Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Forward (+)

12669399 .. 12670529

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00392890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGAGACATGTCCAAGCATCCAATATCAAGGATACTATGATGAAAATACCATGCTTGGAGGATTTCATGACAACCAAGGGCATTGGAATAATTATTATTCACCTCGATACAATCCGGCATGGGATAATCCTCCTTACTCTTCGTGGAATGACGATCCAAACATGCAACAAGGATCTTTCAATGAGTTTGGAGCTTCCCCATATTCATACCATGACTATTGTCCACAAGCACCTCCTCCTCAAAACTCAGGTATGTCTAATAATTATGATGAGATTATTAAGGAACTAAATGCTGCTACTCAAGTTTTGATTCGGGGACAACAAGCTTCGGATGCTTCTTTTCAAGCTTGGATTCGGGAAAAGCAAGCTCTTGATGATGATTTGGCAGAAAAACTAAAGCGTTTGGAGAACTTTATATCTCGGGAGCACCCTTCTAAACCGATGGCAACTTTAGGGGAGCTCCCGACAACTATAGTTTTGTGTCAACCTCATGATGCAGTCCATGATTCAACATTTGATGAGGATGAAGTAATGGATTTGGAGGAGTCTTATAAAGAGCCACTCAACGTTGAGACTTTTGAGGATCACTACATGACCGAGCTTGAAAAGTGGGAAATGGAAGATCCATTTGATGATGAGGAATCCTATCATGAAGAAAGTAAGGATGAGCTTCATGCAAATGTGCCCCAAGTGCCTGAAACAATCATGTTACCTAATGAAGATCCAAAAGGATATGAGGCCACAAGGGAGAATTGCTTAAAAGAGGAGTCCATCAAAGCTCCTACATTTGGACCTTTATTGCTAGCACATGGAAGACCATCTGATCCTACAACGCCTCATTCAACCTCTACACATGTTCTCCACATCCAACCAATGGTTGAGTTTGTTGATCATGTGGAGATGGTCATAAGTGAACATCTCAAATCACATAAGGAGATCATTGTAGCCGTGATTGTTGAACTTAAGAGAAGAAGGGGACAATGGAAGAAGAGAAAGAAAAAGAGAAGCATCAAATCCTATCTTTCCATTGCTCCCAAGTTACATAAGTTGCTAGAAAGGGCCCATGAAACATCTTTGAAGATGCTTAAGCATCTGATCGAACCGCGGCCTAAACCTCCCGATTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag rve

Protein Analysis

376

Amino Acids

43.56

Weight (kDa)

