Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Forward (+)

65969283 .. 65969855

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00274300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTGGGAGGATCCCAACTTAAGCATTTACAACAATGGTTGGACTAATGCTAACTCTTCATGGAATCCGGAAGCGTTCAACTCATGGCAGCCTTATCAAGTCCCTATGTATGATCCTTATCATCACAATATTGATTCATTCATGTGGCCGTCATACCAAGAGCAAGCACCAGTCCTCTTGGTTGATCCAATGAAGCCCTCCCTTGAGGCAATTGTACAGGCAGTTGCGAAAAGTGCGGAAGAATCATCAAGGAATATGGACAAAGCCGTGGAAAATATTGAGCAACATATCCAGCAAATTATTAATTCTTTGAACCAAGAAACAGAGGAGCAGGAAACACAATGTTGGGTTCAAGAGTCATATCATGAGGTGTTGACGAGTGAGGAAGAAGATTGGGCAGAAGCTAATGAACCTTTGGAGGCCAAGGTACTTATGGAGTGCCCTCCTACACCTACTACAACTTTAGGGCAATCCCTTGAAGTCACAGCCTTACCTCAACCTCAACCTCATAATGTATTTCATGAGTCAATTTTGGATGAGGATGAGGATACAGATGTGGATGAGCCCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

21.92

Weight (kDa)

4.05

Isoelectric Point (pI)

