Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001291.1

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Reverse (-)

141603 .. 142751

Gene Structure 1149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001291.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atgtgggaggatcccaacacaagcatttacaacaatggttggactaatgctaactcttcatggaatccggaagcgttcaactcatggcagccttatcaagtccctatgtatgactcttatcatcatgatattgattcattcatgtggccgtcataccaagtgcaagcacccgccctctcggttgatccaatgaagccttcccttgaggcaattgtacaaccagttgcgaaaagtgtggaagaatcatcaaggaatatggacaaagccgtggagaatattgagcaacatatccaacaaattattaatgctttgaaccaagaaacagaggagcaagaaatgcaatctagtgttcaagagtcatatcatgaggtgttgacaattgagaaagaagattgggcagaagctaatgagcctttggaggccaaggtactaatggggcagcctcgcacacctactacaatagggaagtcccttacagtcacagccttaccccaacctcataatgtattccatgagtcaattttggatgaggatgaagatacagatgtggatgaaccctatgaaaagaaacttgaggttgggacgtgtgaagattatgtgttacaatatacaactgagcttgaggcatgtgaaaatagtgatattgaagagtccttggcagatgacgaactttacattaaagaaagtagggttgagcttcataagtcccaagtgccgaaagcaatcaatacagctcatgaagatcaagaatacaaggatgacatgaaggattgcttagaagaggagtccagcaaatctcctatagacgagcctctaattccatcacatgtccgaccacctgatcattacttgccacattcgagctttacatatgttccctccatccaagaagcccttgagcttgttgatcatgtggagatgctgataggtgaatatcccaaatctgataacaagattcttttggccatgtttgttagatctacgaagagaatgagacaatggaagaagagaaagaaaacgagaaaattgaaatcctatctttccattgttaccaaggagcacaagttgcttaaaagggaccacctagcatttttgaaaagggtcaagcatctcatggaaccaagaccaaaacctcctgattactcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

382

Amino Acids

44.38

Weight (kDa)

4.86

Isoelectric Point (pI)

