Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Forward (+)

43179015 .. 43182681

Gene Structure 3667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG222000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGATGTGGGAGGATCCCAACTCAAGCATTTACAACAATGGATGGACAAATGCTAACTCTTCATGGAATCCGGAAGCGTTCAACTCATGGCAGCCTTATCAAGTCCCTATGTATGATCCTTATCATCACAATATTGATTCATTCATGTGGCCGTCATACCAAGATCAAGTACCAGTCCTCTTGGTTGATCCAATGAAGCCCTCCCTTGAGGCAATTGTAAATGCAGTTGCGAAAAGTGCAGAAGAATCATCAAGGAATATGGACAAAGCCGTGGAGAATATTGAGCGACATATCCAGCAAATTATTAACGCTTTGAACCAAGAAACAGAGGAGAGGGAAATGCAATCTTGTGTTCAAGAGGCATATCATGAGGTGTTGACGAGTGAGGAAGAAGATTGGGCAGAACCTAATGAGACTTTGGAGGCCAAGGTACTTATGGAGTGCCCTCCTACACCTACTACAACTTTAGGGCAGCCCCTTGAAGTCACAGCCTTACCTCAACCTCATAACATATTCCATGAGTCAATTTTGGATGAGGATGAGGATACAGATTTGGATGAGCCCTATGAAAAGAAACTTGAGGTTGGGACGTGTGGGGATTATGTGTTACAATATACAACCGAGCTTGAAGCATGTGAAAATAGGGAAATTGAGGAGTCCTTGGCAGATGAGGAACTTCACATTAAAGAAAGTAAGGCTGAGCTTCATGTAAATGAGTCCCAAGTGCCGGAAGCAATCATTATAGCTCATGAAGATCAAGAGTACAAGGATGACATAGGGGATTGCTTAGAAGAAGTATCCAACAAATCTCCTATAGAAGAGCCTCTAATTCCATCACGTGGACGACCACCTGATCATTACTTGTCACATTTGAGCTTTACATATGTTCCCTCTATCCAAGAAACCCTTGAGCTTGTTGATCATGTGGAGATGGTGATAGGTGAATATCCCAAATCTGATAACAAGATTCTTTTGGCCATGTTTATGGGATCCAAGAGGCGAATGAGACAATGGAATAAGAGAAAGAAAACGAGAAAATTGAAGTCCTATCTTTCCATCGTTACCAAGAAGCACAAGTTACTTCAAAGGGACCACCTAGCATCTTTGATAAGGGTAAAGCATCTCATGGAACCAAGTCCAAAACCTCCTGGTTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

386

Amino Acids

44.63

Weight (kDa)

4.71

Isoelectric Point (pI)

