Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Forward (+)

21521019 .. 21533129

Gene Structure 12111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00399570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCTTTATACCCTTTTCGGTGGGCCCTCGCTAGGCCCCCTAGGGAGTCCCCCACTCCCCGCTAAGATAGACCTCCGTTTGGTCGGTGTATTGTTTGTTAAGGGGAGTTGCGCCGAGCAAGGGTGTTGGGTGGTGAACCCAATCTTTTCATACCCAAGTGGCGAGGGTCAACATGCCCGATCGGGGCCGTCGAAGTGTCCTCTTACTTGTCCCGGAGGACCATGGTTTGACCGCAACGCCGTGTGGCGGTCTTTGTCGAGTGAGGCGTTGCCTCGGGAATCGCCGTTGGCGGAAGTCCCTCATGATAGTAAGCGCAAGCAAGTGTCATGGGGCTTGCTGGTGGTAGACCACAAGCGGGTGTTGCGCTCGGCGGAGATTAGAGTGCTTGCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.24

Weight (kDa)

9.5

Isoelectric Point (pI)

62.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	6 cut(s)	60, 232, 247, 290, 355, 371
AfiI	CCNNNNNNNGG	6 cut(s)	32, 79, 120, 183, 246, 355
Ama87I	CYCGRG	1 cut(s)	273
AoxI	GGCC	3 cut(s)	23, 34, 185
ApaI	GGGCCC	1 cut(s)	27
AspA2I	CCTAGG	1 cut(s)	40
AspLEI	GCGC	3 cut(s)	113, 315, 366
AspS9I	GGNCC	5 cut(s)	23, 24, 35, 185, 218
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	218
AvrII	CCTAGG	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	27
BceAI	ACGGC	3 cut(s)	172, 224, 268
BcnI	CCSGG	1 cut(s)	213
BfaI	CTAG	2 cut(s)	32, 41
BlnI	CCTAGG	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	218
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	5 cut(s)	23, 24, 35, 185, 218
BmiI	GGNNCC	3 cut(s)	25, 37, 186
BmrFI	CCNGG	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	40, 221, 272
Bsc4I	CCNNNNNNNGG	6 cut(s)	32, 79, 120, 183, 246, 355
BseDI	CCNNGG	3 cut(s)	40, 221, 272
BseLI	CCNNNNNNNGG	6 cut(s)	32, 79, 120, 183, 246, 355
BseSI	GKGCMC	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	182
BshFI	GGCC	3 cut(s)	25, 36, 187
BsiEI	CGRYCG	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	213
BslFI	GGGAC	3 cut(s)	33, 195, 281
BslI	CCNNNNNNNGG	6 cut(s)	32, 79, 120, 183, 246, 355
BsmFI	GGGAC	3 cut(s)	33, 195, 281
BsnI	GGCC	3 cut(s)	25, 36, 187
BsoBI	CYCGRG	1 cut(s)	273
Bsp120I	GGGCCC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	179
Bsp19I	CCATGG	1 cut(s)	221
BspACI	CCGC	6 cut(s)	60, 232, 247, 290, 355, 371
BspANI	GGCC	3 cut(s)	25, 36, 187
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	3 cut(s)	25, 37, 186
BssECI	CCNNGG	3 cut(s)	40, 221, 272
BssMI	GATC	1 cut(s)	179
BssT1I	CCWWGG	2 cut(s)	40, 221
BstC8I	GCNNGC	3 cut(s)	317, 335, 387
BstDEI	CTNAG	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	221
BstHHI	GCGC	3 cut(s)	113, 315, 366
BstKTI	GATC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	179
BstMCI	CGRYCG	1 cut(s)	182
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	211
BstSLI	GKGCMC	1 cut(s)	27
BsuRI	GGCC	3 cut(s)	25, 36, 187
BtgI	CCRYGG	1 cut(s)	221
Cac8I	GCNNGC	3 cut(s)	317, 335, 387
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	3 cut(s)	113, 315, 366