55.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	3 cut(s)	5, 18, 179
AcoI	YGGCCR	2 cut(s)	146, 963
AfaI	GTAC	2 cut(s)	216, 429
AflIII	ACRYGT	2 cut(s)	584, 826
AgsI	TTSAA	6 cut(s)	79, 313, 353, 647, 1030, 1096
AjiI	CACGTC	1 cut(s)	585
AjuI	GAANNNNNNNTTGG	2 cut(s)	181, 213
AluBI	AGCT	6 cut(s)	404, 619, 697, 734, 864, 901
AluI	AGCT	6 cut(s)	404, 619, 697, 734, 864, 901
Alw21I	GWGCWC	1 cut(s)	1062
Alw26I	GTCTC	1 cut(s)	988
AlwI	GGATC	3 cut(s)	5, 18, 179
Aor13HI	TCCGGA	1 cut(s)	67
AoxI	GGCC	3 cut(s)	146, 420, 963
ApeKI	GCWGC	2 cut(s)	88, 439
AseI	ATTAAT	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	1078
AsuHPI	GGTGA	1 cut(s)	941
AvaII	GGWCC	1 cut(s)	1078
BaeI	ACNNNNGTAYC	2 cut(s)	531, 564
BalI	TGGCCA	1 cut(s)	965
BamHI	GGATCC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	1062
BbvI	GCAGC	2 cut(s)	100, 451
BccI	CCATC	2 cut(s)	829, 890
BceAI	ACGGC	2 cut(s)	133, 251
BclI	TGATCA	2 cut(s)	841, 907
BcoDI	GTCTC	1 cut(s)	988
BfaI	CTAG	2 cut(s)	345, 1085
BfmI	CTRYAG	1 cut(s)	801
BglII	AGATCT	1 cut(s)	977
BisI	GCNGC	2 cut(s)	89, 440
BlsI	GCNGC	2 cut(s)	90, 441
Bme18I	GGWCC	1 cut(s)	1078
BmgBI	CACGTC	1 cut(s)	585
BmgT120I	GGNCC	1 cut(s)	1078
BmiI	GGNNCC	3 cut(s)	12, 1079, 1119
BmsI	GCATC	2 cut(s)	909, 1117
BpuEI	CTTGAG	4 cut(s)	224, 593, 641, 917
BsaJI	CCNNGG	4 cut(s)	267, 423, 654, 1053
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	1049, 1079
Bse1I	ACTGG	1 cut(s)	221
BseAI	TCCGGA	1 cut(s)	67
BseDI	CCNNGG	4 cut(s)	267, 423, 654, 1053
BseGI	GGATG	5 cut(s)	532, 538, 556, 763, 882
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	2 cut(s)	341, 797
BseXI	GCAGC	2 cut(s)	100, 451
BshFI	GGCC	3 cut(s)	148, 422, 965
BsiHKAI	GWGCWC	1 cut(s)	1062
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	5 cut(s)	86, 454, 595, 691, 1091
BsmAI	GTCTC	1 cut(s)	988
BsmFI	GGGAC	5 cut(s)	86, 454, 595, 691, 1091
BsnI	GGCC	3 cut(s)	148, 422, 965
Bsp1286I	GDGCHC	1 cut(s)	1062
Bsp13I	TCCGGA	1 cut(s)	67
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	6 cut(s)	10, 184, 742, 841, 907, 977
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	3 cut(s)	148, 422, 965
BspCNI	CTCAG	1 cut(s)	607
BspEI	TCCGGA	1 cut(s)	67
BspHI	TCATGA	3 cut(s)	124, 364, 736
BspLI	GGNNCC	3 cut(s)	12, 1079, 1119
BspPI	GGATC	3 cut(s)	5, 18, 179
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	4 cut(s)	267, 423, 654, 1053
BssMI	GATC	6 cut(s)	10, 184, 742, 841, 907, 977
BssT1I	CCWWGG	3 cut(s)	423, 654, 1053
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	5 cut(s)	61, 642, 774, 980, 1001
BstAPI	GCANNNNNTGC	2 cut(s)	337, 1066
BstAUI	TGTACA	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	2 cut(s)	615, 775
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	5 cut(s)	532, 538, 556, 763, 882
BstKTI	GATC	6 cut(s)	13, 187, 745, 844, 910, 980
BstMAI	GTCTC	1 cut(s)	988
BstMBI	GATC	6 cut(s)	10, 184, 742, 841, 907, 977
BstMWI	GCNNNNNNNGC	2 cut(s)	337, 1066
BstNSI	RCATGY	2 cut(s)	630, 830
BstSFI	CTRYAG	1 cut(s)	801
BstV1I	GCAGC	2 cut(s)	100, 451
BstX2I	RGATCY	2 cut(s)	10, 977
BstYI	RGATCY	2 cut(s)	10, 977
BsuRI	GGCC	3 cut(s)	148, 422, 965
BtgI	CCRYGG	1 cut(s)	267
BtrI	CACGTC	1 cut(s)	585
BtsCI	GGATG	5 cut(s)	532, 538, 556, 763, 882
Cac8I	GCNNGC	1 cut(s)	165
CciI	TCATGA	3 cut(s)	124, 364, 736
Cfr13I	GGNCC	1 cut(s)	1078
Csp6I	GTAC	2 cut(s)	215, 428
CviQI	GTAC	2 cut(s)	215, 428
DdeI	CTNAG	2 cut(s)	615, 775
DpnI	GATC	6 cut(s)	12, 186, 744, 843, 909, 979
DpnII	GATC	6 cut(s)	10, 184, 742, 841, 907, 977
EaeI	YGGCCR	2 cut(s)	146, 963
Eam1104I	CTCTTC	5 cut(s)	61, 642, 774, 980, 1001
EarI	CTCTTC	5 cut(s)	61, 642, 774, 980, 1001
Eco130I	CCWWGG	3 cut(s)	423, 654, 1053
Eco47I	GGWCC	1 cut(s)	1078
EcoT14I	CCWWGG	3 cut(s)	423, 654, 1053
ErhI	CCWWGG	3 cut(s)	423, 654, 1053
