Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Reverse (-)

66637923 .. 66639032

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00332480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGTGATGATTGGGCAGAAACTCAAAGGCGTTGGGAGACCTTTATATCTCGAAGAGCACCCTTCTACACCGATGGTAACTTTAGAGGAGTTCCCAACAACTACGGCTTTGGATCAACCTCAAGATGCATTCAATGATTTAAGCTATGATGAGGATGAAATAAGGGATTTGGATGAGTCTTATGAAGAGCAACGCAATATTGAGACATGTGAGGACTACGAACTATGTTGCATAACCGAGCTTGAAAAATGGGAAATGGAAGATCCCTTTGATGATGATGATGATGAATCCTATCATGGAGGAAGTAAGGATGAGCTTCATGCAAATGTGTCCCAAGAGATCATTCTTGCGGTGATTGTTAAACTTAAGAAAAGATGGAGACAATGGAAGAGGAGAAAGGAAAAGAGGAGCATCAAATCTCATTTTTCCATTGCTCCCAAGTTACCTAAGTTACTTGCAAGGGACCATGAAATATCTTTGAAGAAGCTTAAGCATCTAATCGAACCGCAGCCTAAACCTCCTGATTACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

20.86

Weight (kDa)

4.93

Isoelectric Point (pI)

59.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	350, 506
AclWI	GGATC	2 cut(s)	120, 257
AflII	CTTAAG	2 cut(s)	365, 488
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	3 cut(s)	133, 245, 481
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AluBI	AGCT	4 cut(s)	144, 241, 316, 487
AluI	AGCT	4 cut(s)	144, 241, 316, 487
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	3 cut(s)	31, 197, 373
AlwI	GGATC	2 cut(s)	120, 257
ApeKI	GCWGC	1 cut(s)	508
AspS9I	GGNCC	1 cut(s)	463
AsuHPI	GGTGA	2 cut(s)	16, 364
AvaII	GGWCC	1 cut(s)	463
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	2 cut(s)	67, 369
BceAI	ACGGC	1 cut(s)	120
BcoDI	GTCTC	3 cut(s)	31, 197, 373
BfrI	CTTAAG	2 cut(s)	365, 488
BisI	GCNGC	1 cut(s)	509
BlsI	GCNGC	1 cut(s)	510
Bme18I	GGWCC	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	464
BmsI	GCATC	3 cut(s)	115, 420, 502
BpuEI	CTTGAG	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	429
BseGI	GGATG	3 cut(s)	160, 178, 316
BseMI	GCAATG	1 cut(s)	429
BseRI	GAGGAG	3 cut(s)	101, 406, 421
BseXI	GCAGC	1 cut(s)	520
BsiHKAI	GWGCWC	1 cut(s)	60
BslFI	GGGAC	2 cut(s)	316, 476
BsmAI	GTCTC	3 cut(s)	31, 197, 373
BsmFI	GGGAC	2 cut(s)	316, 476
BsmI	GAATGC	1 cut(s)	128
Bso31I	GGTCTC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	3 cut(s)	112, 262, 339
BspACI	CCGC	2 cut(s)	350, 506
BspLI	GGNNCC	1 cut(s)	464
BspPI	GGATC	2 cut(s)	120, 257
BspQI	GCTCTTC	2 cut(s)	48, 180
BspTI	CTTAAG	2 cut(s)	365, 488
BspTNI	GGTCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	429
BssMI	GATC	3 cut(s)	112, 262, 339
Bst6I	CTCTTC	3 cut(s)	48, 180, 383
BstAFI	CTTAAG	2 cut(s)	365, 488
BstDEI	CTNAG	1 cut(s)	447
BstF5I	GGATG	3 cut(s)	160, 178, 316
BstKTI	GATC	3 cut(s)	115, 265, 342
BstMAI	GTCTC	3 cut(s)	31, 197, 373
BstMBI	GATC	3 cut(s)	112, 262, 339
BstNSI	RCATGY	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	520
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BtsCI	GGATG	3 cut(s)	160, 178, 316
Cfr13I	GGNCC	1 cut(s)	463
CviAII	CATG	4 cut(s)	207, 296, 320, 467
CviJI	RGCY	6 cut(s)	107, 144, 241, 316, 487, 511