5.11

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
AccB7I	CCANNNNNTGG	1 cut(s)	874
AccII	CGCG	1 cut(s)	1105
AciI	CCGC	2 cut(s)	1103, 1105
AclI	AACGTT	1 cut(s)	567
AclWI	GGATC	6 cut(s)	149, 181, 591, 617, 716, 818
AfiI	CCNNNNNNNGG	2 cut(s)	788, 874
AflII	CTTAAG	2 cut(s)	962, 1085
AflIII	ACRYGT	2 cut(s)	8, 853
AgsI	TTSAA	7 cut(s)	181, 344, 510, 605, 843, 959, 1078
AluBI	AGCT	8 cut(s)	194, 326, 347, 368, 460, 601, 670, 779
AluI	AGCT	8 cut(s)	194, 326, 347, 368, 460, 601, 670, 779
Alw21I	GWGCWC	2 cut(s)	429, 462
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	6 cut(s)	149, 181, 591, 617, 716, 818
Ama87I	CYCGRG	1 cut(s)	420
AoxI	GGCC	3 cut(s)	738, 1059, 1106
ApaI	GGGCCC	1 cut(s)	1063
ApeKI	GCWGC	1 cut(s)	293
AspS9I	GGNCC	3 cut(s)	791, 1059, 1060
AsuHPI	GGTGA	1 cut(s)	93
AsuNHI	GCTAGC	1 cut(s)	802
AvaI	CYCGRG	1 cut(s)	420
AvaII	GGWCC	1 cut(s)	791
BaeGI	GKGCMC	2 cut(s)	687, 1063
BanII	GRGCYC	2 cut(s)	462, 1063
BbsI	GAAGAC	1 cut(s)	820
Bbv12I	GWGCWC	2 cut(s)	429, 462
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	4 cut(s)	436, 779, 826, 895
BceAI	ACGGC	1 cut(s)	932
BciVI	GTATCC	1 cut(s)	26
BclI	TGATCA	1 cut(s)	889
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	2 cut(s)	803, 1052
BfmI	CTRYAG	1 cut(s)	471
BfrI	CTTAAG	2 cut(s)	962, 1085
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	2 cut(s)	294, 1106
BlsI	GCNGC	2 cut(s)	295, 1107
Bme18I	GGWCC	1 cut(s)	791
BmeT110I	CYCGRG	1 cut(s)	420
BmgT120I	GGNCC	3 cut(s)	791, 1059, 1060
BmiI	GGNNCC	1 cut(s)	1061
BmsI	GCATC	6 cut(s)	27, 322, 484, 1017, 1071, 1099
BmtI	GCTAGC	1 cut(s)	806
BoxI	GACNNNNGTC	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	820
BpuEI	CTTGAG	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	76, 1103
BsaXI	ACNNNNNCTCC	2 cut(s)	843, 873
Bsc4I	CCNNNNNNNGG	2 cut(s)	788, 874
Bse3DI	GCAATG	1 cut(s)	1026
BseDI	CCNNGG	2 cut(s)	76, 1103
BseGI	GGATG	5 cut(s)	18, 337, 529, 670, 864
BseLI	CCNNNNNNNGG	2 cut(s)	788, 874
BseMI	GCAATG	1 cut(s)	1026
BseMII	CTCAG	1 cut(s)	261
BseRI	GAGGAG	4 cut(s)	225, 228, 557, 779
BseSI	GKGCMC	2 cut(s)	687, 1063
BseXI	GCAGC	1 cut(s)	280
Bsh1236I	CGCG	1 cut(s)	1105
BshFI	GGCC	3 cut(s)	740, 1061, 1108
BsiHKAI	GWGCWC	2 cut(s)	429, 462
BsiHKCI	CYCGRG	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	2 cut(s)	330, 990
BslI	CCNNNNNNNGG	2 cut(s)	788, 874
BsmAI	GTCTC	1 cut(s)	566
BsmFI	GGGAC	2 cut(s)	330, 990
BsnI	GGCC	3 cut(s)	740, 1061, 1108
BsoBI	CYCGRG	1 cut(s)	420
Bsp120I	GGGCCC	1 cut(s)	1059
Bsp1286I	GDGCHC	4 cut(s)	429, 462, 687, 1063
Bsp143I	GATC	9 cut(s)	154, 173, 583, 622, 721, 823, 889, 936, 1095
BspACI	CCGC	2 cut(s)	1103, 1105
BspANI	GGCC	3 cut(s)	740, 1061, 1108
BspCNI	CTCAG	1 cut(s)	260
BspFNI	CGCG	1 cut(s)	1105
BspHI	TCATGA	3 cut(s)	67, 490, 649
BspLI	GGNNCC	1 cut(s)	1061
BspOI	GCTAGC	1 cut(s)	806
BspPI	GGATC	6 cut(s)	149, 181, 591, 617, 716, 818
