Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Reverse (-)

7276484 .. 7277919

Gene Structure 1436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00391070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTGGGAGGATCCCAACTTAAGCATTTACAACAATGGTTGGACTAATGCTAACTCTTCATGGAATCCGGAAGCGTTCAACTCATGGCAGCCTTATCAAGTCCCTATGTATGATCCTTATCATCACAATATTGATTCATTCATGTGGCCATCATACCAAGAGCAAGCACCAGTCCTCTTGGTTGATACAATGAAGCCCTCCCTTGAGGCAATTGTACAGGCAGTTGCGAAAAGTGCGGAAGAATCATCAAGGAATATGGACAAAGCCGTGGAGAATATTGAGCAACATATCCAACAAATTATTAATTCTTTGAACCAAGAAACAGAGGAGCGGGAAACACAATGTTGGGTTCAAGAGTCATATCATGAGGTGTTGACGAGTGAGGAAGAAGATTGGGAAGAAACTAATGAGCCTTTGGAGGCCAAGGTACTTATGGAGTGCCCTCCTACACCTACTACAACTTTAGGGCAGTCCCTTGAAGTCACAGCCTTACCTCAACCTCAACCTCATAATGTATTCCATGAGTCAATTTTGGATGAGGATGAGGATACAGATGTGGATGAGCCCTATGAAAAGAAACTTGAGGTTGAGACATATGAGGATTATGTGTTACACTATACAACCGAGCTTGAAGTATATGAAGATAGTGATATTGAAGAGTCCTTGACAGATGAGGAATTTCACATTAAAGAAAGTAAGGTTCATCTTCATGCGAATGAGTACCAAGTGCCGGAAGCAATCATCATAGCTCATAAAGATAAAGAATACAAGGATGACATGGAGGATTGCTTAGAAGAGGAGTCCAGCAAATCTCCTATAGACGGGCCTCTAATTCTATCACATGCCCGACCACCCGACCATTACTTGCCACATTCGAGCTTTACATTTGTTCCCTCCATACAAGAAACTCTTGAGTTTGTGGATCATTTGGAGATGGTGATATGTGAATATCTCAATTCGATAAGAAGATTCTTTTGGCCGTGCTTGGGGAACATAAGAAGAGAACGAGACAATGGAAGAAGAGAAAGAAAACAAGAAAGTCTCATAGTTGAGAAAGATTTACAGGAGTCACTTTTTATCAAACCAGTTTTTCTGACGCCCAGATTTCAGTCCACTTTGAACAGCTGTCGTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

378

Amino Acids

44.34

Weight (kDa)

4.41

Isoelectric Point (pI)

