Rroxscaffold_6G00389900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001602
Physical Location & Seq
Forward (+)
4000603 .. 4002527
1925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389900.1

Sequence Viewer

Length: 1431 bp
ATGTGGGAGGATCCCAACTCAAGCATTTACAACAATGGTTGGACTAATGCCAACTCTTCGTGGAATCCGGAAGCGTTCAACTCATGGCAGCCTTATCAAGTCCCTATGTATGATCCTTATCATCACAATATTGATTCATTCATGTGGCCGTCATACCAAGAGCAAGCACCAGTCCTCTTGGTTGATCCAATGAAGCCCTCCCTTGAGGCAATTGTACAAGCAGTTGTGAAAAGTGCGGAAGAATCATCAAGGAATATGGACAAAGTTGTGGAGAATATTGAGCAACATATCCAACAAATTATTAATTCTTTGAACCAAGAAACAGAGGAGTGGGAAACACAATGTTGGGTTCAAGAGTCATATCATGAGGTGTTGACGAGTGAGGAAGAAGATTGGGCAGAAGCTAATGAGCCTTTGGAGGCCAAGGTACTTATGGAGTGCCCTCCTACACCTACTACAACTTTAGGGCAGTCCCTTGAAGTCACAGCCTTACCTCAACCTCATAATGTATTCCATGAGTCAATTTTGGATGAGGATGAGGATACAGATGTGGATGAGCCCTATGAAAAGAAACTTGAGGTTGAGACATATGAGGATTATGTGTTACATTATACAACCGAGTTTGAAGCATATGAAGATAGTGATATTGAAGAGTCCTTGACAGATGAGGAATTTTACATTAAAGAAAGTAAGGTTCAGCTTCATGCGAATGAGTACCAAGTGCCGGAAGCAATCATCATAGCTCATAAAGATCAAGAATACAAGGATGACATGGAGGATTGCTTAGAAGAGGAGTCCAGCAAATCTCCTATAGACGGGCCTCTAATTCTATCACATGCCCGACCACCTGACCATTACTTGCCACATTCGAGCTTTACATTTGTTCCCTCCATACAAGAAACTCTTGAGTTTGTGGATCATGTGGAGATGGTGATATGTCTCATAGTTGAGAAAGATTTAGAGGAGTCACTTTTTATCAAACCAGTTTTTCTGACGCCCAGATTTCAGTCCACTTTGAACAGCTGTCGTTCACAACTCCTTTGGAACCAACAGACGTACTATATATGGATCAAAATCCCCAGGTGTCTATTTTCTAATGGCTTTGGAAGATCCAAATTTCAGTTTTCACAGCGTCTGCAGTTTTCAGTTGAGTACAGGAGGTCGGAACAGAAAAGCAGAAAACTGGGCATCAGAGCCACATACAGGGCAAAACAGGGGATACTTCCGGGGGTCCAAATGAGGCAAAACTTATATGGATTCGAAGCTCCGGATGTCTATTTCACTCCTACCAAAGGGTCTCTAGTTTCTACATCCCTTGGAGTTGGAATGCGTGCCACATATGTATGGAAAGCCCTGAATATGAACTTTCATCTCCAAGTGGAACCTTTGGACTCCGGTTCCTACTGGATGCGCTATGAACCTCGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

476

Amino Acids

55.63

Weight (kDa)

4.56

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 67, 1267
AciI CCGC 1 cut(s) 236
AclWI GGATC 7 cut(s) 5, 18, 107, 179, 924, 1076, 1104
AcoI YGGCCR 1 cut(s) 146
AcsI RAATTY 2 cut(s) 671, 1115
AcyI GRCGYC 1 cut(s) 995
AfaI GTAC 5 cut(s) 216, 429, 716, 1058, 1154
AfiI CCNNNNNNNGG 4 cut(s) 724, 815, 1203, 1292
AgsI TTSAA 7 cut(s) 79, 313, 353, 479, 626, 650, 1018
AjnI CCWGG 1 cut(s) 1079
AluBI AGCT 6 cut(s) 404, 700, 743, 873, 1023, 1265
AluI AGCT 6 cut(s) 404, 700, 743, 873, 1023, 1265
Alw26I GTCTC 3 cut(s) 578, 944, 1302
