Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Reverse (-)

59353794 .. 59354462

Gene Structure 669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCAACTTTAGGGGAGCTCCCGACAACTATAGTTTTGTGTCAACCTCATGATGCAGTCCATGATTCAACATTTGATGAGGATGAAGTAATGGATTTGGAGGAGTCTTATAAAGAGCCACTCAACGTTGAGACTTTTGAGGATCACTACATGACCGAGCTTGAAAAGTGGGAAATGGAAGATCCATTTGATGATGAGGAATTCTATCATGAAGAAAGTAAGGATGAGCTTCATGCAAATGTGCCCCAAGTGCCTGAAACAATCATGTTACCTAATGAAGATCCAAAAGGATATGAGGCCACAAGGGAGGATTGCTTAAAAGAAGATTCCATCATAGCTCCTACACATGGAAGACCATCTGATCCTACAACGCCTCATTCAACCTCTACACATGTTCTCCACATCCAACCAATGGTTGAGTTTGTTGATCATGTGGAGATGGTCATAAGTGAACATCTCAAATCACATAAGGAGATCATTGTAGCCGTGATTGTTGAACTTAAGAGAAGAAGGAGACAATGGAAGAAGAGAAAGAAAAAGAGAAGCATCAAATCCTATCTTTCCATTGCTCCCAAGTTACCTAAGTTGCTAGAAAGGGCCCATGAAACATCTTTGAAGAAGCTTAAGCATCCGATCGAACCGCGGCCTAAACCTCCCGATTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

25.94

Weight (kDa)

5.31

Isoelectric Point (pI)