67.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	331
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	2 cut(s)	236, 331
AclWI	GGATC	4 cut(s)	5, 18, 107, 930
AcoI	YGGCCR	2 cut(s)	146, 977
AcsI	RAATTY	1 cut(s)	677
AcyI	GRCGYC	1 cut(s)	1097
AfaI	GTAC	3 cut(s)	216, 429, 722
AfiI	CCNNNNNNNGG	3 cut(s)	730, 821, 986
AflII	CTTAAG	1 cut(s)	19
AgsI	TTSAA	7 cut(s)	79, 313, 353, 479, 632, 656, 1120
AjuI	GAANNNNNNNTTGG	2 cut(s)	958, 990
AluBI	AGCT	4 cut(s)	628, 749, 879, 1125
AluI	AGCT	4 cut(s)	628, 749, 879, 1125
Alw26I	GTCTC	3 cut(s)	584, 1002, 1046
AlwI	GGATC	4 cut(s)	5, 18, 107, 930
Aor13HI	TCCGGA	1 cut(s)	67
AoxI	GGCC	4 cut(s)	146, 420, 824, 977
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	677
AseI	ATTAAT	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	824
AsuHPI	GGTGA	1 cut(s)	949
BaeGI	GKGCMC	1 cut(s)	443
BaeI	ACNNNNGTAYC	2 cut(s)	540, 573
BalI	TGGCCA	1 cut(s)	148
BamHI	GGATCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	567
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	2 cut(s)	157, 928
BceAI	ACGGC	2 cut(s)	251, 964
BciVI	GTATCC	1 cut(s)	541
BcoDI	GTCTC	3 cut(s)	584, 1002, 1046
BfmI	CTRYAG	1 cut(s)	816
BfrI	CTTAAG	1 cut(s)	19
BfuI	GTATCC	1 cut(s)	541
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	824
BmiI	GGNNCC	1 cut(s)	12
BpuEI	CTTGAG	3 cut(s)	224, 602, 932
BsaBI	GATNNNNATC	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	1097
BsaJI	CCNNGG	2 cut(s)	267, 423
BsaWI	WCCGGW	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	3 cut(s)	730, 821, 986
Bse1I	ACTGG	2 cut(s)	170, 1085
Bse8I	GATNNNNATC	1 cut(s)	117
BseAI	TCCGGA	1 cut(s)	67
BseDI	CCNNGG	2 cut(s)	267, 423
BseGI	GGATG	4 cut(s)	541, 547, 565, 778
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	3 cut(s)	730, 821, 986
BseNI	ACTGG	2 cut(s)	170, 1085
BseRI	GAGGAG	2 cut(s)	341, 812
BseSI	GKGCMC	1 cut(s)	443
BseXI	GCAGC	1 cut(s)	100
BshFI	GGCC	4 cut(s)	148, 422, 826, 979
BsiSI	CCGG	2 cut(s)	68, 731
BslFI	GGGAC	2 cut(s)	86, 457
BslI	CCNNNNNNNGG	3 cut(s)	730, 821, 986
BsmAI	GTCTC	3 cut(s)	584, 1002, 1046
BsmFI	GGGAC	2 cut(s)	86, 457
BsnI	GGCC	4 cut(s)	148, 422, 826, 979
Bsp1286I	GDGCHC	2 cut(s)	443, 567
Bsp13I	TCCGGA	1 cut(s)	67
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	3 cut(s)	10, 112, 922
BspACI	CCGC	2 cut(s)	236, 331
BspANI	GGCC	4 cut(s)	148, 422, 826, 979
BspEI	TCCGGA	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	4 cut(s)	5, 18, 107, 930
BspTI	CTTAAG	1 cut(s)	19
BsrBI	CCGCTC	1 cut(s)	331
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	170, 1085
BssECI	CCNNGG	2 cut(s)	267, 423
BssMI	GATC	3 cut(s)	10, 112, 922
BssNI	GRCGYC	1 cut(s)	1097
BssT1I	CCWWGG	1 cut(s)	423
Bst6I	CTCTTC	5 cut(s)	61, 651, 789, 994, 1015
BstACI	GRCGYC	1 cut(s)	1097
BstAFI	CTTAAG	1 cut(s)	19
BstAUI	TGTACA	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	1 cut(s)	790
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	4 cut(s)	541, 547, 565, 778
BstKTI	GATC	3 cut(s)	13, 115, 925
BstMAI	GTCTC	3 cut(s)	584, 1002, 1046
BstMBI	GATC	3 cut(s)	10, 112, 922
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	845
BstSFI	CTRYAG	1 cut(s)	816
BstSLI	GKGCMC	1 cut(s)	443
BstV1I	GCAGC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	4 cut(s)	148, 422, 826, 979
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	4 cut(s)	541, 547, 565, 778
Cac8I	GCNNGC	1 cut(s)	165
CciI	TCATGA	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	824
CseI	GACGC	1 cut(s)	1105
Csp6I	GTAC	3 cut(s)	215, 428, 721
CviAII	CATG	8 cut(s)	60, 84, 142, 365, 521, 710, 778, 842
CviQI	GTAC	3 cut(s)	215, 428, 721
DdeI	CTNAG	1 cut(s)	790
DpnI	GATC	3 cut(s)	12, 114, 924
DpnII	GATC	3 cut(s)	10, 112, 922
EaeI	YGGCCR	2 cut(s)	146, 977
Eam1104I	CTCTTC	5 cut(s)	61, 651, 789, 994, 1015