AlwI GGATC 7 cut(s) 5, 18, 107, 179, 924, 1076, 1104
AlwNI CAGNNNCTG 1 cut(s) 1135
Aor13HI TCCGGA 2 cut(s) 67, 1267
AoxI GGCC 3 cut(s) 146, 420, 818
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 2 cut(s) 671, 1115
AseI ATTAAT 1 cut(s) 303
AspLEI GCGC 1 cut(s) 1413
AspS9I GGNCC 2 cut(s) 818, 1231
AsuC2I CCSGG 1 cut(s) 1227
AsuHPI GGTGA 1 cut(s) 943
AsuII TTCGAA 1 cut(s) 1260
AvaII GGWCC 1 cut(s) 1231
BaeGI GKGCMC 1 cut(s) 443
BaeI ACNNNNGTAYC 2 cut(s) 534, 567
BamHI GGATCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 561
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 922
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 1081
BciVI GTATCC 2 cut(s) 535, 1212
BcnI CCSGG 1 cut(s) 1227
BcoDI GTCTC 3 cut(s) 578, 944, 1302
BfaI CTAG 1 cut(s) 1301
BfmI CTRYAG 2 cut(s) 810, 1136
BfuI GTATCC 2 cut(s) 535, 1212
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 2 cut(s) 1081, 1227
Bme18I GGWCC 1 cut(s) 1231
BmgT120I GGNCC 2 cut(s) 818, 1231
BmiI GGNNCC 5 cut(s) 12, 1046, 1232, 1383, 1399
BmrFI CCNGG 2 cut(s) 1081, 1227
BmrI ACTGGG 1 cut(s) 1193
BmsI GCATC 2 cut(s) 1197, 1398
BmuI ACTGGG 1 cut(s) 1193
Bpu14I TTCGAA 1 cut(s) 1260
BpuEI CTTGAG 4 cut(s) 4, 224, 596, 926
BpuMI CCSGG 1 cut(s) 1227
BsaBI GATNNNNATC 2 cut(s) 117, 1073
BsaHI GRCGYC 1 cut(s) 995
BsaI GGTCTC 1 cut(s) 1302
BsaJI CCNNGG 5 cut(s) 423, 1079, 1226, 1315, 1421
BsaWI WCCGGW 3 cut(s) 67, 1267, 1394
Bsc4I CCNNNNNNNGG 4 cut(s) 724, 815, 1203, 1292
Bse1I ACTGG 4 cut(s) 170, 983, 1188, 1409
Bse8I GATNNNNATC 2 cut(s) 117, 1073
BseAI TCCGGA 2 cut(s) 67, 1267
BseBI CCWGG 1 cut(s) 1081
BseDI CCNNGG 5 cut(s) 423, 1079, 1226, 1315, 1421
BseGI GGATG 7 cut(s) 535, 541, 559, 772, 1276, 1310, 1413
BseJI GATNNNNATC 2 cut(s) 117, 1073
BseLI CCNNNNNNNGG 4 cut(s) 724, 815, 1203, 1292
BseNI ACTGG 4 cut(s) 170, 983, 1188, 1409
BseRI GAGGAG 3 cut(s) 341, 806, 977
BseSI GKGCMC 1 cut(s) 443
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 3 cut(s) 148, 422, 820
BsiSI CCGG 5 cut(s) 68, 725, 1226, 1268, 1395
BslFI GGGAC 2 cut(s) 86, 457
BslI CCNNNNNNNGG 4 cut(s) 724, 815, 1203, 1292
BsmAI GTCTC 3 cut(s) 578, 944, 1302
BsmFI GGGAC 2 cut(s) 86, 457
BsmI GAATGC 1 cut(s) 1332
BsnI GGCC 3 cut(s) 148, 422, 820
Bso31I GGTCTC 1 cut(s) 1302
Bsp119I TTCGAA 1 cut(s) 1260
Bsp1286I GDGCHC 2 cut(s) 443, 561
