI	CTYRAG	2 cut(s)	402, 471
SmoI	CTYRAG	2 cut(s)	402, 471
Sse9I	AATT	2 cut(s)	151, 989
SsiI	CCGC	3 cut(s)	61, 899, 1101
SspMI	CTAG	1 cut(s)	977
StyD4I	CCNGG	1 cut(s)	969
StyI	CCWWGG	2 cut(s)	44, 136
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	1 cut(s)	881
TaqI	TCGA	1 cut(s)	552
TasI	AATT	2 cut(s)	151, 989
TatI	WGTACW	1 cut(s)	70
TfiI	GAWTC	3 cut(s)	488, 641, 827
Tru1I	TTAA	2 cut(s)	761, 1111
Tru9I	TTAA	2 cut(s)	761, 1111
TseI	GCWGC	1 cut(s)	226
TspDTI	ATGAA	8 cut(s)	101, 192, 255, 522, 549, 654, 662, 735
TspGWI	ACGGA	1 cut(s)	1001
XceI	RCATGY	3 cut(s)	71, 561, 860
XcmI	CCANNNNNNNNNTGG	2 cut(s)	42, 201
XspI	CTAG	1 cut(s)	977
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.