FalI	AAGNNNNNCTT	4 cut(s)	758, 790, 879, 911
FaqI	GGGAC	5 cut(s)	86, 454, 595, 691, 1091
FauI	CCCGC	1 cut(s)	178
FauNDI	CATATG	1 cut(s)	871
FbaI	TGATCA	2 cut(s)	841, 907
Fnu4HI	GCNGC	2 cut(s)	89, 440
FokI	GGATG	5 cut(s)	539, 545, 563, 770, 869
Fsp4HI	GCNGC	2 cut(s)	89, 440
FspBI	CTAG	2 cut(s)	345, 1085
GluI	GCNGC	2 cut(s)	89, 440
HaeIII	GGCC	3 cut(s)	148, 422, 965
HapII	CCGG	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	9 cut(s)	64, 113, 134, 242, 356, 515, 650, 785, 955
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	1 cut(s)	941
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	2 cut(s)	833, 946
Hpy188III	TCNNGA	8 cut(s)	68, 125, 353, 365, 737, 746, 1136, 1146
Hpy8I	GTNNAC	1 cut(s)	375
HpyAV	CCTTC	2 cut(s)	207, 760
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	1 cut(s)	584
HpyCH4V	TGCA	2 cut(s)	163, 340
HpyF10VI	GCNNNNNNNGC	2 cut(s)	337, 1066
HpyF3I	CTNAG	2 cut(s)	615, 775
HpySE526I	ACGT	1 cut(s)	584
Kpn2I	TCCGGA	1 cut(s)	67
Ksp22I	TGATCA	2 cut(s)	841, 907
Kzo9I	GATC	6 cut(s)	10, 184, 742, 841, 907, 977
LmnI	GCTCC	2 cut(s)	328, 1057
LpnPI	CCDG	4 cut(s)	81, 234, 802, 852
Lsp1109I	GCAGC	2 cut(s)	100, 451
LweI	GCATC	2 cut(s)	909, 1117
MaeI	CTAG	2 cut(s)	345, 1085
MaeII	ACGT	1 cut(s)	584
MaeIII	GTNAC	3 cut(s)	478, 600, 1048
MalI	GATC	6 cut(s)	12, 186, 744, 843, 909, 979
MboI	GATC	6 cut(s)	10, 184, 742, 841, 907, 977
MfeI	CAATTG	2 cut(s)	210, 378
MflI	RGATCY	2 cut(s)	10, 977
MhlI	GDGCHC	1 cut(s)	1062
MlsI	TGGCCA	1 cut(s)	965
MluCI	AATT	6 cut(s)	210, 297, 378, 519, 816, 1025
MluNI	TGGCCA	1 cut(s)	965
MlyI	GAGTC	5 cut(s)	107, 365, 524, 659, 794
MmeI	TCCRAC	3 cut(s)	20, 316, 856
Mox20I	TGGCCA	1 cut(s)	965
MroI	TCCGGA	1 cut(s)	67
MscI	TGGCCA	1 cut(s)	965
MseI	TTAA	3 cut(s)	303, 678, 1071
MslI	CAYNNNNRTG	1 cut(s)	142
Msp20I	TGGCCA	1 cut(s)	965
MspI	CCGG	1 cut(s)	68
MunI	CAATTG	2 cut(s)	210, 378
MwoI	GCNNNNNNNGC	2 cut(s)	337, 1066
NdeI	CATATG	1 cut(s)	871
NdeII	GATC	6 cut(s)	10, 184, 742, 841, 907, 977
NlaIV	GGNNCC	3 cut(s)	12, 1079, 1119
NmuCI	GTSAC	1 cut(s)	478
NspI	RCATGY	2 cut(s)	630, 830
PagI	TCATGA	3 cut(s)	124, 364, 736
PciI	ACATGT	1 cut(s)	826
PfeI	GAWTC	4 cut(s)	64, 134, 242, 955
PkrI	GCNGC	2 cut(s)	90, 441
PleI	GAGTC	5 cut(s)	107, 364, 523, 658, 793
PpsI	GAGTC	5 cut(s)	107, 364, 523, 658, 793
PscI	ACATGT	1 cut(s)	826
PshBI	ATTAAT	1 cut(s)	303
PspN4I	GGNNCC	3 cut(s)	12, 1079, 1119
PspPI	GGNCC	1 cut(s)	1078
PsuI	RGATCY	2 cut(s)	10, 977
RsaI	GTAC	2 cut(s)	216, 429
RsaNI	GTAC	2 cut(s)	215, 428
RseI	CAYNNNNRTG	1 cut(s)	142
SaqAI	TTAA	3 cut(s)	303, 678, 1071
SatI	GCNGC	2 cut(s)	89, 440
Sau3AI	GATC	6 cut(s)	10, 184, 742, 841, 907, 977
Sau96I	GGNCC	1 cut(s)	1078
SchI	GAGTC	5 cut(s)	107, 365, 524, 659, 794
SduI	GDGCHC	1 cut(s)	1062
SfaNI	GCATC	2 cut(s)	909, 1117
SfcI	CTRYAG	1 cut(s)	801
SinI	GGWCC	1 cut(s)	1078
SmiMI	CAYNNNNRTG	1 cut(s)	142
SmlI	CTYRAG	4 cut(s)	203, 572, 620, 896
SmoI	CTYRAG	4 cut(s)	203, 572, 620, 896
Sse9I	AATT	6 cut(s)	210, 297, 378, 519, 816, 1025
SsiI	CCGC	1 cut(s)	171
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	2 cut(s)	345, 1085
StyI	CCWWGG	3 cut(s)	423, 654, 1053
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	1 cut(s)	587
TaqI	TCGA	1 cut(s)	860
TasI	AATT	6 cut(s)	210, 297, 378, 519, 816, 1025
TatI	WGTACW	1 cut(s)	214
TfiI	GAWTC	4 cut(s)	64, 134, 242, 955
Tru1I	TTAA	3 cut(s)	303, 678, 1071
Tru9I	TTAA	3 cut(s)	303, 678, 1071
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	2 cut(s)	88, 439
Tsp45I	GTSAC	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	1078
VspI	ATTAAT	1 cut(s)	303
XceI	RCATGY	2 cut(s)	630, 830
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XspI	CTAG	2 cut(s)	345, 1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.