Bsp13I TCCGGA 2 cut(s) 67, 1267
Bsp1407I TGTACA 1 cut(s) 214
Bsp143I GATC 7 cut(s) 10, 112, 184, 751, 916, 1068, 1109
BspACI CCGC 1 cut(s) 236
BspANI GGCC 3 cut(s) 148, 422, 820
BspEI TCCGGA 2 cut(s) 67, 1267
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 5 cut(s) 12, 1046, 1232, 1383, 1399
BspMAI CTGCAG 1 cut(s) 1140
BspPI GGATC 7 cut(s) 5, 18, 107, 179, 924, 1076, 1104
BspT104I TTCGAA 1 cut(s) 1260
BspTNI GGTCTC 1 cut(s) 1302
BsrGI TGTACA 1 cut(s) 214
BsrI ACTGG 4 cut(s) 170, 983, 1188, 1409
BssECI CCNNGG 5 cut(s) 423, 1079, 1226, 1315, 1421
BssMI GATC 7 cut(s) 10, 112, 184, 751, 916, 1068, 1109
BssNI GRCGYC 1 cut(s) 995
BssT1I CCWWGG 2 cut(s) 423, 1315
Bst2UI CCWGG 1 cut(s) 1081
Bst6I CTCTTC 3 cut(s) 61, 645, 783
BstACI GRCGYC 1 cut(s) 995
BstAUI TGTACA 1 cut(s) 214
BstBI TTCGAA 1 cut(s) 1260
BstC8I GCNNGC 2 cut(s) 165, 1332
BstDEI CTNAG 1 cut(s) 784
BstENI CCTNNNNNAGG 1 cut(s) 1290
BstF5I GGATG 7 cut(s) 535, 541, 559, 772, 1276, 1310, 1413
BstHHI GCGC 1 cut(s) 1413
BstKTI GATC 7 cut(s) 13, 115, 187, 754, 919, 1071, 1112
BstMAI GTCTC 3 cut(s) 578, 944, 1302
BstMBI GATC 7 cut(s) 10, 112, 184, 751, 916, 1068, 1109
BstNI CCWGG 1 cut(s) 1081
BstNSI RCATGY 1 cut(s) 839
BstSCI CCNGG 2 cut(s) 1079, 1225
BstSFI CTRYAG 2 cut(s) 810, 1136
BstSLI GKGCMC 1 cut(s) 443
BstV1I GCAGC 1 cut(s) 100
BstX2I RGATCY 2 cut(s) 10, 1109
BstYI RGATCY 2 cut(s) 10, 1109
BsuI GTATCC 2 cut(s) 535, 1212
BsuRI GGCC 3 cut(s) 148, 422, 820
BtsCI GGATG 7 cut(s) 535, 541, 559, 772, 1276, 1310, 1413
Cac8I GCNNGC 2 cut(s) 165, 1332
CaiI CAGNNNCTG 1 cut(s) 1135
CciI TCATGA 1 cut(s) 364
CfoI GCGC 1 cut(s) 1413
Cfr13I GGNCC 2 cut(s) 818, 1231
CseI GACGC 2 cut(s) 1003, 1121
Csp6I GTAC 5 cut(s) 215, 428, 715, 1057, 1153
CviAII CATG 8 cut(s) 84, 142, 365, 515, 704, 772, 836, 920
CviQI GTAC 5 cut(s) 215, 428, 715, 1057, 1153
DdeI CTNAG 1 cut(s) 784
DpnI GATC 7 cut(s) 12, 114, 186, 753, 918, 1070, 1111
DpnII GATC 7 cut(s) 10, 112, 184, 751, 916, 1068, 1109
EaeI YGGCCR 1 cut(s) 146
Eam1104I CTCTTC 3 cut(s) 61, 645, 783
EarI CTCTTC 3 cut(s) 61, 645, 783
Eco130I CCWWGG 2 cut(s) 423, 1315
Eco24I GRGCYC 1 cut(s) 561
Eco31I GGTCTC 1 cut(s) 1302
Eco47I GGWCC 1 cut(s) 1231
EcoNI CCTNNNNNAGG 1 cut(s) 1290
EcoRII CCWGG 1 cut(s) 1079
EcoT14I CCWWGG 2 cut(s) 423, 1315
EcoT38I GRGCYC 1 cut(s) 561
ErhI CCWWGG 2 cut(s) 423, 1315
