Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003492.1

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Forward (+)

61648 .. 62520

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003492.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgtctaataattatgatgagattattaaggaactaaatgctgctactcaagctttgattcagggacaacaagcttcagatgcttcttttcaggcttggattcaagaaaagcaagttcttgatgatgatttggcagaaaaactaaagcgtttggagaacttaatatctcaggagcatccttctaaaccgatggcaactttaggggagctcccaacaactacggctttgtgtcaatctcatgatgcagtccatgattcaacatttgatgaggatgaagtaatggatttggaggagtcttataaagagccactcaacgttgagatttttgaggatcactacatgaccgagcttgaaaagtgggaaatggaagatccctttgatgatgaggaatcctatcatgaagaaagtaaggatgatcttcatgcaagtgcgtcccaagtgcctgaaccaatcatgctacctcatcaagatccaagaggttacacaatggaggattgcttaatagaggagtccatcaaagctcctacatttgggcctttattgttagcacatggaagaccatctgatcctacaacgcctcattcaacctctacacatattctccacatccaaccaatggttgagtttgttgatcatgtggagatggtcataagtgaatatctcaaatcagataaggagataattcttgctgtgattgttaacgttaagaaaagaaggagacaatggaagaagagaaagaaaaagagaagcatcaaatcctatctttccgttgctcccaagttacccaagttgctgtcaagggatcatgaaacatctttgaagaggcttaagcatttgatcgaaccgcggcctaaacctcctaattactcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

290

Amino Acids

33.46

Weight (kDa)

5.16

Isoelectric Point (pI)