BspTI	CTTAAG	2 cut(s)	962, 1085
BsrDI	GCAATG	1 cut(s)	1026
BssECI	CCNNGG	2 cut(s)	76, 1103
BssMI	GATC	9 cut(s)	154, 173, 583, 622, 721, 823, 889, 936, 1095
BssT1I	CCWWGG	1 cut(s)	76
Bst6I	CTCTTC	2 cut(s)	145, 983
BstAFI	CTTAAG	2 cut(s)	962, 1085
BstC8I	GCNNGC	2 cut(s)	366, 804
BstDEI	CTNAG	1 cut(s)	247
BstDSI	CCRYGG	1 cut(s)	1103
BstF5I	GGATG	5 cut(s)	18, 337, 529, 670, 864
BstFNI	CGCG	1 cut(s)	1105
BstKTI	GATC	9 cut(s)	157, 176, 586, 625, 724, 826, 892, 939, 1098
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	9 cut(s)	154, 173, 583, 622, 721, 823, 889, 936, 1095
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 691
BstNSI	RCATGY	3 cut(s)	12, 166, 857
BstPAI	GACNNNNGTC	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	471
BstSLI	GKGCMC	2 cut(s)	687, 1063
BstUI	CGCG	1 cut(s)	1105
BstV1I	GCAGC	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	820
BstX2I	RGATCY	3 cut(s)	173, 622, 721
BstYI	RGATCY	3 cut(s)	173, 622, 721
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	3 cut(s)	740, 1061, 1108
BtgI	CCRYGG	1 cut(s)	1103
BtsCI	GGATG	5 cut(s)	18, 337, 529, 670, 864
Cac8I	GCNNGC	2 cut(s)	366, 804
CciI	TCATGA	3 cut(s)	67, 490, 649
Cfr13I	GGNCC	3 cut(s)	791, 1059, 1060
Cfr42I	CCGCGG	1 cut(s)	1106
DdeI	CTNAG	1 cut(s)	247
DpnI	GATC	9 cut(s)	156, 175, 585, 624, 723, 825, 891, 938, 1097
DpnII	GATC	9 cut(s)	154, 173, 583, 622, 721, 823, 889, 936, 1095
Eam1104I	CTCTTC	2 cut(s)	145, 983
EarI	CTCTTC	2 cut(s)	145, 983
Ecl136II	GAGCTC	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	2 cut(s)	462, 1063
Eco47I	GGWCC	1 cut(s)	791
Eco53kI	GAGCTC	1 cut(s)	460
Eco88I	CYCGRG	1 cut(s)	420
EcoICRI	GAGCTC	1 cut(s)	460
EcoO109I	RGGNCCY	1 cut(s)	1059
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	2 cut(s)	462, 1063
ErhI	CCWWGG	1 cut(s)	76
FaqI	GGGAC	2 cut(s)	330, 990
FbaI	TGATCA	1 cut(s)	889
Fnu4HI	GCNGC	2 cut(s)	294, 1106
FokI	GGATG	5 cut(s)	5, 344, 536, 677, 851
FriOI	GRGCYC	2 cut(s)	462, 1063
Fsp4HI	GCNGC	2 cut(s)	294, 1106
FspBI	CTAG	2 cut(s)	803, 1052
GluI	GCNGC	2 cut(s)	294, 1106
HaeIII	GGCC	3 cut(s)	740, 1061, 1108
HapII	CCGG	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	485
HindII	GTYRAC	1 cut(s)	485
HindIII	AAGCTT	2 cut(s)	324, 345
HinfI	GANTC	6 cut(s)	310, 352, 506, 545, 641, 767
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	1 cut(s)	93
Hpy166II	GTNNAC	3 cut(s)	224, 485, 914
Hpy188I	TCNGA	3 cut(s)	331, 823, 1095
Hpy188III	TCNNGA	9 cut(s)	68, 356, 371, 422, 463, 491, 650, 1118, 1128
Hpy8I	GTNNAC	3 cut(s)	224, 485, 914
HpyAV	CCTTC	2 cut(s)	441, 966
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	3 cut(s)	166, 497, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 691
HpyF3I	CTNAG	1 cut(s)	247
HpySE526I	ACGT	1 cut(s)	567
Ksp22I	TGATCA	1 cut(s)	889
KspI	CCGCGG	1 cut(s)	1106
Kzo9I	GATC	9 cut(s)	154, 173, 583, 622, 721, 823, 889, 936, 1095