60.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	111
AccB7I	CCANNNNNTGG	1 cut(s)	412
AccII	CGCG	1 cut(s)	643
AciI	CCGC	2 cut(s)	641, 643
AclI	AACGTT	1 cut(s)	126
AclWI	GGATC	4 cut(s)	150, 176, 275, 356
AcsI	RAATTY	1 cut(s)	200
AfiI	CCNNNNNNNGG	2 cut(s)	347, 412
AflII	CTTAAG	2 cut(s)	500, 623
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	5 cut(s)	69, 164, 381, 497, 616
AluBI	AGCT	5 cut(s)	19, 160, 229, 338, 622
AluI	AGCT	5 cut(s)	19, 160, 229, 338, 622
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	125, 508
AlwI	GGATC	4 cut(s)	150, 176, 275, 356
AoxI	GGCC	3 cut(s)	297, 597, 644
ApaI	GGGCCC	1 cut(s)	601
ApoI	RAATTY	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	597, 598
BaeGI	GKGCMC	2 cut(s)	246, 601
BanII	GRGCYC	2 cut(s)	21, 601
BbsI	GAAGAC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	21
BccI	CCATC	3 cut(s)	338, 364, 433
BceAI	ACGGC	1 cut(s)	470
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	2 cut(s)	125, 508
BfaI	CTAG	1 cut(s)	590
BfmI	CTRYAG	1 cut(s)	30
BfrI	CTTAAG	2 cut(s)	500, 623
BisI	GCNGC	1 cut(s)	644
BlsI	GCNGC	1 cut(s)	645
BmgT120I	GGNCC	2 cut(s)	597, 598
BmiI	GGNNCC	1 cut(s)	599
BmsI	GCATC	3 cut(s)	43, 555, 637
BpiI	GAAGAC	1 cut(s)	358
BsaJI	CCNNGG	1 cut(s)	641
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 412
Bse3DI	GCAATG	1 cut(s)	564
BseDI	CCNNGG	1 cut(s)	641
BseGI	GGATG	4 cut(s)	88, 229, 402, 628
BseLI	CCNNNNNNNGG	2 cut(s)	347, 412
BseMI	GCAATG	1 cut(s)	564
BseRI	GAGGAG	1 cut(s)	116
BseSI	GKGCMC	2 cut(s)	246, 601
Bsh1236I	CGCG	1 cut(s)	643
Bsh1285I	CGRYCG	1 cut(s)	636
BshFI	GGCC	3 cut(s)	299, 599, 646
BsiEI	CGRYCG	1 cut(s)	636
BsiHKAI	GWGCWC	1 cut(s)	21
BslI	CCNNNNNNNGG	2 cut(s)	347, 412
BsmAI	GTCTC	2 cut(s)	125, 508
BsnI	GGCC	3 cut(s)	299, 599, 646
Bsp120I	GGGCCC	1 cut(s)	597
Bsp1286I	GDGCHC	3 cut(s)	21, 246, 601
Bsp143I	GATC	7 cut(s)	142, 181, 280, 361, 427, 474, 633
BspACI	CCGC	2 cut(s)	641, 643
BspANI	GGCC	3 cut(s)	299, 599, 646
BspFNI	CGCG	1 cut(s)	643
BspHI	TCATGA	2 cut(s)	49, 208
BspLI	GGNNCC	1 cut(s)	599
BspPI	GGATC	4 cut(s)	150, 176, 275, 356
BspTI	CTTAAG	2 cut(s)	500, 623
BsrDI	GCAATG	1 cut(s)	564
BssECI	CCNNGG	1 cut(s)	641
BssMI	GATC	7 cut(s)	142, 181, 280, 361, 427, 474, 633
Bst6I	CTCTTC	1 cut(s)	521
BstAFI	CTTAAG	2 cut(s)	500, 623
BstDEI	CTNAG	1 cut(s)	582
BstDSI	CCRYGG	1 cut(s)	641
BstF5I	GGATG	4 cut(s)	88, 229, 402, 628
BstFNI	CGCG	1 cut(s)	643
BstKTI	GATC	7 cut(s)	145, 184, 283, 364, 430, 477, 636
BstMAI	GTCTC	2 cut(s)	125, 508
BstMBI	GATC	7 cut(s)	142, 181, 280, 361, 427, 474, 633
BstMCI	CGRYCG	1 cut(s)	636
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstNSI	RCATGY	1 cut(s)	395
BstSFI	CTRYAG	1 cut(s)	30
BstSLI	GKGCMC	2 cut(s)	246, 601
BstUI	CGCG	1 cut(s)	643
BstV2I	GAAGAC	1 cut(s)	358
BstX2I	RGATCY	2 cut(s)	181, 280
BstYI	RGATCY	2 cut(s)	181, 280
BsuRI	GGCC	3 cut(s)	299, 599, 646
BtgI	CCRYGG	1 cut(s)	641
BtsCI	GGATG	4 cut(s)	88, 229, 402, 628
CciI	TCATGA	2 cut(s)	49, 208
Cfr13I	GGNCC	2 cut(s)	597, 598
Cfr42I	CCGCGG	1 cut(s)	644
DdeI	CTNAG	1 cut(s)	582
DpnI	GATC	7 cut(s)	144, 183, 282, 363, 429, 476, 635
DpnII	GATC	7 cut(s)	142, 181, 280, 361, 427, 474, 633
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	2 cut(s)	21, 601
Eco53kI	GAGCTC	1 cut(s)	19
EcoICRI	GAGCTC	1 cut(s)	19