60.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
AccB7I	CCANNNNNTGG	1 cut(s)	616
AccII	CGCG	1 cut(s)	847
AciI	CCGC	2 cut(s)	845, 847
AclI	AACGTT	2 cut(s)	315, 702
AclWI	GGATC	5 cut(s)	339, 365, 464, 560, 810
AcuI	CTGAAG	1 cut(s)	60
AfiI	CCNNNNNNNGG	2 cut(s)	530, 616
AflII	CTTAAG	1 cut(s)	827
AgsI	TTSAA	5 cut(s)	104, 258, 353, 585, 820
AluBI	AGCT	5 cut(s)	53, 74, 208, 349, 521
AluI	AGCT	5 cut(s)	53, 74, 208, 349, 521
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	712
AlwI	GGATC	5 cut(s)	339, 365, 464, 560, 810
AoxI	GGCC	2 cut(s)	533, 848
ApeKI	GCWGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	562
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	4 cut(s)	184, 521, 568, 637
BceAI	ACGGC	1 cut(s)	237
BclI	TGATCA	1 cut(s)	631
BcoDI	GTCTC	1 cut(s)	712
BfrI	CTTAAG	1 cut(s)	827
BisI	GCNGC	2 cut(s)	42, 848
BlsI	GCNGC	2 cut(s)	43, 849
BmgT120I	GGNCC	1 cut(s)	533
BmsI	GCATC	4 cut(s)	70, 184, 232, 759
BpiI	GAAGAC	1 cut(s)	562
BpuEI	CTTGAG	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	845
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bsc4I	CCNNNNNNNGG	2 cut(s)	530, 616
BseDI	CCNNGG	1 cut(s)	845
BseGI	GGATG	4 cut(s)	175, 277, 418, 606
BseLI	CCNNNNNNNGG	2 cut(s)	530, 616
BseMII	CTCAG	1 cut(s)	182
BseRI	GAGGAG	2 cut(s)	305, 521
BseXI	GCAGC	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	847
BshFI	GGCC	2 cut(s)	535, 850
BsiHKAI	GWGCWC	1 cut(s)	210
BslFI	GGGAC	2 cut(s)	78, 418
BslI	CCNNNNNNNGG	2 cut(s)	530, 616
BsmAI	GTCTC	1 cut(s)	712
BsmFI	GGGAC	2 cut(s)	78, 418
BsnI	GGCC	2 cut(s)	535, 850
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	8 cut(s)	331, 370, 415, 469, 565, 631, 802, 837
BspACI	CCGC	2 cut(s)	845, 847
BspANI	GGCC	2 cut(s)	535, 850
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	847
BspHI	TCATGA	3 cut(s)	238, 397, 805
BspPI	GGATC	5 cut(s)	339, 365, 464, 560, 810
BspTI	CTTAAG	1 cut(s)	827
BssECI	CCNNGG	1 cut(s)	845
BssMI	GATC	8 cut(s)	331, 370, 415, 469, 565, 631, 802, 837
Bst6I	CTCTTC	2 cut(s)	725, 815
BstAFI	CTTAAG	1 cut(s)	827
BstDEI	CTNAG	1 cut(s)	168
BstDSI	CCRYGG	1 cut(s)	845
BstF5I	GGATG	4 cut(s)	175, 277, 418, 606
BstFNI	CGCG	1 cut(s)	847
BstKTI	GATC	8 cut(s)	334, 373, 418, 472, 568, 634, 805, 840
BstMAI	GTCTC	1 cut(s)	712
BstMBI	GATC	8 cut(s)	331, 370, 415, 469, 565, 631, 802, 837
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 80
BstUI	CGCG	1 cut(s)	847
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	562
BstX2I	RGATCY	2 cut(s)	370, 469
BstYI	RGATCY	2 cut(s)	370, 469
BsuRI	GGCC	2 cut(s)	535, 850
BtgI	CCRYGG	1 cut(s)	845
BtsCI	GGATG	4 cut(s)	175, 277, 418, 606
CciI	TCATGA	3 cut(s)	238, 397, 805
Cfr13I	GGNCC	1 cut(s)	533
Cfr42I	CCGCGG	1 cut(s)	848
CseI	GACGC	1 cut(s)	420
CviAII	CATG	9 cut(s)	239, 251, 340, 398, 422, 454, 551, 635, 806
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	8 cut(s)	333, 372, 417, 471, 567, 633, 804, 839
DpnII	GATC	8 cut(s)	331, 370, 415, 469, 565, 631, 802, 837
Eam1104I	CTCTTC	2 cut(s)	725, 815
EarI	CTCTTC	2 cut(s)	725, 815
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	9 cut(s)	242, 254, 343, 401, 425, 457, 554, 638, 809
FaqI	GGGAC	2 cut(s)	78, 418
FatI	CATG	9 cut(s)	238, 250, 339, 397, 421, 453, 550, 634, 805
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	2 cut(s)	42, 848
FokI	GGATG	4 cut(s)	162, 284, 425, 593
