Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Reverse (-)

15763833 .. 15765497

Gene Structure 1665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00394900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAGACATGTCCAAGCTTCCAATATCAAGGATACTATGATCAAAATACCATGCTTGGAGGATTTCAAGACAACCAAAGGCATTGGAATAATTACTATTCTCCTTCATACAATCCAGCACGGGAAAATCCTCCTTACTCTTTGTGGAATGACGATCCAAACGTGCAACAAGGATTTTTCAATGAGTTCGAAGATTCTCCATATTCATACCATGACTATTGGCCACAAGCCCCACCTCCTCAAAACTCAGGTATGTCTAATACTGATGATGAGATTATTAAGGAACTAAATGCTGCTACTCAAGCTTTGATTCGGGGACAACAAGCATCGGATGCTTCTTTTCAAGCTTGGATTCTGGAAAAGCAAGCTCTTGATGATGATTTGGCAGAAAAACTAAAGCGTTTAGAGAACTTAATATCTCAGGAGCACCCTTCTAAACAGATGGCAACTTTAGGGGAGCTCCCAACAACTACGGCTTTGTGTCAACCTCATGATGCAGTCCATGATTCAACATTTGATGAGGATGAAGTAATGGATTTGGAGGAGTCATATAAAGAGCAACTCAATGTTGAGACTTGTGAGGACTATGAACTATGCTACATAACCGAGCTTGAAAAGTGGGAAATGGAAGATCCCTTTGATGATGAGGAATCCTATCATGAAGAAAGTAAGGATGAGCTTCATGCAAATGTGCCCCAAGTGCCTGAAACAATCATGTTACCTAATGAAGGTCCAAAAGGATATGAGGCCACAAGGGAGGATTGCTTAAAAAAGGAGTCCATCAAAGCTCCTACATTTGGACCTTTATTGCTAGCACATGGAATACCATCTGATCCTTCAATGCCTCATTCAAGCTCTACACATGTTCTCCCCATCCAAGCAAATAAGGTCAGTCCAGGAAAACAGAAAACTGTGCAGTTGTGTCACAGAAAAGGAAAAACTGGGCGTATTTCCGTGGTTCAAATGAGGAGTTCTTTACATGTCCTCAAAGCTCTATATGTATACTACCTTCAGGCCAAAAATCTCGTCCATTGCACCAGTGATGCTCCCGGAATAAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag rve

Protein Analysis

354

Amino Acids

40.36

Weight (kDa)