CviKI_1	RGCY	6 cut(s)	107, 144, 241, 316, 487, 511
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	3 cut(s)	114, 264, 341
DpnII	GATC	3 cut(s)	112, 262, 339
Eam1104I	CTCTTC	3 cut(s)	48, 180, 383
EarI	CTCTTC	3 cut(s)	48, 180, 383
Eco31I	GGTCTC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	463
EcoT22I	ATGCAT	1 cut(s)	130
FaeI	CATG	4 cut(s)	210, 299, 323, 470
FaiI	YATR	9 cut(s)	46, 147, 183, 208, 226, 233, 297, 321, 468
FaqI	GGGAC	2 cut(s)	316, 476
FatI	CATG	4 cut(s)	206, 295, 319, 466
Fnu4HI	GCNGC	1 cut(s)	509
FokI	GGATG	3 cut(s)	167, 185, 323
Fsp4HI	GCNGC	1 cut(s)	509
GluI	GCNGC	1 cut(s)	509
Hin1II	CATG	4 cut(s)	210, 299, 323, 470
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	2 cut(s)	176, 287
HphI	GGTGA	2 cut(s)	16, 364
Hpy188III	TCNNGA	3 cut(s)	50, 122, 521
HpyAV	CCTTC	1 cut(s)	72
HpyCH4V	TGCA	4 cut(s)	128, 231, 323, 458
HpyF3I	CTNAG	1 cut(s)	447
Hsp92II	CATG	4 cut(s)	210, 299, 323, 470
Kzo9I	GATC	3 cut(s)	112, 262, 339
LguI	GCTCTTC	2 cut(s)	48, 180
LmnI	GCTCC	2 cut(s)	408, 439
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	3 cut(s)	115, 420, 502
MaeIII	GTNAC	3 cut(s)	76, 441, 450
MalI	GATC	3 cut(s)	114, 264, 341
MboI	GATC	3 cut(s)	112, 262, 339
MboII	GAAGA	5 cut(s)	65, 197, 272, 400, 493
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	8 cut(s)	79, 129, 145, 205, 293, 384, 399, 528
Mph1103I	ATGCAT	1 cut(s)	130
MseI	TTAA	5 cut(s)	140, 360, 366, 489, 532
MslI	CAYNNNNRTG	1 cut(s)	324
MspCI	CTTAAG	2 cut(s)	365, 488
Mva1269I	GAATGC	1 cut(s)	128
NdeII	GATC	3 cut(s)	112, 262, 339
NlaIII	CATG	4 cut(s)	210, 299, 323, 470
NlaIV	GGNNCC	1 cut(s)	464
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	1 cut(s)	210
PciI	ACATGT	1 cut(s)	206
PciSI	GCTCTTC	2 cut(s)	48, 180
PctI	GAATGC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	510
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PscI	ACATGT	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	464
PspPI	GGNCC	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	324
SapI	GCTCTTC	2 cut(s)	48, 180
SaqAI	TTAA	5 cut(s)	140, 360, 366, 489, 532
SatI	GCNGC	1 cut(s)	509
Sau3AI	GATC	3 cut(s)	112, 262, 339
Sau96I	GGNCC	1 cut(s)	463
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	8 cut(s)	43, 121, 146, 243, 318, 448, 489, 520
SfaNI	GCATC	3 cut(s)	115, 420, 502
SinI	GGWCC	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	3 cut(s)	120, 365, 488
SmoI	CTYRAG	3 cut(s)	120, 365, 488
SsiI	CCGC	2 cut(s)	350, 506
SspI	AATATT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	51, 501
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	5 cut(s)	140, 360, 366, 489, 532
Tru9I	TTAA	5 cut(s)	140, 360, 366, 489, 532
TseI	GCWGC	1 cut(s)	508
TspDTI	ATGAA	5 cut(s)	171, 198, 300, 308, 483
Vha464I	CTTAAG	2 cut(s)	365, 488
VpaK11BI	GGWCC	1 cut(s)	463
XceI	RCATGY	1 cut(s)	210
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.