FaeI CATG 8 cut(s) 87, 145, 368, 518, 707, 775, 839, 923
FalI AAGNNNNNCTT 2 cut(s) 888, 920
FaqI GGGAC 2 cut(s) 86, 457
FatI CATG 8 cut(s) 83, 141, 364, 514, 703, 771, 835, 919
FauNDI CATATG 3 cut(s) 589, 631, 1339
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 7 cut(s) 542, 548, 566, 779, 1283, 1297, 1420
FriOI GRGCYC 1 cut(s) 561
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 1301
GlaI GCGC 1 cut(s) 1412
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 3 cut(s) 148, 422, 820
HapII CCGG 5 cut(s) 68, 725, 1226, 1268, 1395
HgaI GACGC 2 cut(s) 1003, 1121
HhaI GCGC 1 cut(s) 1413
Hin1I GRCGYC 1 cut(s) 995
Hin1II CATG 8 cut(s) 87, 145, 368, 518, 707, 775, 839, 923
Hin6I GCGC 1 cut(s) 1411
HinP1I GCGC 1 cut(s) 1411
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HpaII CCGG 5 cut(s) 68, 725, 1226, 1268, 1395
HphI GGTGA 1 cut(s) 943
Hpy166II GTNNAC 3 cut(s) 375, 1011, 1031
Hpy188I TCNGA 4 cut(s) 993, 1165, 1193, 1425
Hpy188III TCNNGA 6 cut(s) 68, 353, 365, 755, 905, 1268
Hpy8I GTNNAC 3 cut(s) 375, 1011, 1031
HpyCH4IV ACGT 1 cut(s) 1055
HpyCH4V TGCA 1 cut(s) 1138
HpyF3I CTNAG 1 cut(s) 784
HpySE526I ACGT 1 cut(s) 1055
Hsp92I GRCGYC 1 cut(s) 995
Hsp92II CATG 8 cut(s) 87, 145, 368, 518, 707, 775, 839, 923
HspAI GCGC 1 cut(s) 1411
Kpn2I TCCGGA 2 cut(s) 67, 1267
Kzo9I GATC 7 cut(s) 10, 112, 184, 751, 916, 1068, 1109
LmnI GCTCC 1 cut(s) 1270
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 2 cut(s) 1197, 1398
MaeI CTAG 1 cut(s) 1301
MaeII ACGT 1 cut(s) 1055
MaeIII GTNAC 3 cut(s) 481, 603, 966
MalI GATC 7 cut(s) 12, 114, 186, 753, 918, 1070, 1111
MboI GATC 7 cut(s) 10, 112, 184, 751, 916, 1068, 1109
MboII GAAGA 8 cut(s) 48, 251, 398, 401, 647, 662, 800, 1119
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 2 cut(s) 10, 1109
MhlI GDGCHC 2 cut(s) 443, 561
MluCI AATT 7 cut(s) 210, 297, 304, 522, 671, 825, 1115
MlyI GAGTC 6 cut(s) 365, 527, 662, 803, 974, 1385
MmeI TCCRAC 4 cut(s) 20, 316, 1143, 1303
MroI TCCGGA 2 cut(s) 67, 1267
MseI TTAA 2 cut(s) 303, 681
MslI CAYNNNNRTG 3 cut(s) 142, 708, 1342
MspA1I CMGCKG 1 cut(s) 1023
MspI CCGG 5 cut(s) 68, 725, 1226, 1268, 1395
MspR9I CCNGG 2 cut(s) 1081, 1227
MunI CAATTG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 1332
MvaI CCWGG 1 cut(s) 1081
NciI CCSGG 1 cut(s) 1227