64.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	839
AccIII	TCCGGA	1 cut(s)	70
AclWI	GGATC	6 cut(s)	8, 21, 110, 182, 984, 997
AcoI	YGGCCR	2 cut(s)	149, 975
AcvI	CACGTG	1 cut(s)	839
AfaI	GTAC	3 cut(s)	171, 432, 764
AfiI	CCNNNNNNNGG	2 cut(s)	727, 839
AflIII	ACRYGT	1 cut(s)	590
AgsI	TTSAA	7 cut(s)	82, 316, 356, 482, 629, 1042, 1085
AjiI	CACGTC	1 cut(s)	591
AjnI	CCWGG	1 cut(s)	1147
AluBI	AGCT	5 cut(s)	625, 703, 746, 876, 913
AluI	AGCT	5 cut(s)	625, 703, 746, 876, 913
Alw26I	GTCTC	2 cut(s)	407, 1000
AlwI	GGATC	6 cut(s)	8, 21, 110, 182, 984, 997
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	3 cut(s)	149, 423, 975
ApeKI	GCWGC	2 cut(s)	91, 472
AspS9I	GGNCC	1 cut(s)	1090
AsuHPI	GGTGA	2 cut(s)	946, 953
AvaII	GGWCC	1 cut(s)	1090
BaeGI	GKGCMC	1 cut(s)	446
BalI	TGGCCA	1 cut(s)	977
BamHI	GGATCC	2 cut(s)	13, 989
BanII	GRGCYC	1 cut(s)	564
BbrPI	CACGTG	1 cut(s)	839
BbvI	GCAGC	2 cut(s)	103, 484
BccI	CCATC	4 cut(s)	36, 841, 925, 1064
BceAI	ACGGC	2 cut(s)	136, 254
BciT130I	CCWGG	1 cut(s)	1149
BciVI	GTATCC	2 cut(s)	538, 808
BclI	TGATCA	2 cut(s)	853, 919
BcoDI	GTCTC	2 cut(s)	407, 1000
BfaI	CTAG	1 cut(s)	1097
BfmI	CTRYAG	1 cut(s)	813
BfuI	GTATCC	2 cut(s)	538, 808
BisI	GCNGC	2 cut(s)	92, 473
BlpI	GCTNAGC	1 cut(s)	699
BlsI	GCNGC	2 cut(s)	93, 474
Bme1390I	CCNGG	1 cut(s)	1149
Bme18I	GGWCC	1 cut(s)	1090
BmgBI	CACGTC	1 cut(s)	591
BmgT120I	GGNCC	1 cut(s)	1090
BmiI	GGNNCC	4 cut(s)	15, 991, 1091, 1131
BmrFI	CCNGG	1 cut(s)	1149
BmsI	GCATC	2 cut(s)	1109, 1129
Bpu1102I	GCTNAGC	1 cut(s)	699
BpuEI	CTTGAG	4 cut(s)	7, 227, 599, 929
BsaAI	YACGTR	1 cut(s)	839
BsaBI	GATNNNNATC	1 cut(s)	120
BsaJI	CCNNGG	3 cut(s)	270, 426, 660
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	2 cut(s)	727, 839
Bse1I	ACTGG	1 cut(s)	173
Bse8I	GATNNNNATC	1 cut(s)	120
BseAI	TCCGGA	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	1149
BseDI	CCNNGG	3 cut(s)	270, 426, 660
BseGI	GGATG	5 cut(s)	47, 538, 544, 562, 775
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	2 cut(s)	727, 839
BseMII	CTCAG	1 cut(s)	690
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	2 cut(s)	344, 668
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	2 cut(s)	103, 484
BsgI	GTGCAG	1 cut(s)	258
BshFI	GGCC	3 cut(s)	151, 425, 977
BsiSI	CCGG	2 cut(s)	71, 728
BslFI	GGGAC	4 cut(s)	89, 601, 703, 1103
BslI	CCNNNNNNNGG	2 cut(s)	727, 839
BsmAI	GTCTC	2 cut(s)	407, 1000
BsmFI	GGGAC	4 cut(s)	89, 601, 703, 1103
BsnI	GGCC	3 cut(s)	151, 425, 977
Bsp1286I	GDGCHC	2 cut(s)	446, 564
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	8 cut(s)	13, 115, 163, 187, 754, 853, 919, 989
Bsp1720I	GCTNAGC	1 cut(s)	699
BspANI	GGCC	3 cut(s)	151, 425, 977
BspCNI	CTCAG	1 cut(s)	691
BspEI	TCCGGA	1 cut(s)	70
BspHI	TCATGA	2 cut(s)	367, 748
BspLI	GGNNCC	4 cut(s)	15, 991, 1091, 1131
BspPI	GGATC	6 cut(s)	8, 21, 110, 182, 984, 997