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	2 cut(s)	42, 848
GluI	GCNGC	2 cut(s)	42, 848
HaeIII	GGCC	2 cut(s)	535, 850
HgaI	GACGC	1 cut(s)	420
Hin1II	CATG	9 cut(s)	242, 254, 343, 401, 425, 457, 554, 638, 809
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HindIII	AAGCTT	2 cut(s)	51, 72
HinfI	GANTC	6 cut(s)	58, 100, 254, 293, 389, 509
HpaI	GTTAAC	1 cut(s)	700
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	3 cut(s)	79, 565, 670
Hpy188III	TCNNGA	8 cut(s)	104, 119, 170, 239, 398, 467, 806, 870
Hpy8I	GTNNAC	1 cut(s)	700
HpyAV	CCTTC	2 cut(s)	189, 708
HpyCH4IV	ACGT	2 cut(s)	315, 702
HpyCH4V	TGCA	2 cut(s)	245, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 80
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	2 cut(s)	315, 702
Hsp92II	CATG	9 cut(s)	242, 254, 343, 401, 425, 457, 554, 638, 809
Ksp22I	TGATCA	1 cut(s)	631
KspAI	GTTAAC	1 cut(s)	700
KspI	CCGCGG	1 cut(s)	848
Kzo9I	GATC	8 cut(s)	331, 370, 415, 469, 565, 631, 802, 837
LmnI	GCTCC	5 cut(s)	172, 205, 213, 526, 778
LpnPI	CCDG	4 cut(s)	47, 77, 155, 456
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	4 cut(s)	70, 184, 232, 759
MaeII	ACGT	2 cut(s)	315, 702
MaeIII	GTNAC	2 cut(s)	479, 780
MalI	GATC	8 cut(s)	333, 372, 417, 471, 567, 633, 804, 839
MboI	GATC	8 cut(s)	331, 370, 415, 469, 565, 631, 802, 837
MboII	GAAGA	7 cut(s)	380, 410, 413, 567, 739, 742, 832
MflI	RGATCY	2 cut(s)	370, 469
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	3 cut(s)	10, 681, 862
MlyI	GAGTC	2 cut(s)	302, 518
MmeI	TCCRAC	1 cut(s)	634
MseI	TTAA	6 cut(s)	27, 161, 500, 699, 705, 828
MslI	CAYNNNNRTG	1 cut(s)	426
MspA1I	CMGCKG	1 cut(s)	847
MspCI	CTTAAG	1 cut(s)	827
MvnI	CGCG	1 cut(s)	847
MwoI	GCNNNNNNNGC	2 cut(s)	50, 80
NdeII	GATC	8 cut(s)	331, 370, 415, 469, 565, 631, 802, 837
NlaIII	CATG	9 cut(s)	242, 254, 343, 401, 425, 457, 554, 638, 809
PagI	TCATGA	3 cut(s)	238, 397, 805
PfeI	GAWTC	4 cut(s)	58, 100, 254, 389
PflMI	CCANNNNNTGG	1 cut(s)	616
PkrI	GCNGC	2 cut(s)	43, 849
PleI	GAGTC	2 cut(s)	301, 517
PpsI	GAGTC	2 cut(s)	301, 517
PsiI	TTATAA	1 cut(s)	300
Psp124BI	GAGCTC	1 cut(s)	210
Psp1406I	AACGTT	2 cut(s)	315, 702
PspPI	GGNCC	1 cut(s)	533
PsuI	RGATCY	2 cut(s)	370, 469
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	210
SacII	CCGCGG	1 cut(s)	848
SaqAI	TTAA	6 cut(s)	27, 161, 500, 699, 705, 828
SatI	GCNGC	2 cut(s)	42, 848
Sau3AI	GATC	8 cut(s)	331, 370, 415, 469, 565, 631, 802, 837
Sau96I	GGNCC	1 cut(s)	533
SchI	GAGTC	2 cut(s)	302, 518
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	4 cut(s)	70, 184, 232, 759
Sfr303I	CCGCGG	1 cut(s)	848
SgrBI	CCGCGG	1 cut(s)	848
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	2 cut(s)	48, 827
SmoI	CTYRAG	2 cut(s)	48, 827
Sse9I	AATT	3 cut(s)	10, 681, 862
SsiI	CCGC	2 cut(s)	845, 847
SstI	GAGCTC	1 cut(s)	210
TaiI	ACGT	2 cut(s)	318, 705
TaqI	TCGA	1 cut(s)	840
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	3 cut(s)	10, 681, 862
TauI	GCSGC	1 cut(s)	850
TfiI	GAWTC	4 cut(s)	58, 100, 254, 389
Tru1I	TTAA	6 cut(s)	27, 161, 500, 699, 705, 828
Tru9I	TTAA	6 cut(s)	27, 161, 500, 699, 705, 828
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	4 cut(s)	288, 410, 414, 822
TspGWI	ACGGA	1 cut(s)	757
Van91I	CCANNNNNTGG	1 cut(s)	616
Vha464I	CTTAAG	1 cut(s)	827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.