Cfr13I	GGNCC	5 cut(s)	23, 24, 35, 185, 218
CviAII	CATG	4 cut(s)	173, 222, 302, 327
CviJI	RGCY	4 cut(s)	25, 36, 187, 333
CviKI_1	RGCY	4 cut(s)	25, 36, 187, 333
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	181
DpnII	GATC	1 cut(s)	179
EciI	GGCGGA	2 cut(s)	305, 386
Eco130I	CCWWGG	2 cut(s)	40, 221
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	273
EcoO109I	RGGNCCY	2 cut(s)	24, 35
EcoT14I	CCWWGG	2 cut(s)	40, 221
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	2 cut(s)	40, 221
FaeI	CATG	4 cut(s)	176, 225, 305, 330
FaiI	YATR	6 cut(s)	9, 151, 174, 223, 303, 328
FaqI	GGGAC	3 cut(s)	33, 195, 281
FatI	CATG	4 cut(s)	172, 221, 301, 326
FauI	CCCGC	2 cut(s)	67, 348
FblI	GTMKAC	1 cut(s)	345
FriOI	GRGCYC	1 cut(s)	27
FspBI	CTAG	2 cut(s)	32, 41
GlaI	GCGC	3 cut(s)	112, 314, 365
HaeIII	GGCC	3 cut(s)	25, 36, 187
HapII	CCGG	1 cut(s)	213
HhaI	GCGC	3 cut(s)	113, 315, 366
Hin1II	CATG	4 cut(s)	176, 225, 305, 330
Hin6I	GCGC	3 cut(s)	111, 313, 364
HinP1I	GCGC	3 cut(s)	111, 313, 364
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HinfI	GANTC	2 cut(s)	46, 278
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	3 cut(s)	136, 170, 346
Hpy188III	TCNNGA	2 cut(s)	275, 302
Hpy8I	GTNNAC	3 cut(s)	136, 170, 346
Hpy99I	CGWCG	1 cut(s)	193
HpyCH4V	TGCA	1 cut(s)	389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	4 cut(s)	176, 225, 305, 330
HspAI	GCGC	3 cut(s)	111, 313, 364
Kzo9I	GATC	1 cut(s)	179
LpnPI	CCDG	2 cut(s)	226, 323
MaeI	CTAG	2 cut(s)	32, 41
MalI	GATC	1 cut(s)	181
MboI	GATC	1 cut(s)	179
MhlI	GDGCHC	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	8 cut(s)	37, 83, 157, 209, 210, 256, 282, 309
MseI	TTAA	1 cut(s)	99
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	361
NciI	CCSGG	1 cut(s)	213
NcoI	CCATGG	1 cut(s)	221
NdeII	GATC	1 cut(s)	179
NlaIII	CATG	4 cut(s)	176, 225, 305, 330
NlaIV	GGNNCC	3 cut(s)	25, 37, 186
NmeAIII	GCCGAG	2 cut(s)	139, 347
NspI	RCATGY	1 cut(s)	176
PagI	TCATGA	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	2 cut(s)	188, 263
PfeI	GAWTC	1 cut(s)	278
PfoI	TCCNGGA	1 cut(s)	211
Ple19I	CGATCG	1 cut(s)	182
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PspN4I	GGNNCC	3 cut(s)	25, 37, 186
PspOMI	GGGCCC	1 cut(s)	23
PspPI	GGNCC	5 cut(s)	23, 24, 35, 185, 218
PvuI	CGATCG	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	99
Sau3AI	GATC	1 cut(s)	179
Sau96I	GGNCC	5 cut(s)	23, 24, 35, 185, 218
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	1 cut(s)	75
SinI	GGWCC	1 cut(s)	218
SsiI	CCGC	6 cut(s)	60, 232, 247, 290, 355, 371
SspMI	CTAG	2 cut(s)	32, 41
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	2 cut(s)	40, 221
TaqI	TCGA	2 cut(s)	191, 257
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	218
XceI	RCATGY	1 cut(s)	176
XmaJI	CCTAGG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	2 cut(s)	32, 41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.