4.66

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1002
AclWI	GGATC	3 cut(s)	149, 626, 827
AcoI	YGGCCR	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	995
AfiI	CCNNNNNNNGG	2 cut(s)	728, 797
AflIII	ACRYGT	3 cut(s)	8, 862, 979
AgsI	TTSAA	8 cut(s)	68, 181, 344, 510, 614, 840, 852, 962
AjnI	CCWGG	1 cut(s)	895
Alw21I	GWGCWC	2 cut(s)	429, 462
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	3 cut(s)	149, 626, 827
AoxI	GGCC	3 cut(s)	221, 747, 1014
ApeKI	GCWGC	1 cut(s)	293
ArsI	GACNNNNNNTTYG	2 cut(s)	1011, 1043
AspS9I	GGNCC	2 cut(s)	731, 800
AsuC2I	CCSGG	1 cut(s)	1050
AsuII	TTCGAA	1 cut(s)	189
AsuNHI	GCTAGC	1 cut(s)	811
AvaII	GGWCC	2 cut(s)	731, 800
BaeGI	GKGCMC	1 cut(s)	696
BalI	TGGCCA	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	462
BarI	GAAGNNNNNNTAC	2 cut(s)	993, 1025
Bbv12I	GWGCWC	2 cut(s)	429, 462
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	4 cut(s)	436, 788, 835, 881
BceAI	ACGGC	1 cut(s)	489
BciT130I	CCWGG	1 cut(s)	897
BciVI	GTATCC	1 cut(s)	26
BclI	TGATCA	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	1050
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	1 cut(s)	812
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	2 cut(s)	897, 1050
Bme18I	GGWCC	2 cut(s)	731, 800
BmgT120I	GGNCC	2 cut(s)	731, 800
BmrFI	CCNGG	2 cut(s)	897, 1050
BmrI	ACTGGG	1 cut(s)	951
BmsI	GCATC	4 cut(s)	322, 335, 484, 1033
BmtI	GCTAGC	1 cut(s)	815
BmuI	ACTGGG	1 cut(s)	951
Bpu14I	TTCGAA	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	1050
BsaJI	CCNNGG	1 cut(s)	954
BsaXI	ACNNNNNCTCC	2 cut(s)	852, 882
Bsc4I	CCNNNNNNNGG	2 cut(s)	728, 797
Bse1I	ACTGG	2 cut(s)	946, 1038
Bse3DI	GCAATG	1 cut(s)	1030
BseBI	CCWGG	1 cut(s)	897
BseDI	CCNNGG	1 cut(s)	954
BseGI	GGATG	4 cut(s)	337, 529, 679, 873
BseLI	CCNNNNNNNGG	2 cut(s)	728, 797
BseMI	GCAATG	1 cut(s)	1030
BseMII	CTCAG	2 cut(s)	261, 434
BseNI	ACTGG	2 cut(s)	946, 1038
BseRI	GAGGAG	3 cut(s)	228, 557, 982
BseSI	GKGCMC	1 cut(s)	696
BseXI	GCAGC	1 cut(s)	280
BsgI	GTGCAG	1 cut(s)	935
BshFI	GGCC	3 cut(s)	223, 749, 1016
BsiHKAI	GWGCWC	2 cut(s)	429, 462
BsiSI	CCGG	1 cut(s)	1050
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	2 cut(s)	728, 797
BsmAI	GTCTC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	3 cut(s)	223, 749, 1016
Bsp119I	TTCGAA	1 cut(s)	189
Bsp1286I	GDGCHC	3 cut(s)	429, 462, 696
Bsp143I	GATC	4 cut(s)	40, 154, 631, 832
BspANI	GGCC	3 cut(s)	223, 749, 1016
BspCNI	CTCAG	2 cut(s)	260, 433
BspHI	TCATGA	2 cut(s)	490, 658
BspOI	GCTAGC	1 cut(s)	815
BspPI	GGATC	3 cut(s)	149, 626, 827
BspT104I	TTCGAA	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	1030
BsrI	ACTGG	2 cut(s)	946, 1038
BssECI	CCNNGG	1 cut(s)	954
BssMI	GATC	4 cut(s)	40, 154, 631, 832
BssNAI	GTATAC	1 cut(s)	1003
Bst1107I	GTATAC	1 cut(s)	1003
Bst2UI	CCWGG	1 cut(s)	897
Bst4CI	ACNGT	1 cut(s)	913
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	366, 813
BstDEI	CTNAG	2 cut(s)	247, 420
BstDSI	CCRYGG	1 cut(s)	954
BstENI	CCTNNNNNAGG	1 cut(s)	726
BstF5I	GGATG	4 cut(s)	337, 529, 679, 873
BstKTI	GATC	4 cut(s)	43, 157, 634, 835
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	4 cut(s)	40, 154, 631, 832
BstMWI	GCNNNNNNNGC	3 cut(s)	302, 332, 700
BstNI	CCWGG	1 cut(s)	897
BstNSI	RCATGY	3 cut(s)	12, 866, 983
BstSCI	CCNGG	2 cut(s)	895, 1048
BstSLI	GKGCMC	1 cut(s)	696
BstV1I	GCAGC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BstZ17I	GTATAC	1 cut(s)	1003
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	3 cut(s)	223, 749, 1016
BtgI	CCRYGG	1 cut(s)	954
BtsCI	GGATG	4 cut(s)	337, 529, 679, 873
BtsIMutI	CAGTG	1 cut(s)	1045
Cac8I	GCNNGC	2 cut(s)	366, 813
CciI	TCATGA	2 cut(s)	490, 658
Cfr13I	GGNCC	2 cut(s)	731, 800
DdeI	CTNAG	2 cut(s)	247, 420
DpnI	GATC	4 cut(s)	42, 156, 633, 834
DpnII	GATC	4 cut(s)	40, 154, 631, 832
EaeI	YGGCCR	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	462