EcoO109I	RGGNCCY	1 cut(s)	597
EcoRI	GAATTC	1 cut(s)	200
EcoT38I	GRGCYC	2 cut(s)	21, 601
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	1 cut(s)	644
FokI	GGATG	4 cut(s)	95, 236, 389, 615
FriOI	GRGCYC	2 cut(s)	21, 601
Fsp4HI	GCNGC	1 cut(s)	644
FspBI	CTAG	1 cut(s)	590
GluI	GCNGC	1 cut(s)	644
HaeIII	GGCC	3 cut(s)	299, 599, 646
HincII	GTYRAC	1 cut(s)	44
HindII	GTYRAC	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	3 cut(s)	65, 104, 326
Hpy166II	GTNNAC	2 cut(s)	44, 452
Hpy188I	TCNGA	2 cut(s)	361, 633
Hpy188III	TCNNGA	5 cut(s)	22, 50, 209, 656, 666
Hpy8I	GTNNAC	2 cut(s)	44, 452
HpyAV	CCTTC	1 cut(s)	504
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	56, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpyF3I	CTNAG	1 cut(s)	582
HpySE526I	ACGT	1 cut(s)	126
Ksp22I	TGATCA	1 cut(s)	427
KspI	CCGCGG	1 cut(s)	644
Kzo9I	GATC	7 cut(s)	142, 181, 280, 361, 427, 474, 633
LmnI	GCTCC	4 cut(s)	16, 24, 343, 574
LpnPI	CCDG	1 cut(s)	267
LweI	GCATC	3 cut(s)	43, 555, 637
MaeI	CTAG	1 cut(s)	590
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	2 cut(s)	267, 576
MalI	GATC	7 cut(s)	144, 183, 282, 363, 429, 476, 635
MboI	GATC	7 cut(s)	142, 181, 280, 361, 427, 474, 633
MboII	GAAGA	9 cut(s)	191, 224, 290, 335, 363, 519, 535, 538, 628
MflI	RGATCY	2 cut(s)	181, 280
MhlI	GDGCHC	3 cut(s)	21, 246, 601
MluCI	AATT	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	430
MseI	TTAA	3 cut(s)	317, 501, 624
MslI	CAYNNNNRTG	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	643
MspCI	CTTAAG	2 cut(s)	500, 623
MvnI	CGCG	1 cut(s)	643
MwoI	GCNNNNNNNGC	1 cut(s)	250
NdeII	GATC	7 cut(s)	142, 181, 280, 361, 427, 474, 633
NlaIV	GGNNCC	1 cut(s)	599
NspI	RCATGY	1 cut(s)	395
PagI	TCATGA	2 cut(s)	49, 208
PciI	ACATGT	1 cut(s)	391
PfeI	GAWTC	2 cut(s)	65, 326
PflMI	CCANNNNNTGG	1 cut(s)	412
PkrI	GCNGC	1 cut(s)	645
Ple19I	CGATCG	1 cut(s)	636
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PscI	ACATGT	1 cut(s)	391
PsiI	TTATAA	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	21
Psp1406I	AACGTT	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	599
PspOMI	GGGCCC	1 cut(s)	597
PspPI	GGNCC	2 cut(s)	597, 598
PsuI	RGATCY	2 cut(s)	181, 280
PvuI	CGATCG	1 cut(s)	636
RseI	CAYNNNNRTG	1 cut(s)	237
SacI	GAGCTC	1 cut(s)	21
SacII	CCGCGG	1 cut(s)	644
SaqAI	TTAA	3 cut(s)	317, 501, 624
SatI	GCNGC	1 cut(s)	644
Sau3AI	GATC	7 cut(s)	142, 181, 280, 361, 427, 474, 633
Sau96I	GGNCC	2 cut(s)	597, 598
SchI	GAGTC	1 cut(s)	113
SduI	GDGCHC	3 cut(s)	21, 246, 601
SfaNI	GCATC	3 cut(s)	43, 555, 637
SfcI	CTRYAG	1 cut(s)	30
Sfr303I	CCGCGG	1 cut(s)	644
SgrBI	CCGCGG	1 cut(s)	644
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	2 cut(s)	500, 623
SmoI	CTYRAG	2 cut(s)	500, 623
Sse9I	AATT	1 cut(s)	200
SsiI	CCGC	2 cut(s)	641, 643
SspMI	CTAG	1 cut(s)	590
SstI	GAGCTC	1 cut(s)	21
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	636
TaqII	GACCGA	1 cut(s)	170
TasI	AATT	1 cut(s)	200
TauI	GCSGC	1 cut(s)	646
TfiI	GAWTC	2 cut(s)	65, 326
Tru1I	TTAA	3 cut(s)	317, 501, 624
Tru9I	TTAA	3 cut(s)	317, 501, 624
TspDTI	ATGAA	5 cut(s)	99, 221, 225, 291, 618
Van91I	CCANNNNNTGG	1 cut(s)	412
Vha464I	CTTAAG	2 cut(s)	500, 623
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	395
XspI	CTAG	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.