67.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	4 cut(s)	5, 18, 107, 179
AcoI	YGGCCR	1 cut(s)	146
AfaI	GTAC	2 cut(s)	216, 429
AflII	CTTAAG	1 cut(s)	19
AgsI	TTSAA	4 cut(s)	79, 313, 353, 479
AluBI	AGCT	1 cut(s)	404
AluI	AGCT	1 cut(s)	404
AlwI	GGATC	4 cut(s)	5, 18, 107, 179
Aor13HI	TCCGGA	1 cut(s)	67
AoxI	GGCC	2 cut(s)	146, 420
ApeKI	GCWGC	1 cut(s)	88
AseI	ATTAAT	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	443
BaeI	ACNNNNGTAYC	2 cut(s)	540, 573
BamHI	GGATCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	567
BbvI	GCAGC	1 cut(s)	100
BceAI	ACGGC	2 cut(s)	133, 251
BciVI	GTATCC	1 cut(s)	541
BfrI	CTTAAG	1 cut(s)	19
BfuI	GTATCC	1 cut(s)	541
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	267, 423
BsaWI	WCCGGW	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	170
Bse8I	GATNNNNATC	1 cut(s)	117
BseAI	TCCGGA	1 cut(s)	67
BseDI	CCNNGG	2 cut(s)	267, 423
BseGI	GGATG	3 cut(s)	541, 547, 565
BseJI	GATNNNNATC	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	443
BseXI	GCAGC	1 cut(s)	100
BshFI	GGCC	2 cut(s)	148, 422
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	148, 422
Bsp1286I	GDGCHC	2 cut(s)	443, 567
Bsp13I	TCCGGA	1 cut(s)	67
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	3 cut(s)	10, 112, 184
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	2 cut(s)	148, 422
BspEI	TCCGGA	1 cut(s)	67
BspHI	TCATGA	2 cut(s)	364, 520
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	4 cut(s)	5, 18, 107, 179
BspTI	CTTAAG	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	267, 423
BssMI	GATC	3 cut(s)	10, 112, 184
BssT1I	CCWWGG	1 cut(s)	423
Bst6I	CTCTTC	1 cut(s)	61
BstAFI	CTTAAG	1 cut(s)	19
BstAUI	TGTACA	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	165
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	3 cut(s)	541, 547, 565
BstKTI	GATC	3 cut(s)	13, 115, 187
BstMBI	GATC	3 cut(s)	10, 112, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstSLI	GKGCMC	1 cut(s)	443
BstV1I	GCAGC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	2 cut(s)	148, 422
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	3 cut(s)	541, 547, 565
Cac8I	GCNNGC	1 cut(s)	165
CciI	TCATGA	2 cut(s)	364, 520
Csp6I	GTAC	2 cut(s)	215, 428
CviAII	CATG	5 cut(s)	60, 84, 142, 365, 521
CviJI	RGCY	8 cut(s)	91, 148, 196, 266, 404, 422, 488, 565
CviKI_1	RGCY	8 cut(s)	91, 148, 196, 266, 404, 422, 488, 565
CviQI	GTAC	2 cut(s)	215, 428
DpnI	GATC	3 cut(s)	12, 114, 186
DpnII	GATC	3 cut(s)	10, 112, 184
EaeI	YGGCCR	1 cut(s)	146
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	567
EcoT14I	CCWWGG	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	5 cut(s)	63, 87, 145, 368, 524
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	5 cut(s)	59, 83, 141, 364, 520
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	2 cut(s)	548, 554
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	1 cut(s)	89
GluI	GCNGC	1 cut(s)	89
HaeIII	GGCC	2 cut(s)	148, 422
HapII	CCGG	1 cut(s)	68
Hin1II	CATG	5 cut(s)	63, 87, 145, 368, 524
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	5 cut(s)	64, 134, 242, 356, 524
HpaII	CCGG	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188III	TCNNGA	4 cut(s)	68, 353, 365, 521
Hpy8I	GTNNAC	1 cut(s)	375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
Hsp92II	CATG	5 cut(s)	63, 87, 145, 368, 524
Kpn2I	TCCGGA	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	10, 112, 184
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	5 cut(s)	81, 183, 203, 305, 317
Lsp1109I	GCAGC	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	3 cut(s)	12, 114, 186
MboI	GATC	3 cut(s)	10, 112, 184
MboII	GAAGA	4 cut(s)	48, 251, 398, 401
MfeI	CAATTG	1 cut(s)	210
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	2 cut(s)	443, 567
MluCI	AATT	4 cut(s)	210, 297, 304, 528
MlyI	GAGTC	2 cut(s)	365, 533
MmeI	TCCRAC	1 cut(s)	20
MroI	TCCGGA	1 cut(s)	67
MseI	TTAA	3 cut(s)	20, 303, 571
MslI	CAYNNNNRTG	1 cut(s)	142
MspCI	CTTAAG	1 cut(s)	19
MspI	CCGG	1 cut(s)	68
MunI	CAATTG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	3 cut(s)	10, 112, 184
NlaIII	CATG	5 cut(s)	63, 87, 145, 368, 524
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	481
PagI	TCATGA	2 cut(s)	364, 520
PfeI	GAWTC	3 cut(s)	64, 134, 242
PkrI	GCNGC	1 cut(s)	90
PleI	GAGTC	2 cut(s)	364, 532
PpsI	GAGTC	2 cut(s)	364, 532
PshBI	ATTAAT	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	2 cut(s)	216, 429
RsaNI	GTAC	2 cut(s)	215, 428
RseI	CAYNNNNRTG	1 cut(s)	142
SaqAI	TTAA	3 cut(s)	20, 303, 571
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	3 cut(s)	10, 112, 184
SchI	GAGTC	2 cut(s)	365, 533
SduI	GDGCHC	2 cut(s)	443, 567
SetI	ASST	8 cut(s)	372, 406, 415, 429, 454, 496, 502, 508
SmiMI	CAYNNNNRTG	1 cut(s)	142
SmlI	CTYRAG	2 cut(s)	19, 203
SmoI	CTYRAG	2 cut(s)	19, 203
Sse9I	AATT	4 cut(s)	210, 297, 304, 528
SsiI	CCGC	1 cut(s)	236
SspI	AATATT	2 cut(s)	130, 277
StyI	CCWWGG	1 cut(s)	423
TasI	AATT	4 cut(s)	210, 297, 304, 528
TatI	WGTACW	1 cut(s)	214
TfiI	GAWTC	3 cut(s)	64, 134, 242
Tru1I	TTAA	3 cut(s)	20, 303, 571
Tru9I	TTAA	3 cut(s)	20, 303, 571
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	6 cut(s)	48, 126, 130, 206, 423, 509
Vha464I	CTTAAG	1 cut(s)	19
VspI	ATTAAT	1 cut(s)	303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.