BspQI	GCTCTTC	1 cut(s)	813
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	3 cut(s)	270, 426, 660
BssMI	GATC	8 cut(s)	13, 115, 163, 187, 754, 853, 919, 989
BssT1I	CCWWGG	2 cut(s)	426, 660
Bst2UI	CCWGG	1 cut(s)	1149
Bst6I	CTCTTC	2 cut(s)	64, 813
BstBAI	YACGTR	1 cut(s)	839
BstDEI	CTNAG	2 cut(s)	699, 787
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	5 cut(s)	47, 538, 544, 562, 775
BstKTI	GATC	8 cut(s)	16, 118, 166, 190, 757, 856, 922, 992
BstMAI	GTCTC	2 cut(s)	407, 1000
BstMBI	GATC	8 cut(s)	13, 115, 163, 187, 754, 853, 919, 989
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	1149
BstNSI	RCATGY	1 cut(s)	636
BstSCI	CCNGG	1 cut(s)	1147
BstSFI	CTRYAG	1 cut(s)	813
BstSLI	GKGCMC	1 cut(s)	446
BstV1I	GCAGC	2 cut(s)	103, 484
BstX2I	RGATCY	2 cut(s)	13, 989
BstXI	CCANNNNNNTGG	1 cut(s)	985
BstYI	RGATCY	2 cut(s)	13, 989
BsuI	GTATCC	2 cut(s)	538, 808
BsuRI	GGCC	3 cut(s)	151, 425, 977
BtgI	CCRYGG	1 cut(s)	270
BtrI	CACGTC	1 cut(s)	591
BtsCI	GGATG	5 cut(s)	47, 538, 544, 562, 775
CciI	TCATGA	2 cut(s)	367, 748
Cfr13I	GGNCC	1 cut(s)	1090
Csp6I	GTAC	3 cut(s)	170, 431, 763
CviQI	GTAC	3 cut(s)	170, 431, 763
DdeI	CTNAG	2 cut(s)	699, 787
DpnI	GATC	8 cut(s)	15, 117, 165, 189, 756, 855, 921, 991
DpnII	GATC	8 cut(s)	13, 115, 163, 187, 754, 853, 919, 989
EaeI	YGGCCR	2 cut(s)	149, 975
Eam1104I	CTCTTC	2 cut(s)	64, 813
EarI	CTCTTC	2 cut(s)	64, 813
Eco130I	CCWWGG	2 cut(s)	426, 660
Eco24I	GRGCYC	1 cut(s)	564
Eco47I	GGWCC	1 cut(s)	1090
Eco72I	CACGTG	1 cut(s)	839
EcoRII	CCWGG	1 cut(s)	1147
EcoT14I	CCWWGG	2 cut(s)	426, 660
EcoT38I	GRGCYC	1 cut(s)	564
ErhI	CCWWGG	2 cut(s)	426, 660
FalI	AAGNNNNNCTT	2 cut(s)	891, 923
FaqI	GGGAC	4 cut(s)	89, 601, 703, 1103
FauNDI	CATATG	1 cut(s)	883
FbaI	TGATCA	2 cut(s)	853, 919
Fnu4HI	GCNGC	2 cut(s)	92, 473
FokI	GGATG	5 cut(s)	54, 545, 551, 569, 782
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	2 cut(s)	92, 473
FspBI	CTAG	1 cut(s)	1097
GluI	GCNGC	2 cut(s)	92, 473
HaeIII	GGCC	3 cut(s)	151, 425, 977
HapII	CCGG	2 cut(s)	71, 728
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	7 cut(s)	67, 137, 245, 521, 656, 716, 967
HpaII	CCGG	2 cut(s)	71, 728
HphI	GGTGA	2 cut(s)	946, 953
Hpy166II	GTNNAC	2 cut(s)	378, 842
Hpy188I	TCNGA	1 cut(s)	958
Hpy188III	TCNNGA	6 cut(s)	71, 356, 368, 749, 758, 1158
Hpy8I	GTNNAC	2 cut(s)	378, 842
HpyCH4IV	ACGT	2 cut(s)	590, 838
HpyCH4V	TGCA	3 cut(s)	224, 239, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	2 cut(s)	699, 787
HpySE526I	ACGT	2 cut(s)	590, 838
Kpn2I	TCCGGA	1 cut(s)	70
Ksp22I	TGATCA	2 cut(s)	853, 919
Kzo9I	GATC	8 cut(s)	13, 115, 163, 187, 754, 853, 919, 989
LguI	GCTCTTC	1 cut(s)	813
LpnPI	CCDG	6 cut(s)	84, 186, 308, 741, 864, 1134
Lsp1109I	GCAGC	2 cut(s)	103, 484
LweI	GCATC	2 cut(s)	1109, 1129
MaeI	CTAG	1 cut(s)	1097
MaeII	ACGT	2 cut(s)	590, 838