EarI	CTCTTC	5 cut(s)	61, 651, 789, 994, 1015
Eco130I	CCWWGG	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	567
EcoT14I	CCWWGG	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	8 cut(s)	63, 87, 145, 368, 524, 713, 781, 845
FalI	AAGNNNNNCTT	2 cut(s)	894, 926
FaqI	GGGAC	2 cut(s)	86, 457
FatI	CATG	8 cut(s)	59, 83, 141, 364, 520, 709, 777, 841
FauI	CCCGC	1 cut(s)	324
FauNDI	CATATG	1 cut(s)	595
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	4 cut(s)	548, 554, 572, 785
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	1 cut(s)	89
GluI	GCNGC	1 cut(s)	89
HaeIII	GGCC	4 cut(s)	148, 422, 826, 979
HapII	CCGG	2 cut(s)	68, 731
HgaI	GACGC	1 cut(s)	1105
Hin1I	GRCGYC	1 cut(s)	1097
Hin1II	CATG	8 cut(s)	63, 87, 145, 368, 524, 713, 781, 845
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	9 cut(s)	64, 134, 242, 356, 524, 659, 800, 969, 1067
HpaII	CCGG	2 cut(s)	68, 731
HphI	GGTGA	1 cut(s)	949
Hpy166II	GTNNAC	2 cut(s)	375, 1113
Hpy188I	TCNGA	1 cut(s)	1095
Hpy188III	TCNNGA	4 cut(s)	68, 353, 365, 911
Hpy8I	GTNNAC	2 cut(s)	375, 1113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	790
Hsp92I	GRCGYC	1 cut(s)	1097
Hsp92II	CATG	8 cut(s)	63, 87, 145, 368, 524, 713, 781, 845
Kpn2I	TCCGGA	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	10, 112, 922
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	8 cut(s)	81, 183, 203, 744, 817, 1049, 1098, 1114
Lsp1109I	GCAGC	1 cut(s)	100
MaeIII	GTNAC	3 cut(s)	481, 609, 1068
MalI	GATC	3 cut(s)	12, 114, 924
MbiI	CCGCTC	1 cut(s)	331
MboI	GATC	3 cut(s)	10, 112, 922
MfeI	CAATTG	1 cut(s)	210
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	2 cut(s)	443, 567
MlsI	TGGCCA	1 cut(s)	148
MluCI	AATT	7 cut(s)	210, 297, 304, 528, 677, 831, 955
MluNI	TGGCCA	1 cut(s)	148
MlyI	GAGTC	5 cut(s)	365, 533, 668, 809, 1076
MmeI	TCCRAC	2 cut(s)	20, 316
Mox20I	TGGCCA	1 cut(s)	148
MroI	TCCGGA	1 cut(s)	67
MscI	TGGCCA	1 cut(s)	148
MseI	TTAA	3 cut(s)	20, 303, 687
MslI	CAYNNNNRTG	3 cut(s)	142, 708, 714
Msp20I	TGGCCA	1 cut(s)	148
MspA1I	CMGCKG	1 cut(s)	1125
MspCI	CTTAAG	1 cut(s)	19
MspI	CCGG	2 cut(s)	68, 731
MunI	CAATTG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	3 cut(s)	10, 112, 922
NlaIII	CATG	8 cut(s)	63, 87, 145, 368, 524, 713, 781, 845
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	2 cut(s)	481, 1068
NspI	RCATGY	1 cut(s)	845
PagI	TCATGA	1 cut(s)	364
PfeI	GAWTC	4 cut(s)	64, 134, 242, 969
PkrI	GCNGC	1 cut(s)	90
PleI	GAGTC	5 cut(s)	364, 532, 667, 808, 1075
PpsI	GAGTC	5 cut(s)	364, 532, 667, 808, 1075
PshBI	ATTAAT	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	824
PsuI	RGATCY	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	1125
RsaI	GTAC	3 cut(s)	216, 429, 722
RsaNI	GTAC	3 cut(s)	215, 428, 721
RseI	CAYNNNNRTG	3 cut(s)	142, 708, 714
SaqAI	TTAA	3 cut(s)	20, 303, 687
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	3 cut(s)	10, 112, 922
Sau96I	GGNCC	1 cut(s)	824
SchI	GAGTC	5 cut(s)	365, 533, 668, 809, 1076
SduI	GDGCHC	2 cut(s)	443, 567
SfcI	CTRYAG	1 cut(s)	816
SmiMI	CAYNNNNRTG	3 cut(s)	142, 708, 714
SmlI	CTYRAG	4 cut(s)	19, 203, 581, 911
SmoI	CTYRAG	4 cut(s)	19, 203, 581, 911
Sse9I	AATT	7 cut(s)	210, 297, 304, 528, 677, 831, 955
SsiI	CCGC	2 cut(s)	236, 331
SspI	AATATT	2 cut(s)	130, 277
StyI	CCWWGG	1 cut(s)	423
TaqI	TCGA	2 cut(s)	875, 959
TasI	AATT	7 cut(s)	210, 297, 304, 528, 677, 831, 955
TatI	WGTACW	1 cut(s)	214
TfiI	GAWTC	4 cut(s)	64, 134, 242, 969
Tru1I	TTAA	3 cut(s)	20, 303, 687
Tru9I	TTAA	3 cut(s)	20, 303, 687
TseFI	GTSAC	2 cut(s)	481, 1068
TseI	GCWGC	1 cut(s)	88
Tsp45I	GTSAC	2 cut(s)	481, 1068
TspDTI	ATGAA	9 cut(s)	48, 126, 130, 206, 585, 654, 692, 698, 1122
Vha464I	CTTAAG	1 cut(s)	19
VspI	ATTAAT	1 cut(s)	303
XapI	RAATTY	1 cut(s)	677
XceI	RCATGY	1 cut(s)	845
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.