NdeI CATATG 3 cut(s) 589, 631, 1339
NdeII GATC 7 cut(s) 10, 112, 184, 751, 916, 1068, 1109
NlaIII CATG 8 cut(s) 87, 145, 368, 518, 707, 775, 839, 923
NlaIV GGNNCC 5 cut(s) 12, 1046, 1232, 1383, 1399
NmuCI GTSAC 2 cut(s) 481, 966
NspI RCATGY 1 cut(s) 839
NspV TTCGAA 1 cut(s) 1260
PagI TCATGA 1 cut(s) 364
PctI GAATGC 1 cut(s) 1332
PfeI GAWTC 4 cut(s) 64, 134, 242, 1257
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 6 cut(s) 364, 526, 661, 802, 973, 1385
PpsI GAGTC 6 cut(s) 364, 526, 661, 802, 973, 1385
PshBI ATTAAT 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 1079
PspGI CCWGG 1 cut(s) 1079
PspN4I GGNNCC 5 cut(s) 12, 1046, 1232, 1383, 1399
PspPI GGNCC 2 cut(s) 818, 1231
PstI CTGCAG 1 cut(s) 1140
PstNI CAGNNNCTG 1 cut(s) 1135
PsuI RGATCY 2 cut(s) 10, 1109
PvuII CAGCTG 1 cut(s) 1023
RsaI GTAC 5 cut(s) 216, 429, 716, 1058, 1154
RsaNI GTAC 5 cut(s) 215, 428, 715, 1057, 1153
RseI CAYNNNNRTG 3 cut(s) 142, 708, 1342
SaqAI TTAA 2 cut(s) 303, 681
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 7 cut(s) 10, 112, 184, 751, 916, 1068, 1109
Sau96I GGNCC 2 cut(s) 818, 1231
SchI GAGTC 6 cut(s) 365, 527, 662, 803, 974, 1385
ScrFI CCNGG 2 cut(s) 1081, 1227
SduI GDGCHC 2 cut(s) 443, 561
SfaNI GCATC 2 cut(s) 1197, 1398
SfcI CTRYAG 2 cut(s) 810, 1136
SfuI TTCGAA 1 cut(s) 1260
SinI GGWCC 1 cut(s) 1231
SmiMI CAYNNNNRTG 3 cut(s) 142, 708, 1342
SmlI CTYRAG 4 cut(s) 19, 203, 575, 905
SmoI CTYRAG 4 cut(s) 19, 203, 575, 905
Sse9I AATT 7 cut(s) 210, 297, 304, 522, 671, 825, 1115
SsiI CCGC 1 cut(s) 236
SspI AATATT 2 cut(s) 130, 277
SspMI CTAG 1 cut(s) 1301
StyD4I CCNGG 2 cut(s) 1079, 1225
StyI CCWWGG 2 cut(s) 423, 1315
TaiI ACGT 1 cut(s) 1058
TaqI TCGA 2 cut(s) 869, 1260
TasI AATT 7 cut(s) 210, 297, 304, 522, 671, 825, 1115
TatI WGTACW 2 cut(s) 214, 1152
TfiI GAWTC 4 cut(s) 64, 134, 242, 1257
Tru1I TTAA 2 cut(s) 303, 681
Tru9I TTAA 2 cut(s) 303, 681
TseFI GTSAC 2 cut(s) 481, 966
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 2 cut(s) 481, 966
TspDTI ATGAA 9 cut(s) 126, 130, 206, 579, 648, 692, 1358, 1376, 1431
VpaK11BI GGWCC 1 cut(s) 1231
VspI ATTAAT 1 cut(s) 303
XagI CCTNNNNNAGG 1 cut(s) 1290
XapI RAATTY 2 cut(s) 671, 1115
XceI RCATGY 1 cut(s) 839
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XspI CTAG 1 cut(s) 1301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.