RLG00000002772

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001602
Physical Location & Seq
Forward (+)
39525716 .. 39528727
3012 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002772

Sequence Viewer

Length: 333 bp
ATGCAGTTTGAGTTGACTCCGGACGACTCCGACATAGTAGTGAAGCCGATTGAAGGATTCGTCGTGTTGGTGACGGTCAGTTGGTTGGTGAAGGCTGGTGGTCGCCGTCGTTCAAAATCGGCTCATCTTCGATCTGGTCCAGGAGCTGACCTTCCCTCTCGCCGGATTATTGAAACCCCAAGGCAGCCACAAAAAAGTATTGATTTTGATGAAGAATTTGGAGATGAATATCAGAGCTTGGTAATGCTCGGGAGACTTGATCCGGCTGGTCACAATGCATGTTTGGGTAGTGAAACAACATGGACTTCAAGCAATCAGGTCTTGCGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.25

Weight (kDa)

6.09

Isoelectric Point (pI)

73.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 19
AciI CCGC 1 cut(s) 325
AclWI GGATC 1 cut(s) 254
AcsI RAATTY 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 53, 162
AgsI TTSAA 4 cut(s) 53, 114, 173, 309
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 2 cut(s) 146, 237
AluI AGCT 2 cut(s) 146, 237
Alw26I GTCTC 1 cut(s) 247
AlwI GGATC 1 cut(s) 254
AlwNI CAGNNNCTG 1 cut(s) 146
Ama87I CYCGRG 1 cut(s) 248
Aor13HI TCCGGA 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 82, 100
AvaI CYCGRG 1 cut(s) 248
AvaII GGWCC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 247
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 141
Bme18I GGWCC 1 cut(s) 137
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 162
Bse8I GATNNNNATC 1 cut(s) 228
BseAI TCCGGA 1 cut(s) 19
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 179
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 53, 162
BseXI GCAGC 1 cut(s) 196
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 3 cut(s) 20, 163, 263
BslI CCNNNNNNNGG 2 cut(s) 53, 162
BsmAI GTCTC 1 cut(s) 247
BsoBI CYCGRG 1 cut(s) 248
Bsp13I TCCGGA 1 cut(s) 19
Bsp143I GATC 2 cut(s) 131, 259
BspACI CCGC 1 cut(s) 325
BspEI TCCGGA 1 cut(s) 19
BspPI GGATC 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 2 cut(s) 131, 259
BssT1I CCWWGG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 76
BstKTI GATC 2 cut(s) 134, 262
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 2 cut(s) 131, 259
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 196
CaiI CAGNNNCTG 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 137
CviAII CATG 2 cut(s) 279, 300
CviJI RGCY 7 cut(s) 46, 95, 122, 146, 187, 237, 266
CviKI_1 RGCY 7 cut(s) 46, 95, 122, 146, 187, 237, 266
DpnI GATC 2 cut(s) 133, 261
DpnII GATC 2 cut(s) 131, 259
Eco130I CCWWGG 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 137
Eco88I CYCGRG 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 179
EcoT22I ATGCAT 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 2 cut(s) 282, 303
FaiI YATR 3 cut(s) 35, 280, 301
FatI CATG 2 cut(s) 278, 299
Fnu4HI GCNGC 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 185
HapII CCGG 3 cut(s) 20, 163, 263
Hin1II CATG 2 cut(s) 282, 303
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 3 cut(s) 16, 26, 57
HpaII CCGG 3 cut(s) 20, 163, 263
HphI GGTGA 2 cut(s) 82, 100
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 2 cut(s) 31, 234
Hpy188III TCNNGA 2 cut(s) 20, 250
Hpy8I GTNNAC 1 cut(s) 15
Hpy99I CGWCG 2 cut(s) 65, 111
HpyAV CCTTC 3 cut(s) 47, 85, 161
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 4, 278
Hsp92II CATG 2 cut(s) 282, 303
Kpn2I TCCGGA 1 cut(s) 19
Kzo9I GATC 2 cut(s) 131, 259
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 9 cut(s) 33, 81, 120, 126, 153, 176, 252, 276, 302
Lsp1109I GCAGC 1 cut(s) 196
MaeIII GTNAC 2 cut(s) 70, 269
MalI GATC 2 cut(s) 133, 261
MboI GATC 2 cut(s) 131, 259
MboII GAAGA 2 cut(s) 119, 224
MluCI AATT 1 cut(s) 215
MlyI GAGTC 2 cut(s) 10, 20
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 1 cut(s) 166
Mph1103I ATGCAT 1 cut(s) 280
MroI TCCGGA 1 cut(s) 19
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 3 cut(s) 20, 163, 263
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
NdeII GATC 2 cut(s) 131, 259
NlaIII CATG 2 cut(s) 282, 303
NmuCI GTSAC 2 cut(s) 70, 269
NsiI ATGCAT 1 cut(s) 280
NspI RCATGY 1 cut(s) 282
PfeI GAWTC 1 cut(s) 57
PfoI TCCNGGA 1 cut(s) 139
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 2 cut(s) 10, 20
PpsI GAGTC 2 cut(s) 10, 20
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspPI GGNCC 1 cut(s) 137
PstNI CAGNNNCTG 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 38
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 2 cut(s) 131, 259
Sau96I GGNCC 1 cut(s) 137
SchI GAGTC 2 cut(s) 10, 20
ScrFI CCNGG 1 cut(s) 141
SetI ASST 4 cut(s) 148, 153, 239, 321
SinI GGWCC 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 1 cut(s) 215
SsiI CCGC 1 cut(s) 325
StyD4I CCNGG 1 cut(s) 139
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 1 cut(s) 130
TasI AATT 1 cut(s) 215
TfiI GAWTC 1 cut(s) 57
TseFI GTSAC 2 cut(s) 70, 269
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 2 cut(s) 70, 269
TspDTI ATGAA 2 cut(s) 225, 240
VpaK11BI GGWCC 1 cut(s) 137
XapI RAATTY 1 cut(s) 215
XceI RCATGY 1 cut(s) 282
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.