LmnI	GCTCC	6 cut(s)	191, 424, 457, 465, 784, 1036
LpnPI	CCDG	3 cut(s)	129, 234, 708
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	6 cut(s)	27, 322, 484, 1017, 1071, 1099
MaeI	CTAG	2 cut(s)	803, 1052
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	2 cut(s)	708, 1038
MalI	GATC	9 cut(s)	156, 175, 585, 624, 723, 825, 891, 938, 1097
MboI	GATC	9 cut(s)	154, 173, 583, 622, 721, 823, 889, 936, 1095
MboII	GAAGA	9 cut(s)	132, 632, 665, 731, 825, 981, 997, 1000, 1090
MflI	RGATCY	3 cut(s)	173, 622, 721
MhlI	GDGCHC	4 cut(s)	429, 462, 687, 1063
MluCI	AATT	3 cut(s)	91, 262, 751
MlyI	GAGTC	2 cut(s)	554, 776
MmeI	TCCRAC	1 cut(s)	892
MseI	TTAA	4 cut(s)	279, 758, 963, 1086
MslI	CAYNNNNRTG	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	1105
MspCI	CTTAAG	2 cut(s)	962, 1085
MspI	CCGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	1105
MwoI	GCNNNNNNNGC	2 cut(s)	332, 691
NdeII	GATC	9 cut(s)	154, 173, 583, 622, 721, 823, 889, 936, 1095
NheI	GCTAGC	1 cut(s)	802
NlaIV	GGNNCC	1 cut(s)	1061
NspI	RCATGY	3 cut(s)	12, 166, 857
PagI	TCATGA	3 cut(s)	67, 490, 649
PciI	ACATGT	2 cut(s)	8, 853
PfeI	GAWTC	4 cut(s)	310, 352, 506, 641
PflMI	CCANNNNNTGG	1 cut(s)	874
PkrI	GCNGC	2 cut(s)	295, 1107
PleI	GAGTC	2 cut(s)	553, 775
PpsI	GAGTC	2 cut(s)	553, 775
PscI	ACATGT	2 cut(s)	8, 853
PshAI	GACNNNNGTC	1 cut(s)	219
PsiI	TTATAA	1 cut(s)	552
Psp124BI	GAGCTC	1 cut(s)	462
Psp1406I	AACGTT	1 cut(s)	567
PspN4I	GGNNCC	1 cut(s)	1061
PspOMI	GGGCCC	1 cut(s)	1059
PspPI	GGNCC	3 cut(s)	791, 1059, 1060
PsuI	RGATCY	3 cut(s)	173, 622, 721
RseI	CAYNNNNRTG	1 cut(s)	678
SacI	GAGCTC	1 cut(s)	462
SacII	CCGCGG	1 cut(s)	1106
SaqAI	TTAA	4 cut(s)	279, 758, 963, 1086
SatI	GCNGC	2 cut(s)	294, 1106
Sau3AI	GATC	9 cut(s)	154, 173, 583, 622, 721, 823, 889, 936, 1095
Sau96I	GGNCC	3 cut(s)	791, 1059, 1060
SchI	GAGTC	2 cut(s)	554, 776
SduI	GDGCHC	4 cut(s)	429, 462, 687, 1063
SfaNI	GCATC	6 cut(s)	27, 322, 484, 1017, 1071, 1099
SfcI	CTRYAG	1 cut(s)	471
Sfr303I	CCGCGG	1 cut(s)	1106
SgrBI	CCGCGG	1 cut(s)	1106
SinI	GGWCC	1 cut(s)	791
SmiMI	CAYNNNNRTG	1 cut(s)	678
SmlI	CTYRAG	3 cut(s)	300, 962, 1085
SmoI	CTYRAG	3 cut(s)	300, 962, 1085
Sse9I	AATT	3 cut(s)	91, 262, 751
SsiI	CCGC	2 cut(s)	1103, 1105
SspMI	CTAG	2 cut(s)	803, 1052
SstI	GAGCTC	1 cut(s)	462
StyI	CCWWGG	1 cut(s)	76
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	2 cut(s)	106, 1098
TaqII	GACCGA	1 cut(s)	611
TasI	AATT	3 cut(s)	91, 262, 751
TauI	GCSGC	1 cut(s)	1108
TfiI	GAWTC	4 cut(s)	310, 352, 506, 641
Tru1I	TTAA	4 cut(s)	279, 758, 963, 1086
Tru9I	TTAA	4 cut(s)	279, 758, 963, 1086
TseI	GCWGC	1 cut(s)	293
TspDTI	ATGAA	8 cut(s)	56, 57, 195, 540, 662, 666, 732, 1080
Van91I	CCANNNNNTGG	1 cut(s)	874
Vha464I	CTTAAG	2 cut(s)	962, 1085
VpaK11BI	GGWCC	1 cut(s)	791
XceI	RCATGY	3 cut(s)	12, 166, 857
XspI	CTAG	2 cut(s)	803, 1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.