MaeIII	GTNAC	6 cut(s)	484, 606, 864, 1060, 1077, 1151
MalI	GATC	8 cut(s)	15, 117, 165, 189, 756, 855, 921, 991
MboI	GATC	8 cut(s)	13, 115, 163, 187, 754, 853, 919, 989
MboII	GAAGA	7 cut(s)	51, 254, 401, 404, 764, 803, 830
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	2 cut(s)	13, 989
MhlI	GDGCHC	2 cut(s)	446, 564
MlsI	TGGCCA	1 cut(s)	977
MluCI	AATT	6 cut(s)	213, 300, 525, 648, 828, 1037
MluNI	TGGCCA	1 cut(s)	977
MlyI	GAGTC	3 cut(s)	530, 665, 725
MmeI	TCCRAC	1 cut(s)	825
Mox20I	TGGCCA	1 cut(s)	977
MroI	TCCGGA	1 cut(s)	70
MscI	TGGCCA	1 cut(s)	977
MseI	TTAA	2 cut(s)	306, 684
MslI	CAYNNNNRTG	3 cut(s)	145, 711, 983
Msp20I	TGGCCA	1 cut(s)	977
MspI	CCGG	2 cut(s)	71, 728
MspR9I	CCNGG	1 cut(s)	1149
MunI	CAATTG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	1149
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeI	CATATG	1 cut(s)	883
NdeII	GATC	8 cut(s)	13, 115, 163, 187, 754, 853, 919, 989
NlaIV	GGNNCC	4 cut(s)	15, 991, 1091, 1131
NmuCI	GTSAC	2 cut(s)	484, 864
NspI	RCATGY	1 cut(s)	636
PagI	TCATGA	2 cut(s)	367, 748
PciSI	GCTCTTC	1 cut(s)	813
PfeI	GAWTC	4 cut(s)	67, 137, 245, 967
PflMI	CCANNNNNTGG	1 cut(s)	839
PkrI	GCNGC	2 cut(s)	93, 474
PleI	GAGTC	3 cut(s)	529, 664, 724
PmaCI	CACGTG	1 cut(s)	839
PmlI	CACGTG	1 cut(s)	839
PpsI	GAGTC	3 cut(s)	529, 664, 724
Ppu21I	YACGTR	1 cut(s)	839
Psp6I	CCWGG	1 cut(s)	1147
PspCI	CACGTG	1 cut(s)	839
PspGI	CCWGG	1 cut(s)	1147
PspN4I	GGNNCC	4 cut(s)	15, 991, 1091, 1131
PspPI	GGNCC	1 cut(s)	1090
PsuI	RGATCY	2 cut(s)	13, 989
RsaI	GTAC	3 cut(s)	171, 432, 764
RsaNI	GTAC	3 cut(s)	170, 431, 763
RseI	CAYNNNNRTG	3 cut(s)	145, 711, 983
SapI	GCTCTTC	1 cut(s)	813
SaqAI	TTAA	2 cut(s)	306, 684
SatI	GCNGC	2 cut(s)	92, 473
Sau3AI	GATC	8 cut(s)	13, 115, 163, 187, 754, 853, 919, 989
Sau96I	GGNCC	1 cut(s)	1090
SchI	GAGTC	3 cut(s)	530, 665, 725
ScrFI	CCNGG	1 cut(s)	1149
SduI	GDGCHC	2 cut(s)	446, 564
SfaNI	GCATC	2 cut(s)	1109, 1129
SfcI	CTRYAG	1 cut(s)	813
SinI	GGWCC	1 cut(s)	1090
SmiMI	CAYNNNNRTG	3 cut(s)	145, 711, 983
SmlI	CTYRAG	4 cut(s)	22, 206, 578, 908
SmoI	CTYRAG	4 cut(s)	22, 206, 578, 908
Sse9I	AATT	6 cut(s)	213, 300, 525, 648, 828, 1037
SspI	AATATT	2 cut(s)	133, 280
SspMI	CTAG	1 cut(s)	1097
StyD4I	CCNGG	1 cut(s)	1147
StyI	CCWWGG	2 cut(s)	426, 660
TaiI	ACGT	2 cut(s)	593, 841
TasI	AATT	6 cut(s)	213, 300, 525, 648, 828, 1037
TatI	WGTACW	1 cut(s)	762
TfiI	GAWTC	4 cut(s)	67, 137, 245, 967
Tru1I	TTAA	2 cut(s)	306, 684
Tru9I	TTAA	2 cut(s)	306, 684
TseFI	GTSAC	2 cut(s)	484, 864
TseI	GCWGC	2 cut(s)	91, 472
Tsp45I	GTSAC	2 cut(s)	484, 864
TspDTI	ATGAA	7 cut(s)	51, 129, 133, 209, 582, 695, 765
Van91I	CCANNNNNTGG	1 cut(s)	839
VpaK11BI	GGWCC	1 cut(s)	1090
XceI	RCATGY	1 cut(s)	636
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XspI	CTAG	1 cut(s)	1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.