Eco47I	GGWCC	2 cut(s)	731, 800
Eco53kI	GAGCTC	1 cut(s)	460
Eco57I	CTGAAG	1 cut(s)	995
EcoICRI	GAGCTC	1 cut(s)	460
EcoNI	CCTNNNNNAGG	1 cut(s)	726
EcoRII	CCWGG	1 cut(s)	895
EcoT38I	GRGCYC	1 cut(s)	462
FaqI	GGGAC	1 cut(s)	330
FbaI	TGATCA	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	1002
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	4 cut(s)	344, 536, 686, 860
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	812
GluI	GCNGC	1 cut(s)	294
HaeIII	GGCC	3 cut(s)	223, 749, 1016
HapII	CCGG	1 cut(s)	1050
HincII	GTYRAC	1 cut(s)	485
HindII	GTYRAC	1 cut(s)	485
HindIII	AAGCTT	3 cut(s)	16, 303, 345
HinfI	GANTC	7 cut(s)	194, 310, 352, 506, 545, 650, 776
HpaII	CCGG	1 cut(s)	1050
Hpy166II	GTNNAC	2 cut(s)	485, 1003
Hpy188I	TCNGA	2 cut(s)	331, 832
Hpy188III	TCNNGA	6 cut(s)	68, 356, 371, 422, 491, 659
Hpy8I	GTNNAC	2 cut(s)	485, 1003
HpyAV	CCTTC	5 cut(s)	114, 441, 722, 846, 1019
HpyCH4III	ACNGT	1 cut(s)	913
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	5 cut(s)	166, 497, 686, 916, 1035
HpyF10VI	GCNNNNNNNGC	3 cut(s)	302, 332, 700
HpyF3I	CTNAG	2 cut(s)	247, 420
HpySE526I	ACGT	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	40, 154, 631, 832
LmnI	GCTCC	5 cut(s)	424, 457, 465, 793, 1051
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	4 cut(s)	322, 335, 484, 1033
MaeI	CTAG	1 cut(s)	812
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	2 cut(s)	717, 923
MalI	GATC	4 cut(s)	42, 156, 633, 834
MboI	GATC	4 cut(s)	40, 154, 631, 832
MboII	GAAGA	3 cut(s)	203, 641, 674
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	3 cut(s)	429, 462, 696
MlsI	TGGCCA	1 cut(s)	223
MluCI	AATT	1 cut(s)	91
MluNI	TGGCCA	1 cut(s)	223
MlyI	GAGTC	2 cut(s)	554, 785
Mox20I	TGGCCA	1 cut(s)	223
MscI	TGGCCA	1 cut(s)	223
MseI	TTAA	3 cut(s)	279, 413, 767
MslI	CAYNNNNRTG	1 cut(s)	687
Msp20I	TGGCCA	1 cut(s)	223
MspI	CCGG	1 cut(s)	1050
MspR9I	CCNGG	2 cut(s)	897, 1050
MvaI	CCWGG	1 cut(s)	897
MwoI	GCNNNNNNNGC	3 cut(s)	302, 332, 700
NciI	CCSGG	1 cut(s)	1050
NdeII	GATC	4 cut(s)	40, 154, 631, 832
NheI	GCTAGC	1 cut(s)	811
NmuCI	GTSAC	1 cut(s)	923
NspI	RCATGY	3 cut(s)	12, 866, 983
NspV	TTCGAA	1 cut(s)	189
PagI	TCATGA	2 cut(s)	490, 658
PciI	ACATGT	3 cut(s)	8, 862, 979
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	5 cut(s)	194, 310, 352, 506, 650
PfoI	TCCNGGA	2 cut(s)	895, 1048
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	2 cut(s)	553, 784
PpsI	GAGTC	2 cut(s)	553, 784
PscI	ACATGT	3 cut(s)	8, 862, 979
Psp124BI	GAGCTC	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	895
PspGI	CCWGG	1 cut(s)	895
PspPI	GGNCC	2 cut(s)	731, 800
PsuI	RGATCY	1 cut(s)	631
RseI	CAYNNNNRTG	1 cut(s)	687
SacI	GAGCTC	1 cut(s)	462
SaqAI	TTAA	3 cut(s)	279, 413, 767
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	4 cut(s)	40, 154, 631, 832
Sau96I	GGNCC	2 cut(s)	731, 800
SchI	GAGTC	2 cut(s)	554, 785
ScrFI	CCNGG	2 cut(s)	897, 1050
SduI	GDGCHC	3 cut(s)	429, 462, 696
SfaNI	GCATC	4 cut(s)	322, 335, 484, 1033
SfuI	TTCGAA	1 cut(s)	189
SinI	GGWCC	2 cut(s)	731, 800
SmiMI	CAYNNNNRTG	1 cut(s)	687
SmlI	CTYRAG	1 cut(s)	300
SmoI	CTYRAG	1 cut(s)	300
Sse9I	AATT	1 cut(s)	91
SspMI	CTAG	1 cut(s)	812
SstI	GAGCTC	1 cut(s)	462
StyD4I	CCNGG	2 cut(s)	895, 1048
TaaI	ACNGT	1 cut(s)	913
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	189
TasI	AATT	1 cut(s)	91
TfiI	GAWTC	5 cut(s)	194, 310, 352, 506, 650
Tru1I	TTAA	3 cut(s)	279, 413, 767
Tru9I	TTAA	3 cut(s)	279, 413, 767
TscAI	CASTG	1 cut(s)	1045
TseFI	GTSAC	1 cut(s)	923
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	923
TspDTI	ATGAA	7 cut(s)	96, 195, 540, 603, 671, 675, 741
TspGWI	ACGGA	1 cut(s)	943
TspRI	CASTG	1 cut(s)	1045
VpaK11BI	GGWCC	2 cut(s)	731, 800
XagI	CCTNNNNNAGG	1 cut(s)	726
XceI	RCATGY	3 cut(s)	12, 866, 983
XmiI	GTMKAC	1 cut(s)	1002
XspI	CTAG	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.